Array 1 66397-58372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXJX01000004.1 Lactococcus plantarum strain DSM 20686 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 66396 28 100.0 33 ............................ CGGAAAAAAACCGCATTATGTAAGGAATGATAG 66335 28 100.0 33 ............................ TTGTGCGACTTTATTGAATTTGATAGAGAGTAT 66274 28 100.0 33 ............................ AGGTCTAGTGCCTTTTTTTTGTTTAATGCCACA 66213 28 100.0 33 ............................ TATCTGCGTTAGCTGACACTACTTCTTTAGCTA 66152 28 100.0 33 ............................ TCATGCGTATCATATCCGCAACGCTTGCAGTAT 66091 28 100.0 33 ............................ CAGTCGCTGCGGTTTGTGGATTGCTTATAGATT 66030 28 100.0 33 ............................ TCCACGTGACGTAATTAAATTTTAAGGAGAATA 65969 28 100.0 33 ............................ TGACAAGAAGACGCTAGCACTGTATGACAAGCT 65908 28 100.0 33 ............................ TGTACGGCACTCTGATTGGAATTCTCCAATCTG 65847 28 100.0 33 ............................ TGTTGACATAAGCGATACAGCACCGAACAAACA 65786 28 100.0 33 ............................ CACGCTTGAACAATCTATCTATGAGCAAATGAA 65725 28 100.0 33 ............................ CCGAAGAAAAAGCTCGTAAGCAAGCCAGTGAAA 65664 28 100.0 33 ............................ TATACCCAAAGACAAAATTTATAGAAATAATGT 65603 28 100.0 33 ............................ CTGGCACAAGTTCGATAAGTGGGTTTATCCATT 65542 28 100.0 33 ............................ TAGAAGTGTACAAAGTATACATTCATTTGTTGG 65481 28 100.0 33 ............................ CTAAAGCCATATTCATCCATCCTCAACTGGCAC 65420 28 100.0 33 ............................ TACACCAAAACTAAGTTAGCTAAATTAATCTGT 65359 28 100.0 33 ............................ TAACTTGATTAAGATTAGTCGTGTTTGTGGGTC 65298 28 100.0 33 ............................ TGGTGTTGTCGAGCCGACGCAGGACGAGATCGA 65237 28 100.0 33 ............................ TTCTTGTTGTGAATTTTTCGTCTAAAATTGAAT 65176 28 100.0 33 ............................ TACAGCATCAATGCTGTTTGGTTTAGTTGGTGG 65115 28 100.0 33 ............................ CGGTAGCACCGATGTTAATTGGGATGATAACGG 65054 28 100.0 33 ............................ CGCTGCATCATCCTCTGGTGTGACCTTTGCTTT 64993 28 100.0 33 ............................ TGGATCTTCTGTAAAGTAGGATGTTGAACCTGA 64932 28 100.0 33 ............................ TGGCTATACTCGTATCTCAGAAAACCAATCATG 64871 28 100.0 33 ............................ CGGCATCTGGCAGTTTGTGAGCTATCAACTAAA 64810 28 100.0 33 ............................ CTGATACTAATCAATGAAAGCGAAGTACACAAT 64749 28 100.0 33 ............................ TGTACATTGACGGCTTTCAATCAACTCACGATT 64688 28 100.0 33 ............................ CAAGTACATCTAATAACGGCTTTAACCCTGTAG 64627 28 100.0 33 ............................ TAATCTCTTGGTGGCTTACCTTCATCAGTTCCT 64566 28 100.0 33 ............................ TAAAAGTGTTGACAATATTAAACTTAAGTTGTA 64505 28 100.0 33 ............................ TTGATAACAATGAAGCTATTTCATGGTTCGATA 64444 28 100.0 33 ............................ TATCCGCTTCAGATATATCTACATCTTTGTCTA 64383 28 100.0 33 ............................ TAGTCGTATTGTTTGACACGTGCGCCAGAACTG 64322 28 100.0 33 ............................ TAATCTAAACCTTTGACTGTATCTTTGTAGCCG 64261 28 100.0 33 ............................ CATCTCGGCCAAGCTTTCAAACTCTGGCAGGTC 64200 28 100.0 33 ............................ ATGACTTTAGCGAAGTCGAAACAAGAGAAACGA 64139 28 100.0 33 ............................ TAATTGAGCCAAACGGCCTTCATTGTTAACACC 64078 28 100.0 33 ............................ AAATTGCCGCTTAAGGCATCTGCAAGCGATATC 64017 28 100.0 33 ............................ TAGCACCCCAAGGTGTCGTTTTGGTTTCGTCTG 63956 28 100.0 33 ............................ TATGATTTGTCTTCTGTCAATAATTGATGCAAA 63895 28 100.0 33 ............................ TGAAGAATGGAGAACCTTACGAGGAACAGTTGA 63834 28 100.0 33 ............................ TAATATATAAAGGTCAAAATTACTAGTTTTTAT 63773 28 100.0 33 ............................ TCAACGGTTGGGATAATCCAGAAGGCTATCAAG 63712 28 100.0 33 ............................ TAGCAATGTTAAAGCCAAGTCTGAATGGCTAAG 63651 28 100.0 33 ............................ TTCAGGCTTAAGAGATAACTCGAAACTTAGGTA 63590 28 100.0 33 ............................ TCTAAGTAATATTATTTTCTTTGAGCCAGTTTG 63529 28 100.0 33 ............................ TGCAAGACTTGACAGACAAGGACAAACAGAGTC 63468 28 100.0 33 ............................ TATTAAAGGTAAAAATGGTGTAAAGTCTTGCGG 63407 28 100.0 33 ............................ CAAAGGACACTAAAGTTATAAAAATATACAAAT 63346 28 100.0 33 ............................ TTGATAGCGACGCCTGAGTTTGCTAAGTTTGTA 63285 28 100.0 33 ............................ CTTTTTATCATTAACAATATTGAATATCCGTTC 63224 28 100.0 33 ............................ TAGATTGATTTTTCCAAGTTTTACTTCTAGAAC 63163 28 100.0 33 ............................ TACCGTTAAACCAACATCAGATCACGATTCCGA 63102 28 100.0 33 ............................ TGGATTTACTCGTATATCAGAAAATCAGGACTG 63041 28 100.0 33 ............................ CTGAGCGCTCGGTTTCTGGTATAGTAGAAACAA 62980 28 100.0 33 ............................ CATCTTAGCGTAGTTACTTGTTTCGAATTGTGT 62919 28 100.0 33 ............................ TGTTGTAGCTGAACAAATTCATCAACAATCAGA 62858 28 100.0 33 ............................ CGACATCAAACAAGCGCTAGATGAAAAGAGGGA 62797 28 100.0 33 ............................ TCTAGATAGTCATTAACATTTTTCCAGAAAATC 62736 28 100.0 33 ............................ TTGAAATGATTCAGCATCTTGCCATATGTTATC 62675 28 100.0 33 ............................ TGATCTTCTACATAAGCAACGCAACTTAAACTT 62614 28 100.0 33 ............................ TTAGCTGATGTACTAGCTTTAGGTAATGCGAGT 62553 28 100.0 33 ............................ CGAACGCATCGAAGAAATCATGGAAGAAGCAGT 62492 28 100.0 33 ............................ CTAGATGATGAAGCTAAACGATCACTAATTAAA 62431 28 100.0 33 ............................ TACACTTATGAGACTTTACCAACTCAGGAGATT 62370 28 100.0 33 ............................ TTTGGTACGTTTCTTGTGTTTGTAAATCGTAGA 62309 28 100.0 33 ............................ TAATCTTGAACAGTAAAGAGTGGGGCAGATACC 62248 28 100.0 33 ............................ CTTGACTGTATCGCCTATTTGCGTGTCTTTGTC 62187 28 100.0 33 ............................ TATCGTGCCTTTCAACGTGAAGTAGTCGCAACC 62126 28 100.0 33 ............................ CCACACCGTCTGTCATATCTTCGATAAAGTCAT 62065 28 100.0 33 ............................ TGGATTGAAAGATATTGGAAAACAATCTAATTC 62004 28 100.0 33 ............................ TGGAGATGGCTAACAAAGAAGGTTGGACAACTA 61943 28 100.0 33 ............................ CCAATTCTTCGCCAGTTCCGTAAAAGCATCCTA 61882 28 100.0 33 ............................ TGCAATCGTTGAAGATTTTGTACCATCAAGCTC 61821 28 100.0 33 ............................ TTGATAAAATATCCGCTTAGCTTGCTTCTGAGA 61760 28 100.0 33 ............................ CCCAATCTATGTTAGCTGCTACCTTTTGCTCTA 61699 28 100.0 33 ............................ TCGTGTCAACGCCCATAGGAGTGCCTATAACGA 61638 28 100.0 34 ............................ ATAGCTTTAGCTTTAGGCACTTCGACTATATAAG 61576 28 100.0 33 ............................ TAACTTCTCGCCATCTCCATCTTCAAGTGTAAA 61515 28 100.0 33 ............................ CGCCTAAGATTGCTTGGGAGTTTGAAAACATAG 61454 28 100.0 33 ............................ TGAATTATCGTGCAGATAGGATTCACGTTAAAA 61393 28 100.0 33 ............................ TATAACTTTGTCCGTCCCAATCAACGGCATAAA 61332 28 100.0 33 ............................ TTGGTAAACAATCAACGATGGTAATAGATATCT 61271 28 100.0 34 ............................ CAGTAAATAAAGATTGGTTCATTGCATTGCTTCA 61209 28 100.0 33 ............................ TTTATTTTACAGCATGATTCATAGCTGACTGAT 61148 28 100.0 33 ............................ TACTAGAAGAGCTTGGGATAACGTATCCGAAAA 61087 28 100.0 33 ............................ CGTCCAAGACTTTCTCTGTCTCATCATCGATGA 61026 28 100.0 33 ............................ TATGCGCACAGTAAACACGCAGAACGGACAAAA 60965 28 100.0 33 ............................ CCGATAACTTCGCTTAACGCATACTTCCAAGCG 60904 28 100.0 33 ............................ TACATCCGTCATAATCAAATGGGCAAGCTTTAA 60843 28 100.0 34 ............................ ATTTTATTTCTTGGATTGTACGCACGCTTCTTTT 60781 28 100.0 33 ............................ TTTCTTAGTCGTCTAATTCTATCCAACGAAAAG 60720 28 100.0 33 ............................ TTTGCACACTTAAAATCGCTCATTCTTCCACCT 60659 28 100.0 33 ............................ TAGTATTATGATGATTGCATAAAATATCAACTT 60598 28 100.0 33 ............................ TAGGAGCTTAAGGAGTTGCTACCTTAAGTAGAG 60537 28 100.0 33 ............................ TTGGAGAAAAACGCTTATTCGCTTGGCTTAGAG 60476 28 100.0 33 ............................ CTTGCATGAGTATGCCTAAATCCGTGAATTGTG 60415 28 100.0 33 ............................ TAAACTTCCAGACATTTTTCCTCCTTTTAAATA 60354 28 100.0 33 ............................ CTTCCACCGCCAAATACACTTCTAGGGTCAGAG 60293 28 100.0 33 ............................ CTGTCGCTATTGAACTAGTAGCGTTAGATACTT 60232 28 100.0 33 ............................ TTGAATTCGCCCCTATCCTACCAGCACTTAGTG 60171 28 100.0 33 ............................ CAGATATTTTGCAGAAGCTAATAACAGTGCAAT 60110 28 100.0 33 ............................ TGGTATAGATATGAGAGGTAGTAATATAATCGA 60049 28 100.0 33 ............................ TGTTCTCTTCTTGTTTTTCCTTACTTTGTAAGT 59988 28 100.0 33 ............................ TTAGCCCATCTTCGCCTATGTTTTTGTAAGGAA 59927 28 100.0 33 ............................ CCTGCTTCAAGTTCGTTCATGTTGTCATGTTTA 59866 28 100.0 33 ............................ TCGCGTCAACTTATTATGGTCGCGGACGTTACA 59805 28 100.0 33 ............................ TTAGCTAGTTCTATAATCTCCGATATGGTAACA 59744 28 100.0 33 ............................ TAGTTATTTACAAAATTTTCAAATTGTGAACCT 59683 28 100.0 33 ............................ TGCGAACACAGCAGAAGTATTAAAAATGTTAAA 59622 28 100.0 33 ............................ TAATTCCAAGGGAGTATTTACCAAAAGATTTAA 59561 28 100.0 33 ............................ TGAATTCGACTAGGGTTATTAATGTTTGTGAAA 59500 28 100.0 33 ............................ TGAACACAATAAAATGCTTGAATATCTTGAACT 59439 28 100.0 34 ............................ ACATCTCATCTAGTAGAAAAGGCGACGGCACTAG 59377 28 100.0 33 ............................ TATCTTATCATTTGCTCTCTATCATTTTGAGAG 59316 28 100.0 33 ............................ TTGCTTGATCTAAAGATTCTAAAACAGCTTGAT 59255 28 100.0 33 ............................ TGTTGTCATGAAATTTTTTCTCTTTCTTTATTC 59194 28 100.0 33 ............................ TTCGCTAGAAGATCGGGCATACCTCCAACTACT 59133 28 96.4 33 ...............A............ TGTCTTTAAACGTCCGTTCTAGGCCGTATCGGT 59072 28 100.0 33 ............................ TTGCTTTTCTGACTAGTCCAATAGGTTTAGTTA 59011 28 100.0 33 ............................ TTTATACAAATAAATTTATAGTAAAACAAGATA 58950 28 100.0 34 ............................ CCCGCTGAGTAAGCTTTATTAAAATGTTGGAATA 58888 28 100.0 33 ............................ CATCAATGCATCAAATATAACTACAGGTATATT 58827 28 100.0 33 ............................ CATCAATGCATCAAATATAACTACAGGTATATT 58766 28 100.0 33 ............................ CATCAATGCATCAAATATAACTACAGGTATATT 58705 28 100.0 33 ............................ CATCAATGCATCAAATATAACTACAGGTATATT 58644 28 100.0 33 ............................ CATCAATGCATCAAATATAACTACAGGTATATT 58583 28 100.0 33 ............................ TAAAGCACTACGTGAAAAAATTCAATCTTTAGA 58522 28 100.0 33 ............................ CGTCCATCGCATTAACATCATTCTGAACAGTTG 58461 28 96.4 33 .............T.............. CGAAGCAAAGAAACGCAGTGCAGTAGCTTATAT G [58439] 58399 28 96.4 0 ...................A........ | ========== ====== ====== ====== ============================ ================================== ================== 132 28 99.9 33 CTTTTACCCGCACCTGCGGGGGTGATCC # Left flank : ACAGAAATAGATGAAATAATTGAAATTGGTGCAGTACGCGTTACAGGTAGTCAGCTTTTGGAATTTCATGTATTGATAAAATGTGATAAAAATGTTCCTGCATTTATAACTGATTTAACAGGGATAGATAATGATCTCCTATTAAAATATGGTATTGAGGTAAAAGATGCTATTACATCTTTTATGGATTTCGTAAAAGATTCTCCCCTAGTAGGTTACAAAGTTGATTTTGATAGAACTTTTTTACAAACTATGACAAAAATATACTGCTTACCGAAATTTGATAACCAGTTTATAGATTTATTGACTTTTGTAAAGAAAGAAAAACTGTTTTTAACAAATTATAAGCTTCAAACGGTACTAAAAGCGTATGGTATACTAGATAAAGTTCCTCATAGGGCATTATCAGATGCGAAGCTATCAGCACAATTAGCAAGTAAAGTGAATGGATTTTTGATTAGTATGAGAAAGAAACGTTGATTTTTAGGGGTTTTTTTAGT # Right flank : TGAATTTGATTTATACGACGCAAAAGGCTTTAACTTTTCTCCGCAAATACAGAATAGACAAGTTCTCGCCTATTTTCAAGATAGTAGATTCATTTTTATGTCTATTAGCAGAATGAGTCAGTGTCACTAATTTTGAAATAACAAATTAAATCACAAAAGATAAAAAGACTGTGTGTACAAACATGACACGCAGTCCTTTTTTATTGCCGTAAATTTTGTTAAACTATAGAAAGTGATGATAAAAAAAGCGGAGAATAAGGAATAGATGAGTATCTTAACAGTACAAAAATTAAGTCATGGCTTCGGAGATCGAGCTATTTTCGATGATGTTAACTTTCGATTATTAAAAGGCGAACATATTGGCTTTGTCGGTGCAAATGGTGAAGGTAAATCTACTTTCATGAATATCATAACAGGTGCATTGCAACCAGATGAAGGAAAAATTACTTGGTCGACTAAGCATCGTGTGGGCTATATGGACCAACACGCTGCGCTTGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTACCCGCACCTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //