Array 1 26940-25856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFWN010000016.1 Staphylococcus pseudintermedius strain CAM1 contig_16_length_45429_cov_189.101468, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 26939 36 100.0 29 .................................... AATTAGCCAGTTTAAAGGGTCGCACGAAT 26874 36 100.0 29 .................................... ACTAACTGCGCCAGTTACCGCGTCAACTA 26809 36 100.0 30 .................................... ACGGTGTCGTACTAGAAATTTTCATCACGA 26743 36 100.0 30 .................................... TGTAAATGACAGAGGTTCAGGCAACGCACC 26677 36 100.0 29 .................................... AATGTTGCAAGGCATTGTTGACCATTTTT 26612 36 100.0 29 .................................... CGCAATTCGTCCATTACTTCTTCTGCTTG 26547 36 100.0 29 .................................... CTTGTATCTAACCACAGCATATCGTTGAC 26482 36 100.0 30 .................................... ATTCTTCGTGAGGAATCAATACTACGTTTC 26416 36 100.0 31 .................................... GTGTGTCATCAGACTTTACACCTTCAAATAC 26349 36 100.0 29 .................................... TCGTTTTGTGATAACAAATCAAGTGATAT 26284 36 100.0 30 .................................... GATGAGAGGTGTAAAAGCACAATTGCATGA 26218 36 100.0 29 .................................... TGTATGAGATGAAACCCAAATTTAGAGCA 26153 36 100.0 29 .................................... AGCTCGTCCGCCACCTACGTTTTCATCTT 26088 36 100.0 29 .................................... TATACGTGCAAACGGTTCTCTTTTAATTT 26023 36 100.0 29 .................................... CATTACCTTTGTTTGCGTTGTTTGATTCT 25958 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 25892 35 83.3 0 T........T................-.CA.C.... | CT [25859] ========== ====== ====== ====== ==================================== =============================== ================== 17 36 98.9 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATATTTTTGGATTTGAG # Right flank : CTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 105806-104757 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFWN010000004.1 Staphylococcus pseudintermedius strain CAM1 contig_4_length_193766_cov_202.085999, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 105805 36 100.0 36 .................................... ATTTTCTATCTTACAATTTAATAATAACATGAAGCG 105733 36 100.0 36 .................................... GATTTTAAACGAGTTTCTATATATAATTCATCTAAA 105661 36 100.0 36 .................................... ATCCAAGTCATCATCGCCAATCATAAAATAATCCTC 105589 36 100.0 36 .................................... TTTTATTTTTATTAAACATTTCCGCTTTCTCAAGAG 105517 36 100.0 38 .................................... ATAATTACTGTCATCAATGTCTCGTAAGTACATACTAT 105443 36 100.0 36 .................................... CGTTCATTTCGATATTGTTTATTACGTTTTTCATTT 105371 36 100.0 38 .................................... CGTACAACCATTTTTAAATGTTGCCCAACCCGTTTTTA 105297 36 100.0 34 .................................... AGCTAACATATGAAATGCATAAATAATTTCTTGT 105227 36 100.0 36 .................................... CATATTTTCGTACCCTTTATAAGTTTTAAAGTTGTC 105155 36 100.0 35 .................................... TGTTCTCCTCTTTGTCTATGTGTTTTCTTTATATT 105084 36 100.0 35 .................................... TGCTACCTTCCGCTCTGTATGTTTTATTCATGTCT 105013 36 100.0 36 .................................... TTCTTTAACAGCTTCATCTGACAAATCGTTATACGG C [104996] 104940 36 100.0 36 .................................... TTACTCATTTGTGATTTGAATGCGCCTCTTAATTCT AT [104915] 104866 36 88.9 38 G...G....A.T........................ CGTCGAAAGTATCTTCAATATTTAAAGTAAAGTTTGTC 104792 36 88.9 0 ....G......A....G............T...... | ========== ====== ====== ====== ==================================== ====================================== ================== 15 36 98.5 36 AATCTAATAGAGACCCCGATATTAGGGGACGAGAAC # Left flank : GTGAAAACTGGAGATGAAGTCAAATGTGTAACGTATAGTTGAAAGGTGGTAATACAGCGGTTTTGGCAATTTAATAGGTGATGGAAATGTCAAGGCACAATGCATATTCCGATTAATTTTTTAAATACGAAGAAGTTAGGAATAAGCAAATATTGAAGTTTGCACAGCTACAGTATATTCGGCCAGATGTTAATTATTAAAAAGAAAGTTCCAGTATTCAAAGGAAGAGTAGAAAATGTATGATAATTATCATTAACAAGACTTCGTTTAATTGAAAGCGTTTAAAAAATATAGAAGAAAGTAATCATGTGAATAGGATATGAATTAAGAAAGGTTTATTGTATAATATCTATGATATGTTTTGAAATATTTATAGTTGGTTGAAACTGAAATGTCTAAAAATTGGACAATAGTGGTATTTTTAATATTAAATTTGTCTTATTTCTAGACATGATTAAAGTATAGTTATCCTCGTTATCAAGGTGTTTCTACAGCTGACT # Right flank : AGAACTTTCAATGTGAGTTGTGACCAATGAAGTATTTAAAAATGATGAGAGATATAGAAGTATGAAGGCAACGTTTTAAAAATTACAAATAATTCACAATTCTGTTGTTGCAAACAAATAAATGTTGTAAAATTAAATTAACATTTTAAGCGATAAAATGGGGTCTTATACTTTTTGGTGAATGTTTGTATTTTTGCATATATTTTAGTCATAGTTATTTAAAGTGTAAGTATTAGTGCTTTTGATTAAAATTTTGAAGAAATAATAAGTGATTAAAAGGTGTTGAGATTGAATATACTACTGTATTGATACAATGACTCACTGAATAGTATCCTTGTTTTTATCTAGGGAGGTGTAAAAATGAAAGATATCATTTACGTTGAGAACCATCATTTTGTCAGTGTTAAAGGGGAAAGTATCAAGTTTAAAAATATTATTGATAAATCAGAGCAATATTTTTTAGTAGATGATATCGAAGCACTGATATTTGATAGTCATAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCTAATAGAGACCCCGATATTAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 167695-167449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFWN010000004.1 Staphylococcus pseudintermedius strain CAM1 contig_4_length_193766_cov_202.085999, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 167694 30 100.0 41 .............................. CTTCTAAGACGCGATATGATTCTAATTGGTCTTCATTCGAT 167623 30 100.0 44 .............................. GATATACTCCTTTACCATGTATTAATTCTGGACCACTATTCGAT C [167618] 167548 30 100.0 39 .............................. CATATTCGATCGTGTATATCAAAACTTTATGCATTCGAT 167479 30 96.7 0 ..........................G... | T [167451] ========== ====== ====== ====== ============================== ============================================ ================== 4 30 99.2 42 AACTACCCCGTAGAAGAGGGGACGAGAACT # Left flank : ATATACAGACACCTATGTCTTTTAAATATCAGAGTAATTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTCGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAAAATATTAATATTGTTGACTATAAATTAAAAAGTACACGATTTAACTTAGAAAAAGTTAAAATCCCTTCATTTACGGGAGAAATAGTGTTTAAAATTAAAGGACCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGCGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAGTATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGTAAATTTTGCCTTTGAACTATTGATTTGATAGGCTTTAAAGAGCTATCTAAATTCGAT # Right flank : CATCTTGATGATCCCAATTGGCTTGGTTAAAAAGAAATCGATAATCCTCGTAGAATAGAGAAAAAGTATTAAAAATATATTTGATTTGATAAAATATTCTGCAAAAAAGAGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATTATTGAAATTAATCGACATTCAATTTCTAAATAAACAGAAACAAAAATAACTTTCATATAAATAATTTCTTTGCGATTAAGTTGGAATTAGAAATACTAAATACAAATAACAGCGAATGAAATGCATATTATTGAGGAATTGGATGTGTAGTGCAATTTCGAGAGTTACTACTTAAGAAAATAAAAAGAAGAAAACAAACAATAAGAATTAAATCTGAAGCAAGATATAAAAGCAAATATTTTTGATACAACCACATTAGTAAATACTTTATTAATTAGTATACGACTGAAAGCGAAGTAACAGCTAACAATGCTCCAGATATAGACATTAGTGTTACGAAAGAATAATATTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACTACCCCGTAGAAGAGGGGACGAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 3 177389-176425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFWN010000004.1 Staphylococcus pseudintermedius strain CAM1 contig_4_length_193766_cov_202.085999, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 177388 36 100.0 36 .................................... ACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG 177316 36 100.0 34 .................................... ACTAGATACCCAGAACAAAATAGGTCTAACGAAA 177246 36 100.0 36 .................................... TCTATAAGTTCATTAATTCCGATACCTAGATTATCT 177174 36 100.0 34 .................................... AATTTTCTAATTCTATAAGTTCATTAATTCCGAT 177104 36 100.0 36 .................................... TATACTATTTACATAATTTTTTATGTGTCTGTCTAC 177032 36 100.0 37 .................................... TAATAGTGTTGTTCTCTATTAAAAGATACAATCCTGT 176959 36 100.0 34 .................................... TAGAATGTTATTATCTAAGTGGTCGATGTATTCC 176889 36 100.0 37 .................................... TCATACTAGCACCCCACTCTCTACTGAACAAGTATCA 176816 36 100.0 35 .................................... CTTAAAATCTAATTGCATTGTTATCAATTCCTTTA 176745 36 100.0 38 .................................... TCTGTAATGTATTCATTTAATGTAATCATAATTTTTTC 176671 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 176599 36 100.0 35 .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 176528 36 97.2 33 ...................................C TCATCTTTCATGTCACTGATTAATTCATTTGTA 176459 35 94.4 0 ..............................-...G. | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 99.4 36 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : GTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //