Array 1 2307918-2309441 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029701.1 Akkermansia muciniphila strain EB-AMDK-40 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2307918 31 100.0 34 ............................... CAAACGGTGAAACCTTTATAGAACAAACACGTGA 2307983 31 100.0 34 ............................... TTAAACTCAAGGTTTTCCCCTTCGAGCGTGTAGA 2308048 31 100.0 33 ............................... GATTGTGGCGTACTTAACGCCAATATGCTCCGG 2308112 31 100.0 34 ............................... ATTGTATTATGTGGTTAGGTTTATTTATTGTGCC 2308177 31 100.0 34 ............................... CGGATTGGATTCAGGCCGTCCCGTAGGGGAAGCT 2308242 31 100.0 34 ............................... TGGCGCGTTTCGGTCAGGTTGATCTGGTAGCGCA 2308307 31 100.0 34 ............................... TTTTCCTTATCGTTTCTCACAAACCCTTCCGGCA 2308372 31 100.0 33 ............................... TGAAGGTGTGCCGCAAGCGAAACAATACAATAA 2308436 31 100.0 34 ............................... TTGAACTTCGCAAGGTCCGAGTTGGTGATACGGG 2308501 31 100.0 34 ............................... ACGGCATCTGCCTGTTCCCCGTTTTGCCGGAGGA 2308566 31 100.0 34 ............................... TCTCCATGGCGTTGCCAAGAACATTTTTCAGGAA 2308631 31 100.0 34 ............................... TAATCATATCCCTACTACAACGGTAGGAATTAGA 2308696 31 100.0 34 ............................... TGTACTCCAATTTCAGGGAGGATGTAGTTAACGT 2308761 31 100.0 34 ............................... AATCGCTTTCCCGCCTTTGGCCTTGCTTGCTCGA 2308826 31 100.0 34 ............................... TTGCAAATATAGATAAAGATTAACTATGAATAAG 2308891 31 100.0 34 ............................... AAGGAGCTTTTGTTGGTCCTTGTGGAGGGCAAAT 2308956 31 100.0 34 ............................... ATATCCAGGTGCCCGCGGATGCTCTCCGCCCCGG 2309021 31 100.0 34 ............................... GAGAAAGTCACCCTTGCGGGTATTTGCTCCGGCT 2309086 31 100.0 34 ............................... ACAGGCCCGGCGCTGGAACGGCTCATTGACTACC 2309151 31 100.0 34 ............................... CACAGAGTGGATATTATAGATATAAAAGTATTAG 2309216 31 100.0 33 ............................... TCTTGTTACCTAAGAGGCCCCTACTATGGCACA 2309280 31 100.0 34 ............................... CGATAAAAAACAGATACTTTCCGTGTTACTGCAA 2309345 31 96.8 34 ........T...................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 2309410 31 83.9 0 ....T................A..A....TA | G [2309423] ========== ====== ====== ====== =============================== ================================== ================== 24 31 99.2 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGGATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGCGCCGCCCGGGAGGCCTGTTGTGTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACGTGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGTAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : AGTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTTTGATAAATGGTTTTAAATGGTTATTTATTTAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGAC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2508103-2512744 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029701.1 Akkermansia muciniphila strain EB-AMDK-40 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2508103 31 100.0 33 ............................... ACCTGCGGCTATCCGCTAGACCTGCTGGACTAT 2508167 31 100.0 34 ............................... TTAAACTCAAGGTTTTCCCCTTCGAGCGCGTAGA 2508232 31 100.0 35 ............................... ATATACCCAGGAAGAACATAATATTTTACACAGTC 2508298 31 100.0 35 ............................... GGTAAGGGTTACCAACATGACGGGAAGGGTTTCTT 2508364 31 100.0 35 ............................... ATGAATCTCCTGCGCGTCCGGGTAGTAGTCATAGG 2508430 31 100.0 34 ............................... CTTCGGGGAACAAGGCCAATTTAGCATAGGTGTG 2508495 31 100.0 34 ............................... CGCAATGCGGGCAACGGCCATTTACGGGGGTTAC 2508560 31 100.0 34 ............................... GTCATGATGGATAGTGAGCAGAGCAAGAAAGCCT 2508625 31 100.0 34 ............................... TGGCAAAACAGGTGCCAGTGTATATTTATGTGCC 2508690 31 100.0 34 ............................... CGGCTCGCAGAATATAGGCTGGAGTTGCCCGTTG 2508755 31 100.0 34 ............................... CCGTGGGAGTGCTCCAACTGCTTACGGGTACAGG 2508820 31 100.0 35 ............................... AAGACTTGTCGCAAAGGCTTTTTGTGAAGTTTCAG 2508886 31 100.0 32 ............................... CTGATAGGCTACCGCAACACTTGCCTAAATCC 2508949 31 100.0 34 ............................... TGGCAAAACAGGTGCCAGTGTATATTTATGTGCC 2509014 31 100.0 35 ............................... CAAAATTTCCCCCATACAGCGGGCCGTATGAGGAA 2509080 31 100.0 33 ............................... CACGGAGGTGGGTTGAGAGAACTGGCTCTTGTC 2509144 31 100.0 34 ............................... GACGACGTGCTTAGTGCCGCCACCAAGATTGCTA 2509209 31 100.0 33 ............................... TGACCAAGCATGAACATCTTCTTTACACCGCGG 2509273 31 100.0 34 ............................... ACCGTTAATGGTATTGTTCACCCATTCGGGAGCA 2509338 31 100.0 34 ............................... TGGACAATAGCGGTAATCTTAGCGTTAGCCTTAT 2509403 31 100.0 34 ............................... ATGTCTCCATGCCGCATGGCCCAGGCACCATCCC 2509468 31 100.0 33 ............................... GAAGGTCTTTAGCGATTGCTTTGCCATCTAAGA 2509532 31 100.0 34 ............................... ATCATAGAGTTATCTTGCTTGTGTCAAGTTTGTT 2509597 31 100.0 34 ............................... TATTTGTTAAGGTTATAGGGGAGATTGAAAAATG 2509662 31 100.0 33 ............................... GGTGAAAGAATGGGGGTTACAAGCTCTCCTTCT 2509726 31 100.0 34 ............................... AAACTACGGAACTGATTGCGTAACAGTTTGAGCA 2509791 31 100.0 34 ............................... AGGCCAGAGGTAGGCACGATGTCAGCGACAGGGG 2509856 31 100.0 34 ............................... CACCTGGGCATTACACGGACCAGAGTAGCTGTCA 2509921 31 100.0 36 ............................... TCTATCCACGGGGTCCACGTAATCGGCGTAGGACTG 2509988 31 100.0 33 ............................... TACAACTTCGCGGCTGACTTGGAAGCCTCGCGG 2510052 31 100.0 34 ............................... ATAAGCTGAAATGGAACGGCTATGTAGTCGCCTT 2510117 31 100.0 34 ............................... CCCCCATGAATGCCTCTATAATTGCCCCGGTACG 2510182 31 100.0 33 ............................... TATCAGGAGAGTAATTTCTCCAATACATTTCTG 2510246 31 100.0 34 ............................... CCATGGTCAGCACCTTGTTGGTAATCTCATGCTG 2510311 31 100.0 34 ............................... TCCACCACGCCGGAGTTTCTCTTGTACATGGAGA 2510376 31 100.0 34 ............................... CCCTGTTCACCAACGGCGAGATAGGTACGGTGCA 2510441 31 100.0 34 ............................... AATGTCGTAGCCGCAGGCGGTAGCATATCCTATG 2510506 31 100.0 35 ............................... GTTGTCATGGTTGTGGGTGCGATTATAGGACCGGG 2510572 31 100.0 34 ............................... CGGCTTTTTCCACCTTGTCCAGCACGGAGGGCAT 2510637 31 100.0 34 ............................... CATTCCGTCCTCCATTTTTGGAGGGGATGAATTG 2510702 31 100.0 34 ............................... CCGTTAAAATCCTGCGTGATTTTATGGCTATCAG 2510767 31 100.0 33 ............................... TCTTACGCTTCCACTTCTTTCCGTGAAAATTTT 2510831 31 100.0 35 ............................... AATGCAAGTCTTTATCTCTTCGGGCCGAACGTTGA 2510897 31 100.0 35 ............................... TCCCGTATAGATAGCTTGAACGACAATCGGAACAT 2510963 31 100.0 33 ............................... TGATAATAAAAAGTATAAATCAGGTTATGACGC 2511027 31 100.0 34 ............................... CAGGTCGGCGAATCCCAGCGGGCGGACCGCGTCA 2511092 31 100.0 34 ............................... TCCGGCTACCGACTGGGACCGGCTGCCGGAAACT 2511157 31 100.0 34 ............................... CCCGTCCAAACTGTACTGCGCTACTGGTCTAACT 2511222 31 100.0 33 ............................... TTTTGCCAAGAGGCAATCCCTGACCATGCGGGA 2511286 31 100.0 33 ............................... GCGTTCGCGGCTGTTGGTAGCCTGCCTGGACGT 2511350 31 100.0 34 ............................... TTTGCTTTTCGCCGTCGTCATCCAGTCCGTCAGC 2511415 31 100.0 34 ............................... GTGAGTGATCGCGTGTTTCGCTCGAATGATTCTA 2511480 31 100.0 33 ............................... TATTCGCTTTTGATTTTCATTTATGTATTTCCC 2511544 31 100.0 34 ............................... GCCCTGGTGGCATGAATAGCTTAAACACTATACA 2511609 31 100.0 34 ............................... CCTGCCCCCACAATCTGCATAACTTCCTCATGTT 2511674 31 100.0 34 ............................... GTTCTTCGCTCATAGCAAAAGTCTGATTTTTAAT 2511739 31 100.0 34 ............................... CGGATGAAGCGTTTGATGCAATCGGGGATGATGC 2511804 31 100.0 34 ............................... TATAATCATTAGCAATTAATCAAAAAAACAAAAG 2511869 31 100.0 33 ............................... TATGAGAAACGTTGAATTATGCGTGGTTGCATG 2511933 31 100.0 33 ............................... TGTTCGCACTAGCTGCGTGTGCCTCCTACATTA 2511997 31 100.0 35 ............................... TCTTCCCGGAAAACCCGTAACCTCAACTCTATCAG 2512063 31 100.0 35 ............................... ACGTTATTCATTGTTCGTCAAGTATTTGTAGGCCT 2512129 31 100.0 33 ............................... TGTTTCTTCGTAAATCAAGATATGCAGTTTACT 2512193 31 100.0 34 ............................... GTGTGCTCCCTGCTAAATTCTACCTTTGGATTGC 2512258 31 100.0 34 ............................... TTGCTTGTTTCACCGTAGTATTCTTCATACGGCC 2512323 31 100.0 34 ............................... CCGGTACTGTACAGGGGTGATAAAGGTCCACCTG 2512388 31 100.0 34 ............................... TATATAAAGATATTCTTCCACAAAGTGGTTGTTA 2512453 31 100.0 33 ............................... CGTTTTGTCCCACACAACTACCCCCCGCCAAGT 2512517 31 96.8 34 ...................A........... CCGTCGTCGTCCAGTCCGTCGGCCCTAAGTGGGG 2512582 31 100.0 34 ............................... TCACGCTCCCCGTGTATCTCCGCCCGCAGCAGGG 2512647 31 100.0 34 ............................... AACGGATGCTGATCATTGCTCCCCCGCTGGCTCA 2512712 31 83.9 0 ........C....G........G....C..G | G,C [2512737,2512740] ========== ====== ====== ====== =============================== ==================================== ================== 72 31 99.7 34 GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Left flank : CTCGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACTTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGGCGGCTGCTGATGCCGCAAAACACTTCAAGGCCGCTCCATATTGAATGGAGCGGCTTTTTGTTTTCGGAATGGCAGAGAAGGAAAAAGTTGCTGGACGATAGGCCGCTGACCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATGCTGAACCGCTGATCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCCCCGGTAGATCGGCGATTCCTGTAAGTCCTTGAAATCAGCAGATTGACATTCCCTCCAATAAAATATAAGGCGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTCAACGCATATCCCCTTCCGCC # Right flank : GGGACACGTTTTGGAAGGTTGTCACACTTGCATGGAAATGTAGATGTGAACATCAAACACCAGCCTTACTAAATGGCATTTCATTAAGTATAGGTTGCTGAGGGAGAATGGACTTGGAGCCGACTTTCTTGGAGTAATAAAGAAAAATAATAGTGAAGCTTGCATCTTTAAAAAGGTAGTTTGTGATATAAATAAACCTTCTCTTCAAGAAGAATTTGTTGTTGAAGTATGGCAATAGAATGTTAGGTTTCCGTTGCATTTTGCATCAAGAGAGGGTTAGACGAAATGATTAGAAAGTGTTTGGAGTCGGAATTGGAAACAATTTATGAAATTATCAATGATTCAGCCGTGGTTTATAAAGACAGGATTCCTACCGACAGATGGAAGGAACCTTACATGCCCGTGGATGAATTAAAGGAGCAGATCAGAGATGGCGTGGTGTTCTATTGTTTTGAAGATAAGGGATGCCTTCTTGGCGTCATGGGGATTCAGGACCGGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2521746-2524185 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029701.1 Akkermansia muciniphila strain EB-AMDK-40 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2521746 33 100.0 35 ................................. TCTTTGTTATCCACTATAGCTTATGTTTTGCTCCC 2521814 33 100.0 34 ................................. TATTTGTTTAGTTTAGTTTAGTTGTTGTACCTAT 2521881 33 100.0 35 ................................. TCTACCTCTTCCCGTTCGTAACCCGGGCAGGTGGA 2521949 33 100.0 34 ................................. TTTCAATACCTGTTCCATGTCGTACATTTTCAAT 2522016 33 100.0 34 ................................. CGTACCTAACATGAATAAGGGCAGGGGAATAACC 2522083 33 100.0 34 ................................. CGATAGGTACGACGGATAGCTCCTGGCGTAACGG 2522150 33 100.0 34 ................................. ACGTCCTGGCCGTTATTGCCATTGCCGTTGACAA 2522217 33 100.0 33 ................................. GGATTGAACTTAAACGCGATAGCATCCTTCGGA 2522283 33 100.0 34 ................................. CGCTTCATCCACGAATCCATGGCCCCGGCGATAC 2522350 33 100.0 33 ................................. CTCATACAACCCGGTAGCCTATCAGAGCGAACT 2522416 33 100.0 33 ................................. TCATCCTCCTGTGGGCCTACCGCGAACTGAACG 2522482 33 100.0 33 ................................. CGGTCGATGATTTCATTGACCCACACAGGCCCC 2522548 33 100.0 33 ................................. CATGTTTCGGGCAATGGACTTGGCCAAGGCACC 2522614 33 100.0 34 ................................. CATGAACCCGGTGCCTCCGGTTACGTCAACAGCA 2522681 33 100.0 34 ................................. ATGACCGGATAAGTTTAATTGTCGGAGCTTTGCT 2522748 33 100.0 34 ................................. ATTTTCAATCCCCACAGCATCACCTTGAGGTTGG 2522815 33 100.0 33 ................................. CCATGTCCTTGGTGGTCAGGGCCTGATACTCCG 2522881 33 100.0 34 ................................. CCCAGCGCGAAGTGCATTTAGAATCTTCTCCTGC 2522948 33 100.0 34 ................................. ACAAAAATGATGGAAAATAATATTGACAAGCCAG 2523015 33 100.0 33 ................................. CATAGCTCACCCCGGAGGTCGCGTCAACGGCTT 2523081 33 100.0 34 ................................. CCATGGTCAGCACCTTGTTGGTAATCTCATGCTG 2523148 33 100.0 34 ................................. CTATATTGTAACCACTAAGTGCAAGTTGGTAGAG 2523215 33 100.0 34 ................................. ACGTAACCGCGCCATTCTTCATGGCTGCGGGCTT 2523282 33 100.0 34 ................................. TTCTTTTTCCTTTGCATTGTAGTAAGTCGTTGAT 2523349 33 100.0 35 ................................. CCTAAAAATGGACATGTGGAGTCCACCCGCATTGT 2523417 33 100.0 34 ................................. CAAAAATATGGCAAGGTTCAGATTCCCCTTCGAG 2523484 33 100.0 34 ................................. CGCCTCAAAGCGGAGGGGGACGTCCCCGGTGGGT 2523551 33 100.0 34 ................................. ATAATTACCGTCCCCATCACATTTGACATTGAGC 2523618 33 100.0 35 ................................. TTCTTCCAATCCGGCTCTGGCCCGGTTCCAGCGTT 2523686 33 100.0 34 ................................. TGTGACTATTTGCTTATATATGAGATAGTCGGTT 2523753 33 100.0 34 ................................. TTTACGATGGATAATAGTGAGTATTGTGTATTAA 2523820 33 100.0 34 ................................. TCATGACACAAGGCAGTCACCTTAGGCTTTTCTG 2523887 33 100.0 34 ................................. CAATGAATCCGCACAGGCGGCGGCCTCCCGGAAG 2523954 33 100.0 33 ................................. ATCATGATGGATAGTAAGCAGGGCAAGAAAGCC 2524020 33 100.0 33 ................................. TGGATATAGGTTTCGTCGATGACATTGCAGGTC 2524086 33 100.0 34 ................................. CGTGAGGATCGCCAGCTTTTCGGCGTCGTTTTTG 2524153 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 37 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTTCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : CAGCCCCAGGGCATTAGTGGGAATCAACTTGGAATGTCGCCCTCCGCAAGGAGTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2923336-2919349 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029701.1 Akkermansia muciniphila strain EB-AMDK-40 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2923335 31 100.0 35 ............................... CGGGTAGGTGAAAAAGTCCCATGTCTTAGGTGCCA 2923269 31 100.0 33 ............................... TTGTGGAGCAGTTTGGAAATGGCTAAATGGAGT 2923205 31 100.0 34 ............................... GCAATTATTGCACTTTACCGCATCCCCACGGCCA 2923140 31 100.0 34 ............................... GCTAAAGCTCATACTAGTAACTTTATGGCCGTAG 2923075 31 100.0 34 ............................... GTGTCGATGACGGCGGCCTGCTCCGTCTTCTTCT 2923010 31 100.0 33 ............................... AGTGTATTCCATGGGTAAATTCCTTTACTGATT 2922946 31 100.0 34 ............................... TTCGTTCATTGTATATTATGGTTAGGTTTTATTT 2922881 31 100.0 34 ............................... CGCCTGATGCGGGACTACGGAAAATACAGCGCAG 2922816 31 100.0 34 ............................... CGCGGAATCCGGGGATGCCAGGAACCTGACGGAG 2922751 31 100.0 34 ............................... GTGTGGAGTTCATTGCCCCACATGGGGCGACTAA 2922686 31 100.0 34 ............................... CAATCGGTTTCCTATAACGTAGGCTACGCGGTCG 2922621 31 100.0 34 ............................... AAAGGCGGAGTAGGAGTCAACGTTGGCCAGCTCC 2922556 31 100.0 34 ............................... GGGCTCCTTGTCATATCCCTCTATGCAGGTGACG 2922491 31 100.0 33 ............................... GACAAGTCCCAGGTGAACCGAGCCCTTGCCATG 2922427 31 100.0 34 ............................... CGGGGGAACAATGATGACCGGAGAATCTTGTTGT 2922362 31 100.0 34 ............................... CCTACCTCAAGCTCTGGCAGTCCTCCAGCGAAGA 2922297 31 100.0 33 ............................... CGTGATATAGAAACTGCAACCGCGCCGGGTCAT 2922233 31 100.0 34 ............................... TAATACGGAATACCAGCACAAAATCTGCGTGAAG 2922168 31 100.0 34 ............................... GGAGACCAGCCACTGAATGAGGGCTGGGACAAGG 2922103 31 100.0 35 ............................... TTCAACGACTTGTCGGACGTGTTGCGAGAGTACAA 2922037 31 100.0 34 ............................... CTATTGTGGAATACAAACCAACGGGGGTTAGTAG 2921972 31 100.0 33 ............................... CCCTAACAGGAAGCCAGTCAGCCAGGATGATGA 2921908 31 100.0 33 ............................... CAAGGCATCAATTACGAGGTAGGCACTGGTCTG 2921844 31 100.0 34 ............................... TGTTTCAGGTCCACGTTGGAGTCATAGATGGTAT 2921779 31 100.0 34 ............................... TCATTTTCAGCTCGACGGGAACCAATATAGGATT 2921714 31 100.0 33 ............................... CTATATTGTAACCACTAAGTGCAAGTTGGTAGA 2921650 31 100.0 33 ............................... CGGGTAGGTGAAAAAGTCCCATGTCTTAGGTGC 2921586 31 100.0 33 ............................... TGTTCTTCGTAATATTGTGCAAGTCCGCTACCC 2921522 31 100.0 34 ............................... GTCGAACAGGGCAAGGTGCAAGTGTTCATCTACC 2921457 31 100.0 34 ............................... TCCATGCTGAATTCTACCTTCGGATTGCTGGAAA 2921392 31 100.0 34 ............................... CTTTGCTACTCCTGCGGGCAGGAACCCGGCAAGG 2921327 31 100.0 33 ............................... TATTGGGTTATAGTCAATCATTTTCTTAGTCAA 2921263 31 100.0 34 ............................... CGTTCGTGCTAACCATTGTAAAATCAATCAGTCT 2921198 31 100.0 34 ............................... CGTCCGCTTCCACGTCGGCTAAATGAAAGGCGTA 2921133 31 100.0 33 ............................... TGCAGCGATTGCCGCAGGGCGAGGTTGTTGGCC 2921069 31 100.0 35 ............................... TTTCACGCGCTTCTTCCGGCTTAATATCATAGCAG 2921003 31 100.0 35 ............................... TTTCACGCGCTTCTTCCGGCTTAATATCATAGCAG 2920937 31 100.0 34 ............................... TTCCTCCTGTTCCGTTTCTGCGGTTTCCGCCCCT 2920872 31 100.0 34 ............................... AACGTCCTGCTCAATATCAGAAAGGCACCCCTTG 2920807 31 100.0 35 ............................... AAATGACTAAATTAGTTTTTAACGCATCTGATTCT 2920741 31 100.0 33 ............................... ACCTCACCATCGGAAATAATCGTGTCGGTCAGG 2920677 31 100.0 33 ............................... CCTCCATCAGATCCTCCACCGTCGCGCTTCCGC 2920613 31 100.0 34 ............................... CAGGACCCGGACGGCAGGGATTACCTGTCCACAC 2920548 31 100.0 34 ............................... CCCCGCTTTAACCTTTTTACACAACCTGACAATG 2920483 31 100.0 36 ............................... CAGAAAAAATCACTCCATCCAGGGAGACGGCGTCCC 2920416 31 100.0 34 ............................... CCGGCGCCGCGAGCGGGAAAGGCGTCATTACGCC 2920351 31 100.0 34 ............................... TACGAAATCCTTCGCAATAATCCGGTCCGCAGGA 2920286 31 100.0 34 ............................... CGGACTGCGCAATAACAATCCTGTAGGTAGCGGA 2920221 31 100.0 34 ............................... TCTGCGGAGAGCATCATGCGGCCATATCCGCCGC 2920156 31 100.0 34 ............................... TTGGGAAAGCTGGAGAAGGGTTGGTGACGGTAAA 2920091 31 100.0 34 ............................... AATAACCCATACCCACTGATTCAGATTAATGGAG 2920026 31 100.0 33 ............................... ATCTACCTGGATTTCCGCGAGGTGGTGAAGGAA 2919962 31 100.0 35 ............................... TTTTTCCCTCTTGACTTTCGTCCCTTCTTTTTGCG 2919896 31 100.0 34 ............................... TTCCACGTCCACTTTTTGCGGCTTGCCGTGTCCC 2919831 31 100.0 34 ............................... TGTTATCGGATAATCTGTTTTTAGATATTGGCGC 2919766 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 2919702 31 100.0 34 ............................... CTGGTCTGGTAGCAAGGCAGGTTGGTTTGGAATT 2919637 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 2919573 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 2919509 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 2919444 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 2919379 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== ==================================== ================== 62 31 99.8 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACTCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : TCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //