Array 1 759-2315 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMI01000118.1 Thermus scotoductus strain 15_S15 NODE_206_length_2880_cov_119.288_ID_411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 759 29 100.0 33 ............................. CGAACCCAGTACTCTCGGTCATAAAAACACAGC 821 29 100.0 33 ............................. TGATGGGGATCAGCCGGAGACGACCGGGCTGCC 883 29 100.0 32 ............................. CCCCTCAATCAGCGCAGTCATGCGTCCTCCCT 944 29 100.0 33 ............................. GCCTGTTTCGCCAGAGCTAGCGGGTCCACACGC 1006 29 100.0 32 ............................. TATGCGGAGGATGACACCAACGGCCACCCCCA 1067 29 96.6 32 ............................T GACCCGGCCAGCGTCCCGGCGGGCGTACATCA 1128 29 100.0 32 ............................. CATTCCCGCCCTACCTGCACGCAGACGCCCAG 1189 29 100.0 32 ............................. GGCGTCCACGAGGAGGAAGGGATGAAGACTCT 1250 29 100.0 32 ............................. GTTAGAGAACAAGCCCACGATGGCCTGGGCGG 1311 29 100.0 32 ............................. GCCCATGCCCTTGACTTTCCGCATTCCTCCGC 1372 29 96.6 32 ............................T GTGCCCGGTGGGCTGATGGGGCTGATGGGGCT 1433 29 100.0 31 ............................. TAGCAATGGGCGTCATCCAGGACATATCCAC 1493 29 100.0 32 ............................. AGAGAGCGAGCCTCAGGGCTGGAATGGACACG 1554 29 100.0 31 ............................. AAAGCGGCCTTCCCCCTCTTCCCGGAACCGA 1614 29 100.0 32 ............................. CCCCTCCGGCACGCTAGTCCCCCTGACTTTAG 1675 29 100.0 33 ............................. AGGGCCACGCCCAAACACGAACCCGGACCACTC 1737 29 100.0 32 ............................. GTTCTCCGCCGCATCCAGGACCCACTGAATGA 1798 29 96.6 32 ............................T CCCGGGCTAGCTGGCCAAACGCATCAAGGAGG 1859 29 100.0 32 ............................. ACGTCATCCCACGAGTCTATTCGCCGCCACCC 1920 29 100.0 32 ............................. AGTCCGGTGGGGGTGGCGGTCCTGTCATTGAC 1981 29 100.0 32 ............................. AACACCCAGCAATCTATGGCCTGGAAGACGTC 2042 29 100.0 32 ............................. ACCTGATTAGGGTCAGTATAGGCCAGTGTTCC 2103 29 100.0 32 ............................. AGACTATTTTCAATGGCCGCCTCGTGCGGGAT 2164 29 100.0 32 ............................. AGACGGCCCTTATCCACCACCTCAATCCGCCG 2225 29 96.6 33 ............................A GTGTCGTTCAAATACACCGGGTACAGCCCGGAC 2287 29 89.7 0 ..............C........A...T. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.1 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : GGATCCAGGCGGTGAAGGAGAAGGGTGATGGCGGTGTGGCCTGGGGCCTTGCGCAGGCCCAGGTGGGGCAAGAGGTGGGGGTTGGCGCGGGCGAAGCGTTCCACGCCCCTCAGGGAGTCCACGCGGGAAAGAAAAGCCACCAGGATGAGGGCCAGGAGGCCCCAAAGGGGGTACTGCCGGTTGCGGGCCCGGGGGTCGGGGATCTGGGACAGGGCTTCGCGCAGGGTCATGCCCCCTCTTTACTCCAGGAGCCGCATATAGGTCAAGTCTGCTTCGGGTCCATAGTTGGAAGCATTATAGCCTAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGT # Right flank : GAGAATGTACAACCCACATTCCGCACCCCCTTCACTCCAGCAGGTAATATCGCCCGGCCCCCAGAAGGCGCACCGCGGTCTCGTGATGGGGAGCCAGGTTGAGGACGAGCAACTTGCCCCCCAGCTCCACCAGGCGGACCCACATAAAGAGTTGAAACACCCAGCGCAAGGTGGGCTTGGCTGTGGGTCTCCCCTTTTGATCCGGCAGGCTGGACCCCGTCCCCTCCAGCCTCCGCCTCAGCTCCCACTCCCCCAGGGCGTACACCAGAAGGGCCAGGGCCATCACCATCCCCAGGGCCATCACCCGCTCGGGCCGCTTCAAGAAGGTGCTCTCCGTAAAGAACAGGGGGTCTTTCAGAAACCGGAATCCCCGCTCCACCGTCCGGGCCTGGTCCTTGTACCGCCTCAGCACCTCCCAAGGGGGAAGCCCCTCCCGGTCCAGCACGTTCGTGGCCAGGATGAACCGCCCCAGCCCCCGCCTCGCCCGCTCCAGCTTCCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1029-1508 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMI01000108.1 Thermus scotoductus strain 15_S15 NODE_198_length_3080_cov_227.575_ID_395, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1029 36 100.0 35 .................................... GAGGCGTTTAGGGGGGAGGCTAAGCGGTATGAGAG 1100 36 100.0 38 .................................... CTACTATGTGGTGGGCAACACGGAGGAGCCAACGATGG 1174 36 100.0 42 .................................... TCTGACTTTTTCGTCCTTGAGGGCCTCGCTATAGGCCGTGTT 1252 36 100.0 43 .................................... TTGGACCCTTTCCCCACCTTCGCCTCGATCTCCTCGTAAATGG 1331 36 100.0 31 .................................... CGTGGGGGCGGCCCTACCTCTTCACCCTCCT 1398 36 100.0 39 .................................... AGCACTAGCTAAGATGGCAAAGAACTTGTTTGGTATTAA 1473 36 97.2 0 .................................C.. | ========== ====== ====== ====== ==================================== =========================================== ================== 7 36 99.6 38 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : AGTTTCCCAAGGGAGAGGCGGTGTACAAGCTTTTGTACCTGGAGTCTGAGCGGCAGGAAGGGAGGTGGGCGGAGCGGAGGTTGAAGGGTGTTGCCGAGGTGCAGGAGGTGTTGGAAGGGATGCTTCGGGAAAGGTATGCCCCCCGTACACAGACGCTTACACATAAATCTTGACACGACCGTATCGATTGGGTAAGTATTGGTCCGGTTCATCGCAAACGGTATAAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGCTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTTCTTATCGACCGCTTCTACAGTGGCTTCGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCAGGCTGGAAGCCTGGGTGGCTTGTCTTTTTGGCTCTGCCAAGCTTTGTTCGCCGCCTGCTCTCCCGTCCCTGGCAAATGGGAACTAAACGGGCTTTCTCGGTCGCCAGGGCAGTAGGTGGTGGTGACCTCCCTCCACCTTTATGAGCCGAATCCCCTCTAACGGTGGCGCAGGGTCTTGGCGGAAGGGGCATGGGAGCGGGGTCTCCTGCCGGTGTTCGGATTTCACAGGTTGCCGCCGGTTCCCTGTTATCCTCCATAACCAGGTGGTGGGCAATGTGGAGAACAACCCGCGACCCCGACGCCCTTAGGGCTAGTTTTATCGCCCTTCGGGAGGCGGTTAGGCGAAAGGCCCTGGCCCTCGAGGCGCGGTATGAGAGGAAAAGGCGCCCCCTGGAGCGGGCCCGCCAGGAGTTCTTGCAGCTGCTCGAACACCTTCGGCAGCAAGGGGCAGAAGGCCGTTACCCAGCCTCCTTGCTCAAGCCCGCCCTCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 987-2417 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMI01000019.1 Thermus scotoductus strain 15_S15 NODE_117_length_7054_cov_57.7726_ID_233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 987 29 100.0 30 ............................. CAGGGCGTGGGCATCGCCCTCGGGGTGGCC 1046 29 100.0 32 ............................. CGTAAATGGGCGGTAGGCAGACCTTCCGCCTC 1107 29 100.0 32 ............................. TGGGTCTATGGCCGCACCCGACAGGAAGTGGC 1168 29 100.0 32 ............................. CGCCCTGCATCCGTCACCTCACCAGAGGGGCA 1229 29 100.0 32 ............................. ATGGCGGAAGGCCTCTTACGGATCTGGCAGGC 1290 29 100.0 31 ............................. GGCCTTCTTTTTGCTTCTTTGGGGAGAGGAC 1350 29 100.0 32 ............................. ATAATCCCAGATGGCCGGAACAGCCCAAAGAA 1411 29 100.0 32 ............................. AGGCCGCGGAGCGCCGCGTAGAGAAGAAAACC 1472 29 100.0 32 ............................. TGGCTCCTGTCTCGCCTGGGCCGCCATCGTGG 1533 29 100.0 32 ............................. CGCCCTGCATCCGTCACCTCACCAGAGGGGCA 1594 29 100.0 32 ............................. ATGGCGGAAGGCCTCTTACGGATCTGGCAGGC 1655 29 100.0 31 ............................. GGCCTTCTTTTTGCTTCTTTGGGGAGAGGAC 1715 29 100.0 32 ............................. ATAATCCCAGATGGCCGGAACAGCCCAAAGAA 1776 29 100.0 32 ............................. CCCCCGTTGTTGATGAGGGCGGGCCTAGGGAA 1837 29 100.0 33 ............................. GCGCGCCTAGCCGTTTGCCACCGGATCGGGACC 1899 29 100.0 32 ............................. TTCCTCCACGATTTCCCCCAGGGGGCGGAGGC 1960 29 100.0 33 ............................. GATGTAGTCCCTGGCGTCCTGCACGATGGCCGC 2022 29 100.0 32 ............................. AGGCCGCGGAGCGCCGCGTAGAGAAGAAAACC 2083 29 100.0 32 ............................. TGGCTCCTGTCTCGCCTGGGCCGCCATCGTGG 2144 29 100.0 32 ............................. GAGCGCGGGATGTCCAGGGGGGAGCTTGCAAA 2205 29 100.0 33 ............................. GCCCTCATAAAGGGGAAGTCGGCCCAAACGCCG 2267 29 100.0 32 ............................. CTCCTGCTTGGGCCGGGGCCCCAGCCGAAGCG 2328 29 100.0 32 ............................. GTGTCATAGAGGCTAGCCACAGAGGAATCAAA 2389 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCTTGAAGGTGGTCTACGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGATTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGCGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : GCCTATCCATACGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGCATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGCCATTTTTCCCGGGGTTGCCCCATACAATGCGGTGAAGATCACGTAGTAGGCCCAGCTGGGTATCCAGTTGAAGAGGAGGTCCTGGACGAAGGTGGTGGTTTGCGCCAGGGGGCTTATCCCGGCCAGGGCCATCAGGAGGAAGCTCAGGGGAACCAGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1139-883 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMI01000151.1 Thermus scotoductus strain 15_S15 NODE_236_length_2031_cov_42.2353_ID_471, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1138 36 100.0 37 .................................... TCCAAGAGCCACTCCAGGTTGAGGCGCTTGAGGAACT 1065 36 100.0 40 .................................... AAGTGTACGTAGTCGACCTTCTTCACCGACTCCTTCACCT 989 36 100.0 35 .................................... CTTCCAGACTAGGGCCGGGCACTCCACGCCATCAG 918 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 100.0 38 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : CCAGCGAAGGCCCTAAATACCCAGGATGTCTTGGAACCTGCGCAGCGGACTTCGGGGGGCAAAACCCCTCCCCGAAGTCCGAGGCCTAGCCCCCCAAAGCCGGAGACCTACCACCGGACCCATACAACCGGCGGGCCGGGGATCATACTATACACAGCTGCATTTTTGTGCCGCAAAGGAAACTACTAAACCCGTAAGGATTGGAGCGTGCGTACTCTACACGACTTCCTTGCACTCTATTGAACTCAGTCAAGCGTTACGTTCAAGTGGTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCGGGTTTGGCAATATGGACGGGTCCTGGCAAACAGTATGGAAAAATTTCCTCGAGGGTGCCTGCCGTGGCTCGGGCGATGAAGTGGATCGGTGTGGTCATCCGGACGACCCAGGGGGGATCCGTGGATTACGTCCCGTTCCCCGCCCTGGGGGAGGCCAGGGGATGGGCCAGAAAGGAAAAGATGGGTGAGGCCGTCCCTTTTCCCCAGCCCAGGTGGCTTTTCCCTTACCCGGGGGAAGAGTGGTGGGTGGGCTACCAGGAGGGAGGGGAGGTGAAGGTGGTGGCCGTTTTTCCCAAAAGGCTTAGGGCCCTTCCTGATGTGCCCATCCTGTTCCGCTATGCGGAGTACCTGAAGGAGCTCATGGGCCCGGACGCCTCCTCCGACGAACCACGCGCGCGAACTAGGGAGGCTCCTCCCTAGCCCTCGAGGCCAGTACCCTTCTTAGCTACACATCGCGCTACTCCTCGGCGTGAAGCCCAGGTTGTGATAGAACGTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 2406-2818 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMI01000387.1 Thermus scotoductus strain 15_S15 NODE_62_length_12770_cov_49.8984_ID_123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2406 36 100.0 37 .................................... CCCAGGGCCACGGCCATTGCTGTAAGCCCTACCACTA 2479 36 100.0 37 .................................... TCGTCGTACTCCTTGTACATCCACTCCTCGTAGCTAA 2552 36 100.0 41 .................................... GATGAAGCGGTAGGCGGGGAGAAGGTTCCGGCGCACCTCGT 2629 36 100.0 41 .................................... GATGAAGCGGTAGGCGGGGAGAAGGTTCCGGCGCACCTCGT 2706 36 100.0 41 .................................... TACCCTCGCACTGAGGGCATTCCTCGTACAGCTCAGCCGGG 2783 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 100.0 40 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : GGAGCGCTTCCACCAGGAAGCCACCCACCCCCTGCGCTTCCGAAAGACCTACGCCGAGCTCCTGGACACCCAGGCGGCAAGGCTCAAGGCGGCCATAGTCAAGAGGGAACCCTACACGCCCTATTACCTAAAGTGACCTATTCACCTTTGGAAGCCCACTTGACACGCCGCAAAGGAATGGTATCGATTGGGTAAGTATTGGTCCGGTTCATCGCAAACGGTATAAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGGTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCAGGCCACCAGCCTGGGTATTTTGTTTTTATGAAGCGCCTCTATGCCATTGCCTACGACATCCCGGACGACAACCGCAGGGTCAAGATGGCTAACCTGTTGAAAAGCTACGGGGAGCGTGTGCAGCTTTCCGTGTTTGAGTGCTACCTGGACGAAGAGCTTCTCAACGACCTGCGCACCCGAGCCAGAAAGGTGCTGGACCTCTCTCAGGATGCCCTGCGCATCTATCCCGTGTCGGGCGAGGTCCAGATTTTGGGCGTGGGGCGGGTTTACGAGCTGGAGGCCTTTGGGCTGGCCTAGGCCGTGTGCAGATGTCGCCCGGCCCCGGTTCCTTCTGTGGCATCCTAAGAATCATGCAAGACCTGGCTACCCTTTGGGAGGAGTACAAACAGGCGGTACGGGCAGGAGGGGATGCCGTGGGTCTTTACCGGGAGCGCGTCTGGCCTGCCCTGCTGGAACGCTGGCGGCAGGAACCCCCCGTCCACCCTTCGCCTCAGGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 1473-835 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMI01000394.1 Thermus scotoductus strain 15_S15 NODE_69_length_11750_cov_46.9653_ID_137, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1472 29 100.0 32 ............................. TCTTTGCGGCTTTCTGGTGGGGGGTTGCGGCT 1411 29 100.0 31 ............................. GAGGCAAAACCGGTTGAGAGGAGGGGGGCAC 1351 29 100.0 32 ............................. CTCCTGAGCCTAAGCCAGAGGAGAACCCGGAT 1290 29 100.0 32 ............................. CTGACCGATGACCCGATGGTGGATTACATCGG 1229 29 100.0 32 ............................. AACCCCCAACAGCTAGCCACCGAACCCTCGGT 1168 29 100.0 32 ............................. CTGGTCAAACAGTCTTCGTTTGGGCGCTATGT 1107 29 100.0 32 ............................. AGCTGGACTGGCTGATAGCCCTGCTTGAGGCC 1046 29 100.0 32 ............................. CGGCGTTGGGAGAGGAGGGTGTCCACCGGCCC 985 29 100.0 32 ............................. CTGAACGATCTGTTGGCAAAGGGGTCCAGTGC 924 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 863 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.4 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGTGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTGCGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : GTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGGAGCCCTCCCCACCGGGTTTGGGGCCACTCTCCGCTTAGGGATGCGGGCTCAAGCCTAATACCCTCCCCGGGCTAAAGCACTGGGTGTGGTGCGCGAAAGCCATCTTTCGCGAACATGTACCTGGCACCCTATGCTTGGCTAACCAGAACCGGTTTCGGAATGTTGAGGGAGATCCCGGAGCACCTATTGGCCCTGGGGGTGGACCCGGTCACCGACAGGAAGCACTCCTGGGATGGACCCGAGATGGAGGCGGTGCCGGGCCACCCCCGGGTCCTGCGCCCCCTCAACTACAGCCCGGCCACCCCTAGGAAGGGCTTCGCGGTTTTAGAACAAGTTGGGAACCCATACCCATGTCCCCACCCTGGACACCCGGGTGCTGCCCAAAGGTACAGCCTACGTCTCCGACGTGGGGAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //