Array 1 31-651 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLX01000016.1 Salmonella enterica subsp. enterica serovar Heidelberg str. RI-11-014319 SEEH4319_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 92 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 153 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [195] 195 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 256 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 317 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 378 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 439 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 500 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 561 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 622 29 96.6 0 A............................ | A [648] ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.2 30 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTTCATCAGGCACTACCGGCACTTTCTGGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108853-109672 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLX01000025.1 Salmonella enterica subsp. enterica serovar Heidelberg str. RI-11-014319 SEEH4319_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108853 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 108914 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 108975 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 109036 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 109097 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 109158 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 109219 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 109280 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 109341 29 100.0 31 ............................. AACAGGAACAGGAAAAAAAGATTTGTCCGGT 109401 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 109462 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 109523 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 109584 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 109645 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125931-126941 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLX01000025.1 Salmonella enterica subsp. enterica serovar Heidelberg str. RI-11-014319 SEEH4319_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 125931 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 125992 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 126053 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 126114 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 126181 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 126242 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 126303 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 126364 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 126425 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 126486 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 126547 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 126608 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 126669 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 126730 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 126791 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 126852 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 126913 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //