Array 1 2765-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUK01000112.1 Methylomonas koyamae strain R-45383 contig_1_(1..31000), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2764 29 100.0 32 ............................. ACTCTGCGCAAATCATCAAGATTTTCTAATGA 2703 29 100.0 32 ............................. AAACGCCGGCCGGCCCGGTCAACATGGGCATC 2642 29 100.0 32 ............................. CCAAAGGCGTCAGCGACACTGCCGCACCCGAC 2581 29 100.0 32 ............................. CGTTGGTGATTCAAATACCGGGGCCTGGTTGC 2520 29 100.0 32 ............................. CGTTTTTGTCCGCTATTGGATATGAAACATTG 2459 29 100.0 32 ............................. TCAAGTTGCTGGGGAATATCGCATGAATCAAG 2398 29 100.0 32 ............................. TACTCGATGATCACAGATGGAAAATTGATCCA 2337 29 100.0 32 ............................. CCAGCGGCGACGGCTTGATCCAAGCCGGATTT 2276 29 100.0 32 ............................. CTGAATCCGATCGCGGACGTGGGGCCAATTGC 2215 29 100.0 32 ............................. GCCGACGCTCGATTTTGCCAACGCGTCGGCGA 2154 29 100.0 33 ............................. TTGCCATTTATCCTCCTAGGGATTCATGTTGCT 2092 29 100.0 32 ............................. AACGAATTGAATTTGCGCGCTCCCCGTACTAG 2031 29 96.6 33 ............................A GGAGGCGTCGATGAAATTATTAACGCCGATTAC 1969 29 100.0 32 ............................. AACCATCGATTACATCCAAAGTCATGCCCGGA 1908 29 100.0 32 ............................. GCTGCCTATTATTTTTGTATTCATCGCGCGAT 1847 29 100.0 32 ............................. GCGTTGACGGTGTTGGCGTCAGGGTCGGCGGT 1786 29 100.0 32 ............................. TGGTTAGTTGGGCGCGACAATATCCTGTGATA 1725 29 100.0 32 ............................. ACCACATTGCCGAACGAGTCGTACACAGTAAG 1664 29 100.0 32 ............................. ACGTTTTTTGTTATCCGTCACATTTTTTACAA 1603 29 100.0 32 ............................. GCCAACAGCGGCGCGACGGTGACCTTGCCGGG 1542 29 100.0 32 ............................. TTTGTACATTGCGGATGGATATTCAGAATTGT 1481 29 100.0 32 ............................. TCTGGCTATTCGTTTACTCGATCTGAGAACTG 1420 29 100.0 32 ............................. ACCCGCTGGATGCGTTCGCGCAATTGGCTGAT 1359 29 100.0 32 ............................. TCGCCGATTTCGTCGATTTCGGCGTATTTGTC 1298 29 100.0 32 ............................. GCTTATGCGGAAATGGCACCGCTGTTGATGCG 1237 29 100.0 32 ............................. TTGAGCATGTCTGTTTTAACTCCGTGATTGAT 1176 29 100.0 32 ............................. GTTACGCCGTCGGGCATCACGTACTGGGAGCA 1115 29 100.0 32 ............................. CAGAACGCCCCAAGGCGGCGCACTGCCAGCGC 1054 29 100.0 32 ............................. TTTTGCGCCGCCGGCGGCGTGGTCACCGACTA 993 29 100.0 32 ............................. GCAAGATCGACGACCGCCTTCAGGAACGCAAC 932 29 100.0 32 ............................. ACGACGACTTTGGCCACTACGCAAATAGTGCG 871 29 100.0 32 ............................. ACCACCGAGCGCGCGACCACTGCGACGAATCA 810 29 100.0 32 ............................. ACGACGGTAGCTATTTGATCACGCTGCGAAAT 749 29 100.0 32 ............................. CGGTATTTCGCGGCCGAGTCGGCCATCGAATC 688 29 100.0 32 ............................. GCTGCCGGCGTTTTGCCCATCCAGCGCGGCGC 627 29 100.0 32 ............................. CGCCTTACGCTGCGCGGTCAAACCGTCCCGCT 566 29 100.0 32 ............................. GACGGGTTGATGGTTGAGATTCGTTTCAACGG 505 29 100.0 32 ............................. TCCCCAAACGCCGTCGATTGCCCAGTGATTAG 444 29 100.0 32 ............................. CTGTCGAAAGAGCCGGTCGCGGTGCCGTCGAA 383 29 100.0 32 ............................. GCACCGGCGCCAGCTACCAAAGCAACAATGCG 322 29 100.0 32 ............................. TCGCCGAGGCTTTTTCCGCTGCGGCGGATGCT 261 29 100.0 32 ............................. ACGCCGGCGACCGATTTGGCCGGTTTTCTGAT 200 29 100.0 32 ............................. GCCTTTCGCATTTCGGGAATATCGTTCATCGA 139 29 100.0 32 ............................. CCTGACGGCCGCAGCTGGGCCATCGCCAAACA 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.9 32 GCGTTCCCCGCACCTGCGGGGATGAACCG # Left flank : GGCCATTCCCAATGCGGAGGGCATCGGCGATGTTGGTCATCGTAGTTGAAAACGTGCCGCCCAGGCTGCGCGGACGCTTGGCGGTGTGGCTGATCGAAATCCGCGCCGGGGTTTACGTCGGCGACTTGTCGGCCAAGGTGCGGGAAATGATTTGGTCGCAAGTCGAGCAGGGCTTAGAGGAGGGCAACGCCGTGATGGTATGGAGTACCAATACCGAATCCGGCTTCGATTTCCTGACGCTGGGCAAAAACCGTCGGCTGCCTGTGGAACTGGACGGCTTGAAACTGGTGTCGTTTTTTCCGCCGGACGATGCCGATTCGTCTCCCTCGCCCTAAGGGAGAGGGCCGGGGTGAAGGGAGAAATGCGCACTAAATTCCTGTTGGGGTATAGAGTGCTGCAAGGGCTTTCGCCCGCTTTTTAACAACTTGGAAAATACCGAAAAATTCGGTAGAAATTTCGGCCGGATGTTTCCGTTTATCTAACAATAAGTTAGCATTAGT # Right flank : GCGATACAGAGGCCGCACATCCGGCCAACTGACGCGTTCCCCGCACCTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2551-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUK01000018.1 Methylomonas koyamae strain R-45383 contig_115_(78..11033), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2550 28 100.0 32 ............................ GCCCACGTCGGCAATTCGTGATGTATTGCTGA 2490 28 100.0 32 ............................ GCCAAGCAGCAATTCGGCTTTAAGCAGGTGTT 2430 28 100.0 32 ............................ ACGATGTGGTAAAGATAGGGCGCCTTCATGTC 2370 28 100.0 32 ............................ TCGCGCGCCTTACGCTGGGCTTCCGCTTCGAA 2310 28 100.0 32 ............................ AGCAATATAAATACTTTTTACAGGCACCGTCG 2250 28 100.0 32 ............................ GACACCGAATCCCGAAGCAGCTTGTAAACCGC 2190 28 100.0 32 ............................ TGACGGTTACCGTGACGACGGCCAATGTCGCC 2130 28 100.0 32 ............................ GATAGCTCGGCGGTATACGTCGCGGCCGGGCC 2070 28 100.0 32 ............................ TGTCCCAAGCCCGGCGTGAGTTCCACGCCGGT 2010 28 100.0 32 ............................ TTGCGTAGCCGGCCGGTCTTGACCGGTGCCGC 1950 28 100.0 32 ............................ AAGCGGCAACGCTATGCTCTGTATCCCACTGC 1890 28 100.0 32 ............................ GGTGAAGTCCAAGATCGTGATGGCGATCACCG 1830 28 100.0 32 ............................ GTAAGCATGCCGGTTGAACATAGCGCCCAAGT 1770 28 100.0 32 ............................ GGTCCAGCCGGTTTGCAGGATGTCGTTGCTGA 1710 28 100.0 32 ............................ AGCGATTTCGATTTCCCGCTGAATGTCGAGTT 1650 28 100.0 32 ............................ ATATGGCCGGAGATTCCGACCATTGCCGCGTT 1590 28 100.0 32 ............................ AATCGATATGATTGCTTTGTCAGTGCACGGAA 1530 28 100.0 32 ............................ CGCCGCCGTGATGCGTCATTTCGGCCGCTATG 1470 28 100.0 32 ............................ TGCTCCTGAAAAACTGAAAAAACGGATGGTCA 1410 28 100.0 32 ............................ CTGAAAACCTCGGCCGGTACCGGCTACCGTGT 1350 28 100.0 32 ............................ AACCGATGTCCCCCGTCGGCGGTTTCGTAAGT 1290 28 100.0 32 ............................ AAGACGTTTACGCTAGACATCCAAGCGCCCGC 1230 28 100.0 32 ............................ TATATCGCGACCGGCGTAGTGCCGCCGTCCGG 1170 28 100.0 32 ............................ GGCACCACGGTGGACTTGCAGATCGAGGTCAA 1110 28 100.0 32 ............................ GCTTAGCAACTCAGCCGGACACATAGACAAAT 1050 28 100.0 32 ............................ ACGCTGCTGCGTTCCGAATTCCCCACCGAAAG 990 28 100.0 32 ............................ AGCGGATGTTCGTGGTCGATTTGCGCCAGTTC 930 28 100.0 32 ............................ GAGCACCGTTATTCGATCGACGCGCAAATCAT 870 28 100.0 32 ............................ GTCGTGGAATACGCTGGAAAATAGCGCACCAA 810 28 100.0 33 ............................ ATCCCGTCAGCACTAGATTTAGCTCAGACTCAA 749 28 100.0 32 ............................ ATAGCCCGCAACGAGAGAGCAACCAGTTCGCC 689 28 100.0 32 ............................ ACTCATCGCCCCTGATACTCATTCCAACACCT 629 28 100.0 32 ............................ TACACGCCGGAGCATTGCATAGCGCAGATCAA 569 28 100.0 32 ............................ GTTCAGAATTGCGGACAGCTCGCCTTGGTTGA 509 28 100.0 32 ............................ GGTAATTTTCGCCAGCTCCGCATTAGTCAAGC 449 28 100.0 32 ............................ TGGATGGCACGCCGATCAAGAACGCCGACGGC 389 28 100.0 32 ............................ ACATGCACCCCAGCACCGTGCTAGCCAAGGCC 329 28 100.0 33 ............................ CTGGATCGCTTTGCGCTTAACCGTTTCTCGGTC 268 28 100.0 32 ............................ GATGTCGCACCCGCAACCGACCGAAGAGAAAC 208 28 100.0 32 ............................ GATTCGCTGCACGGCGCTGGCAGTCTTCTCGG 148 28 100.0 32 ............................ AGTAACATTATTGCACCGAGAGTGAAAGTGCT 88 28 100.0 32 ............................ AACACTTTCCGCGCCATCAAACCCAAAAATTT 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 43 28 100.0 32 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Left flank : GTTTTCATGGTTTACCTACTGATGATTGGAAGTATTGTATCTGTAAGTTATTGCGAATAAAGGCCATTTCTTGAATTCATGATTCTTATCGCTGAACGCTGCTAATAATGTCGGCAGATGCTGTAATCCCGAGAATTGCTTAGCAGCCGCCAAACGTTATGCAGCCAATCTCGCCAACGCCCGCTTTCGGTGGCGCAATATAGTAGGCGCCGAGCGTATCGCCACGCCACGCCGTTTATTCGCTTGCAAAGTCTCAGCAACGGCCAAAGCTTTTGTTTGTGGATTGGCAAATCGGCCGTCGCGGCGCCGCTGGCAGGTCATTTCAGCACTTACGGTTTGAGCCGGACGGCCACTGTCCCCGAGTTTTGACCCAATTTTTTTCGCTCTTTAACAATGTGAACTAAATCAGCCGGTTACGGGTATTGGTTTTACGGATGGTAAAAATGGGTTAATCCGTCCGCAACCCTTGTCGCAACCGGCTTCCCGTTTATTTATAATCA # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1337-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUK01000158.1 Methylomonas koyamae strain R-45383 contig_2_(1..1386), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1336 29 100.0 32 ............................. CCCGCCGGCGTCGACGATCTGCGTTTGGTCTC 1275 29 100.0 32 ............................. GCTCAACGTAGCAGCTATGCTCGGGAAACAAC 1214 29 100.0 32 ............................. ATCGATGCCGATACGGCGGTGGTGCCGGATTT 1153 29 100.0 32 ............................. TATACAGCACCCAGGGCGGGCTACGCGTCCAC 1092 29 100.0 32 ............................. CTACCGATTGGGCATCATATCCGTTCCAGGCG 1031 29 100.0 32 ............................. TCGGTAATCCCGGTCGATTCATTACCGACCTA 970 29 96.6 32 ............................A GGCGGGGAAGTTGTTGGATTAGACGAATACAT 909 29 100.0 32 ............................. CACAGTGCTAGCCAAAGCCCGCGCTGGCGATA 848 29 100.0 32 ............................. TTCGGCAACCAAGACTTTGTCACCGTTGCTGA 787 29 100.0 32 ............................. CTAAAATGTCCAGGTTTGCTGAAAAAGCCGAT 726 29 100.0 32 ............................. ACGTAACCGAAGGCCGCAAACTGGCCAACCGC 665 29 100.0 32 ............................. TCTTGGTCCGAAGCTGGGTATCGGTATTCGCG 604 29 100.0 32 ............................. TCCCGGCATAAACCCACGCCATAATAGATACC 543 29 100.0 32 ............................. CCGGTATAAATTGATATACCAGCAACGATTAA 482 29 100.0 32 ............................. GTGCCTTGCTGGACATTGGATTATATTCAAAG 421 29 100.0 32 ............................. AGTTAGCGGACGCCAGCAAAGCCGAGGCCCAA 360 29 100.0 32 ............................. CTGATGGAAAAAAGCCGTCAGATTGGGATCTC 299 29 100.0 32 ............................. TTGTTGAGCTGGAACTGAATAACGCCGACGTG 238 29 100.0 32 ............................. TCCATGTCGCGGCCGGTTGGGACGATACGCGC 177 29 100.0 32 ............................. CTTGACCGGTAACGGTATTAGTGCCAACCGGA 116 29 100.0 32 ............................. TGGTACCAGCGTCCCAGGCCGAGGTAGCCCTG 55 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GCGTTCCCCGCACCTGCGGGGATGAACCG # Left flank : ACCTGCGGGGATGAACCGACAAAACCCAAACCCATTGGTCTGTTTGGTC # Right flank : TCCACTGCGCTAGGAGCCTGTCGGACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1709 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUK01000203.1 Methylomonas koyamae strain R-45383 contig_70_(1..12082), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ ATCGTTGGGCCGTTGTTGCCAGGATTGCAATC 61 28 100.0 32 ............................ AAATGGCCGGCTTGCCTGCATTTCTGTCAGCA 121 28 100.0 32 ............................ TTAGCCCTTTTAGGCAATTGCGAGGGTAGACA 181 28 100.0 32 ............................ TACACGCCGCCGCCGCTCTGCTCCACATCCAC 241 28 100.0 32 ............................ ATTGATTCTTGCCTCACGCAAGGCCCATGCTT 301 28 100.0 32 ............................ GCATGACATCGATAATCCGAAATCCAACACTT 361 28 100.0 32 ............................ ATTATGCTCAACGCCGTCGAGCAGTCGGCCGG 421 28 100.0 32 ............................ TTTGTTTGAGCCTGAGGTCGGCGCGCCTGTTA 481 28 100.0 32 ............................ TTAGCCCTTTTAGGCAATTGCGAGGGTAGACA 541 28 100.0 32 ............................ ATGTTCCCAGCGTCGAAATAGTCCAAATTCAA 601 28 100.0 32 ............................ ATTGGCGTAGTCGGTCAGGAAATCCAGCGGGT 661 28 100.0 32 ............................ AGCACCAAGGCTTGGTCGGTGCCAAGGTCATC 721 28 100.0 32 ............................ ATCAATAGGGAGCGAAGCGACGCACCGACAAA 781 28 100.0 32 ............................ TTGGATTGCACTACGACCGCGCCGCTGGGTTC 841 28 100.0 32 ............................ TATGCCCAGCCAAGAGAACCCGAGTCGGCACC 901 28 100.0 32 ............................ AGATCGCCGCAGTCGTAGAAGAAGCACACCTG 961 28 100.0 32 ............................ AGAACCGCACATGCATTTGACATGTCACCAGG 1021 28 100.0 32 ............................ TTACGCAACGGCGCCAGTTCCCAGCGAAATAA 1081 28 100.0 33 ............................ CTACATGCCGTCTACAGCTTTGCCAAAGCGCAG 1142 28 100.0 32 ............................ AGGCGTCGGCAAAACCCAGCGCGACATGCCAG 1202 28 100.0 32 ............................ GAACGCAGGGAAAGGGCCGCGCGCGGCCTCGT 1262 28 100.0 32 ............................ AGCATCAACCAAACCCTGGCCGCCGGCAAAAC 1322 28 100.0 32 ............................ TCAGCCAATATGGATCATCATTACTCACTAAT 1382 28 100.0 32 ............................ CGGATAACTTCGAGTCCGAGACGTCGTTAGAT 1442 28 100.0 32 ............................ CATCGCTCCGCCGATTAATCGACTCATGAACC 1502 28 100.0 32 ............................ GGAAGACGGCGGTTATCTGACGACATCCAAAC 1562 28 85.7 32 .....................A...CCG GATGGCCTTCGGCTCCGCTCAGGCACCGGGTC 1622 28 78.6 32 .......AG.....G..........CCG GATGGCCTTCGGCTTCGCTCAGGCACAGGGTT 1682 28 67.9 0 ..G..TT.T.....G....A...G.C.T | ========== ====== ====== ====== ============================ ================================= ================== 29 28 97.7 32 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Left flank : | # Right flank : TGTTTCGAACGACATCGATCTGCCCGAGTTCGGCGAACTGATCAGATAAAGCGGCAAGACGCACCGCGCATTCTCCGGCGCTCCGTGCCGAACAGCCGGCATTCTATTTTGAACATGCAACGGTGTGTGGTGAACATCGGGCGTCGGCCGATCAATATCCGGTAATCCTGTTTTAGCAGCCGGGTTTTTATTCTGAAGACGCACGCATTTAGCGCGGACACGCAACGTCGATTGTTTGTCAGGCAAGCAACAGTGATTTTTAGCCGGAGGCCAGTGTTGATCGGAGAACGTCCGATGTTGATCGGAGAACGTCCGGTGTTGATCGTAGAACGCCCGGTGTTGATTGGAGAACGCCCGGTGTTGATCGTAGAACGTCCGGTGTTGATCGTAGAACGTCCGGTGTTGATCGTAGAACGTCCGGTGTTGATCTTAGAACATCCGATGTTGATCGTAGAACGGCCGGTGTTGATCGGAGATCGCTCGATGTTCGCCAGAGAAGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //