Array 1 31034-29849 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032659.1 Lactiplantibacillus pentosus strain ZFM94 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 31033 28 100.0 29 ............................ TGCTGCTAGTATCACTAGCATAATGATTG 30976 28 100.0 33 ............................ CCTGTTGGTTGTTGCGTACATATGACCCAGTGC 30915 28 100.0 33 ............................ TGGTAGAAGCAACTCATAAAACGCATATGAGGT 30854 28 100.0 34 ............................ TAAAACAAATTGCCGTCAATCGTATTGTTGATAA 30792 28 100.0 33 ............................ TTTATCAGTGGCGGGAAATAATTTATCATGATT 30731 28 100.0 33 ............................ TAATACCGCCGGTCAAGTGAACGACTCCGTTCA 30670 28 100.0 33 ............................ CTTCCAACGATCAAGCGCGAGAAGAACGTCAGC 30609 28 100.0 33 ............................ CAAGTATTTAAACGAACTGGCTTAAAGCAATCT 30548 28 100.0 33 ............................ CTTGCAGGCCTCGAACCTGCGCCCCTAAACTTA 30487 28 100.0 33 ............................ CGTGGCGAGTGCCGAACGATTGGCAGAAGCATT 30426 28 100.0 33 ............................ TATCAGTGGCGCCGCTCATCGTTTTGGCCCGGT 30365 28 100.0 33 ............................ CGTATACGTTAACGTAGTATCTGGTTTCACCAG 30304 28 100.0 33 ............................ CGACTACATGAAAATCATTTATGGCTGGAAGCC 30243 28 100.0 33 ............................ TAGAAACTTGACGTAAGACTGCCATGTATAACC 30182 28 100.0 34 ............................ TTTCATGCAAACGGTTTTTCGGGAGTACGACAAA 30120 28 100.0 33 ............................ CGAGTACTGGCGGGCCGAGAAATATAACGATCC 30059 28 100.0 33 ............................ TTTTAATCATGACTAACTCCTCCAACCCTTTCA 29998 28 100.0 33 ............................ CCGCCCAGGGGCGAGCGGCCCAGACTGCTAAAG 29937 28 96.4 33 ..........C................. TGCCATCACAACACCGGACGACTGCTCCAAAAA 29876 28 89.3 0 ..........C......A...A...... | ========== ====== ====== ====== ============================ ================================== ================== 20 28 99.3 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TCGCTTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACTCGAACAGACATTGAATTTTTGGCAAAATTGCCACTGTTTGATGGAAATAGCTCAGAATAATATAACTAGTAGTAGTGAACCGCGCCGCAGAAACAGATTTAACGGATGATTTTATAGCCATTTTTGGCTTTATCAGTATTGTATGACCATTTAGACCGGTCAATTATAAATTCGTTTATACGGCAATTTTGGGCCGAATTCGAGCGATTCGCGAAATCTTGAGAAGCAATCATTTTTCAATGGCAATGCTAATTCAACTAAAATAATAATCACTTCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTAATGTAAAACCTCAATTTTGCAATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : TAAACAAAGCCTAAAATAAGAAAAAGTAACATGCAAATCACTCCAAATTTCTTGCGCATTGAAATATTTAGTAAGCGGTTATCATCCATAGAAACATAAGACCATCAACAAAAGTTTTAACGCATCAAAAAAATCACATCGCAATGGAAAATGCAGATGTGATCTTTCTGATTGTTCGATAGTTTTTTGCTGTTGAATCCGCTTATCAATACGATGCTCTGTTGAGGCGTAAAAGTAAACATCTTCAGTCCAAATATCCAACAATTTCAACTATGCTATCAATATCAACAAACAATGGATACGTCTCAGGTATCATCATTGCTTGCTCATCATCATAGTTATAGTGTAAATATCTAAAATTATAATGCGTATAAAATTCCAAGGCGTCTGGCAGTGAGCTAACGACTATTCCTATAAGACCGATGTTAAAAACGTGCCTCATCTTAATGACAGTTCTGAAAATATCAAGAATCATGCTCGCTCCAATATGCTTGGCTTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 279545-278337 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032659.1 Lactiplantibacillus pentosus strain ZFM94 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 279544 28 100.0 33 ............................ TATCCATCAATTAAATCAACTGAATTAATTGTA 279483 28 100.0 33 ............................ TAATAACCGGTTCTGGCAAGTAAGCGTTATAGC 279422 28 100.0 33 ............................ TTCGTTATCCATCGAAGTCAAACTCCGTCACGA 279361 28 100.0 33 ............................ TTCGTTATCCATCGAAGTCAAACTCCGTCACGA 279300 28 100.0 33 ............................ TTCGTTATCCATCGAAGTCAAACTCCGTCACGA 279239 28 100.0 33 ............................ TGATACGGTAATCGCTGTGGGCTAATTGGTAAG 279178 28 100.0 33 ............................ TGATACGGTAATCGCTGTGGGCTAATTGGTAAG 279117 28 100.0 33 ............................ CGATGGCGAAAACGAAGACGGAACAGATGAGGG 279056 28 100.0 33 ............................ CGCTGGGGGCGCCGCCCTCGATGACATCGGGGC 278995 28 96.4 34 ..........C................. TGATGATTGAGAGGCTATGAGATGAGTTTGATAG 278933 28 96.4 33 ..........C................. CGGCCCAGCTTAAAACTAGCCGGGCTAGCATTC 278872 28 89.3 10 ..........C...............GT CCTTCTCGTA Deletion [278835] 278834 28 96.4 33 ..........C................. TATGCCGAATACATTGAAAGTGGACAACGTACT 278773 28 92.9 137 ..........C..G.............. TATTACTGCGTCCCGATGGCAAATTATTGAATTTATTGGGATCATACCTTATAGTCAAAACACTAGCACTTCGACAAGTTGACCCAGAAAAGTCATTTTTATATTTTGGATTGTTGATTTACCGGCATTTGATTAGT 278608 28 85.7 33 ..A.......C.C..A............ TGATCGTTTTACCAGATTGGGTAGTAGCAGCGA 278547 28 85.7 33 ..A.......C.C..A............ CTGTCACTTCTGACTTTTCGTTTAGTGCTGTCA 278486 28 85.7 33 ..A.......C.C..A............ TATGAATTGGTACAACCACGACGAAATTCCATT 278425 28 89.3 33 ..A.........C..A............ TCCAATGTGACTAACCGAAATTTCTACGCTAGT 278364 28 82.1 0 ..A.........C..A..........TT | ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 19 28 94.7 38 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : ATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAGCAGGAAAACTATTGAAAATCGCTTATCCGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGCTCCCCCCAAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGTAGCAAGCTATTGGATTGATTTTTTAAAATTCTGGATATAGGTCAAACATTCACGCCTATTAAACGTGGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGTTTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTCGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TTATACAGTTTTTAGGAGGGCAAGGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAACGTATACCCTGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTAAAAATTAGCAGAATTATCTGGGAAGATTCAGTCCTTGATAAGGACAAAAATCACGTGTTTACAAGATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATCGAGAAGAACATTCTGAATTTGTTTTTGTAAATTCACGGCAAATTTTGAGTAAAAGAAAAGTCATACCATATTTAGAGAAAGTCTTGTTACAGTTTCTATAGATAATGAGAACTGTACCGCGTGACCTTTACGCTTGAAAGTGCAAAGAAAGAATTTGTA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2446354-2447907 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032659.1 Lactiplantibacillus pentosus strain ZFM94 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2446354 36 100.0 30 .................................... TGAAATGGGCGCAGTCAAGGCTGGATCACT 2446420 36 100.0 30 .................................... TATTTTCTATGCGCTGAAATTCTTTTAGGT 2446486 36 100.0 30 .................................... TTATGTACATGTTAAAGGCCGTTAAGTTTC 2446552 36 100.0 30 .................................... AAGAAAGCTCCGTAGCCTGTCGCGCAAGTT 2446618 36 100.0 30 .................................... TAAACACCATCATCACTAAGTAATCCAGAT 2446684 36 100.0 30 .................................... GCTAGTCAGCTGGAAGTTGATGGACTAAAA 2446750 36 100.0 30 .................................... ATTTAAAGGCTATCCCATCAATGGTTATAC 2446816 36 100.0 30 .................................... ACGCGATTGTTGCCTTGCGACCAATACTCT 2446882 36 100.0 30 .................................... GAGAATTACCGCGATCAACAAGAACGGGTC 2446948 36 100.0 30 .................................... AATAAGCCTTTTAATGCCTTGCTCAGGGCA 2447014 36 100.0 30 .................................... CAGCAATGTGAATCGAATCAGTGTCACAAT 2447080 36 100.0 30 .................................... GGGATGTCGGTCAGGGTGGTGAAGAAACCA 2447146 36 100.0 30 .................................... TAACGACGCTAAAGCCACGACCGCTAAAGC 2447212 36 100.0 30 .................................... AGCATACCCTGGTTGATTGCTCAGTGTGTC 2447278 36 100.0 30 .................................... TTACAACTTGCATCCGCCGTTAGTTTGGTA 2447344 36 100.0 30 .................................... ATTGTCTGAGACGTCGGTACCAGTAATCAA 2447410 36 100.0 30 .................................... TTCTCTTTTTCCGTAGTTATATAGTGTAAG 2447476 36 100.0 30 .................................... ATTCTGGCGCCGGTGGTTGGCCGGTGATCC 2447542 36 100.0 30 .................................... GGTGAGGTATGCGGTGAGATGGTTATCTGT 2447608 36 100.0 30 .................................... ATGGCTAAACTGAACAAAACACAGACGTAT 2447674 36 100.0 30 .................................... GTTATACCGTCTAAATACCCGCAACACTCA 2447740 36 100.0 30 .................................... CAACTTGAAGAAACTAGTTAAGAACATCCG 2447806 36 100.0 30 .................................... CGAACTGGCACTTGTACATCTAATGCATTT 2447872 36 94.4 0 .......................G..A......... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.8 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCCGATGAACAACAAGTGGCGGTCTTGGATCAAAGCCGAGCCATGATTGCCAAAGTAATGGAAGCCAGTTTTCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTGGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGTTTTTGAACAGCAAGTGGCAGATTTAGACATCACGGTTATTATCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTGGATTATGTGAGAATGCCG # Right flank : CAGGATTGTTTCGACCTGTCATCCGGGTCGCCGACAGTGGTCATTTTAAGCAGTTGTAGAATAACCCCCGTGTTACCGTACATCTTGAATAGTAATCACTCCCCCTCAACCCCAGGCCCACCAAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCAATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTCGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //