Array 1 2892005-2891676 **** Predicted by CRISPRDetect 2.4 *** >NC_013961.1 Erwinia amylovora CFBP1430, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2892004 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 2891944 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 2891884 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 2891824 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 2891764 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 2891703 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTTCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2903574-2901468 **** Predicted by CRISPRDetect 2.4 *** >NC_013961.1 Erwinia amylovora CFBP1430, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2903573 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 2903512 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 2903451 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 2903390 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 2903329 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 2903268 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 2903207 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 2903145 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 2903084 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 2903023 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 2902962 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 2902901 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 2902840 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 2902779 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 2902718 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 2902657 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 2902596 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 2902535 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 2902474 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 2902412 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 2902351 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 2902290 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 2902229 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 2902168 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 2902107 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 2902045 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 2901984 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 2901923 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 2901862 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 2901801 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 2901740 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 2901679 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 2901618 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 2901557 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 2901496 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2916705-2914481 **** Predicted by CRISPRDetect 2.4 *** >NC_013961.1 Erwinia amylovora CFBP1430, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2916704 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 2916643 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 2916582 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 2916521 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 2916460 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 2916399 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 2916338 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 2916277 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 2916216 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 2916155 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 2916094 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 2916033 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 2915972 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 2915911 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 2915850 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 2915789 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 2915728 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 2915667 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 2915606 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 2915545 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 2915484 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 2915423 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 2915362 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 2915301 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 2915240 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 2915179 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 2915118 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 2915057 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 2914996 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 2914935 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 2914874 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 2914813 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 2914752 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 2914691 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 2914630 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 2914569 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 2914508 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //