Array 1 59863-59230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWN010000028.1 Oscillochloris sp. ZM17-4 Scaffold_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 59862 37 100.0 39 ..................................... GTGCAGCCGGTGCAGCCGGTGCAGCCGGTGCGGGTGCCG 59786 37 100.0 36 ..................................... TCCGTCGTCGGCTCCAGCGTGATCGGGGTAAGTAGG 59713 37 100.0 37 ..................................... GCCCAGGGTAGTTGCTCTGGACCAGCAGCTGACCGTG 59639 37 100.0 37 ..................................... CTCGTACTCCCGATCCAAGCTCGGCTTGACGTACGGC 59565 37 100.0 37 ..................................... TCGTGCTGCTTGCACGTGTCGCTACTTAACAGGTTCG 59491 37 100.0 37 ..................................... CTCGCGCCTCCACATCGCCTGGACGTAGGGCTCGCCC 59417 37 100.0 38 ..................................... ATGATCTGGTCAGGGCTCAGAAGCCAGAAAACCGATGA 59342 37 100.0 38 ..................................... TAGTATACCACCGGCGCTGGGGCCTGGGTGGCCGTGGG 59267 37 83.8 0 .............................GGT.C.CT | A [59232] ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 98.2 38 CTCAGCAGCAGCCCACACCCCGCAAGGGGACGGAGAC # Left flank : CGACCTCGACAGCGCGGAGGCGATCCGCATCTTCCAGGCCGGGCTGCGCGAGGCGATCGGCGCGGCGCGGGCCATGGAGAATCAGCCCACCCCTGCGCTGCTGATCTCAGGCGGGCGCAAAGGCATGGCGGCGGTGGGGCTCTACGTGGCGCAGGCCGAGGCGCTCGGCGAGGTCTACCACACCACGATCACCGACCCCGGCATCGAGGCCGCGCTGCTGACGCGGGTCGAGAAGGAGCGGGGCGGGCCGCTCGGCCAGCTGGCCAGGCTGATGTTTCTGGACGAGCTGGAGCACGCCATGTTCGCCCTGATCGACGTGCCGGTCGTCGCCCTGCGGGCCAGCTCATTGGCGCACCGGTGACCACCTTAACAACTGAAGACTGCTCATATCGTAGGCAGTTCGGCCAAAATCGCACATGGCCCCGGTGAAGGTGGTCATTGGCCTATCGTGATTCAGCGCGTCACAAAGGCGAATCGTCGGCCAGCAGTGACGCGACCCC # Right flank : AAACATAAGGTGAGCGAGTCCGGGTGGCGCTAAACATAAGGTACGAGATCGGGCCGGTGGGGGCGAGATCGGCGCGCGGGAGGCGATCATCGCGAGGCAGATCGGGGCGGCGGGTGGCACGGCGGCAGGTGGGCGACGGGCGGCGACGGGCGGCGACAGGCGGCACCGGCGCTGCTTCCGCTGTTGGGCGCAGGGAGTCACGCCCCGGTGCCAAGGGTGAGTCGGCCCAGGTCGGGGTCAGGTCGCTCGGTTGTCGTCAGCGGGCGGCGCGTCCGTCGCTCCCCTGGCTGCCCACCACCACCACCACCGCGCGAATCAGCCGGGGATCATTGGCGTCGCCCGCCGCAGCTTAGCTCTGGGTCAGCTGCCCCTCCTCAGCGGCAGCGGCGGCGCGGACGCGGAGCAGCGCACGCACATTCAGAAGGGTGTAGCGCAGGGTGTTGGCGTTGACGATCGCCCGGCCCCGCCGCAGCTTCGGACGCAGGATATCCAGCGCCTCA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAGCAGCAGCCCACACCCCGCAAGGGGACGGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 72363-75091 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWN010000028.1 Oscillochloris sp. ZM17-4 Scaffold_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 72363 37 100.0 37 ..................................... ATAATTTTAAGTTGATATGATTTTTATTAATTTTACT 72437 37 100.0 39 ..................................... GCGATCCGGAGGTACCATGTGTATGATACCTGTCCGCTT 72513 37 100.0 37 ..................................... AGGGCGCCGATGGCGCCCCAGTTTCGGAGTCTCATTC 72587 37 100.0 40 ..................................... CGCCACCCAGGGGCAGCGGGGCGGGCTGTGGCGCGGACTG 72664 37 100.0 38 ..................................... CCGGGTTATCGATGTACTCCGACTTGAGGAAGGCCGTG 72739 37 100.0 40 ..................................... ATGGGCTTGAATGCGAGGATGAGGTTCATCGCTTCAATCG 72816 37 100.0 40 ..................................... AAGTCATCCTGCAGGCTCCACCATCCCGTCTCGGCCCAGG 72893 37 100.0 37 ..................................... GAGATGGGCGCCTTCGGCGCCCGGATGAGGTCGACAA 72967 37 100.0 37 ..................................... ATGGTCGCGCTCTGCAGCACGACCTCGGTCATCAGCG 73041 37 100.0 38 ..................................... TTGTGTTGGGGGGCACAGCCTGCCCCCCTGTTCCAGTT 73116 37 100.0 37 ..................................... CGTGATGCGGACGACGATGCCGGGGCTGATCCAGAAC 73190 37 100.0 37 ..................................... AGGTTCCCCTGCTCGTCACAGACCGCGCCCTGCTCGT 73264 37 100.0 38 ..................................... TTCCCAACACCACCGACGTAGTCCAACTTGAGCCAGAG 73339 37 100.0 37 ..................................... GGGTGAGCTCGGGACGTTCCCAAGCTGTGTGACGTTG 73413 37 100.0 38 ..................................... CATGTTGCCTGTGGCGATTGTGACCTGGTAGATGTCGA 73488 37 100.0 37 ..................................... AAGGCTAGGGGGTTGGCGTCGGACTCGCCGGCGTTGT 73562 37 100.0 38 ..................................... ATGCTAAGCATGCTCCCATGCTCAACACATGTCTGACC 73637 37 100.0 38 ..................................... ACGTTGCTGACTCGGGCTGTTCGGGGCGTGTAGCAAGG 73712 37 100.0 37 ..................................... CTCGACAGCAACTTTTGCCCAGGCCGTAAGGCTGTCG 73786 37 100.0 38 ..................................... ATGATCAGCTCGGTCAACACCACATCCGCATCTGTGGT 73861 37 100.0 37 ..................................... AGTGGCGGTTCTCACGAACCGTTGTCGTGCCCACCAC 73935 37 100.0 38 ..................................... AGATGTCAGCCTTATCACCCTTGATCCGCTCGCCCATG 74010 37 100.0 39 ..................................... TCAATCTGCCGCTGGGCGTCGTCCTGCAGTCGCTTACGC 74086 37 100.0 36 ..................................... TAGAGCGGGGCAACCGGCAAGCACAGTGATGCCGAC 74159 37 100.0 38 ..................................... ACGGACAGGGCAAACGTCTTGCTAGTCATCTCAAAATC 74234 37 100.0 36 ..................................... ACACTGGCCAGGATGACATAGAACGCCACCATGGAA 74307 37 100.0 39 ..................................... GCGGCCGGGGCCCCATACAGGCGGCCGGAGTAGCTAGTG 74383 37 100.0 37 ..................................... CCGGTGGTGTCGACACTAAAGTTAAACTCGGTTGGCG 74457 37 100.0 37 ..................................... TCTGCTCGGCAAAGCCGAGCTTGAGGGCCTCCTTTAC 74531 37 100.0 37 ..................................... CCCCTGGCGAGCGACCAGTCTAAGCTGGTCGAACTTG 74605 37 100.0 37 ..................................... CACTCGGTGCACTATTTTCAAATACGTAGTACCAGAC 74679 37 100.0 38 ..................................... GTTGCGGAATGGCTCCTCCCGGACATTGCTGTTAGCAG 74754 37 100.0 39 ..................................... GCCCGGCTGCGTCGATTGCGCCGCGAGCCGCTCAATAGT 74830 37 100.0 37 ..................................... ATCGCGGCCCCGAAGAGGCCGATCCCTGCGTAGCCAA 74904 37 97.3 37 ...................T................. TAGCACCGCTCCTGCACGTTCACCCCCACGCCCATAC 74978 37 100.0 40 ..................................... AAAGCGCAGCATATGACGCGTCATCGTGCGGCGCATGATC 75055 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 37 37 99.9 38 CTCAGCAGCACCCAGCGCCCCTCCGGGGGACGGAGAC # Left flank : GCTGGTCTTCGGCAGCCTGCTCGACCGCTGGAACGCCTGCGCGCCGCTGCCGCTGCCGGGCGAGGTGCGGCGCTACGCCGCCGAGAGCCTGGTCGCCAGCAAGTTCGACCTGCGCACCGGCATCGAGGTGAGCAAGAACGGCGTGCCGCAGGTGGGCGTGCTGGGCCGCTGCACCTACATCGCCCGCGAGCACGACCCGCTGCTGGCCGGCTGCATCGAGGCGCTGGCGCAGTTCGCCTTCTACAGCGGGATCGGCGCGGGCACCGCGCGCGGGCTGGGCCAGGCCCGCGCCATCGCCAGCGGCGACCGCGCGCCGGCCCCTGGCCGCGCGCGGCCCGCCGTCGCGTAGCGCACCGATGCCCGCCCAGACGGCCGGCGCTGGCTGAACTACCCCGCAATTGGCCGTACCTTACCAACTGATATAGCAAAGCCAGTCATTTGACAGCGCGCGTTTAGCTCGCCCTGACGCGGCAAACGCGCAGCGCGTGTGACGCGAGGCC # Right flank : GCGAGATCCCTCAATGGTCCAACCGGTCAGATACCCGCTCAGCAGCACCCAGCGCCCCTCCGGGGGAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAGCAGCACCCAGCGCCCCTCCGGGGGACGGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 11298-12267 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWN010000038.1 Oscillochloris sp. ZM17-4 Scaffold_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 11298 37 100.0 35 ..................................... GACTGTAGCGGGCTGATCTACTACTCGTGGCTCCA 11370 37 100.0 35 ..................................... ATCCTAATCCTCGTGCTCAATGACTGCGACCAGAC 11442 37 100.0 34 ..................................... TCGATCCAGCTGACGAGCGCCGCCTCCATCGAGG 11513 37 100.0 34 ..................................... ACGGCGTCAACGTTGGGCAGCAGCGCAGGCGCGA 11584 37 100.0 36 ..................................... AGCAGGATGTCATTATATGTCCGCGGAACTGAGGCG 11657 37 100.0 34 ..................................... GTGCCAGGGACGCGCAGCACCCGCGCAAGATCCT 11728 37 100.0 35 ..................................... GCGACGCGGGCCGCGCGGGCGAGCTGACGGGGCTG 11800 37 100.0 34 ..................................... TCAGCAGTGAGCATACGAGACTCCTTGGTAGTGA 11871 37 100.0 34 ..................................... CTCACGCGCCCAGGCCAGCGCTGGCGGCGCGGCC 11942 37 100.0 35 ..................................... AAGGATGATCTACACCACCGCCCCCAGTTCGCCGC 12014 37 100.0 35 ..................................... CCAACCGATGATTGGATTATTGCATTGTTGAGCGA 12086 37 100.0 35 ..................................... ACGGAAGTCCATATACAGCAAAAGACCCAACATTA 12158 37 100.0 36 ..................................... GTGTGGTGGGAAGACTACATCAAGCCGGCTCTTGGC 12231 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 14 37 100.0 36 GTCGCGCCCGGCTTCAACGCCGGGCGAGGGTTGAAAC # Left flank : CGACCGAGGGGCGGCGGCGTCTCCGGCGAGTTGCCAAGGTCTGTGAGAAATATGGACAGCGCGTCCAGAACTCCGTCTTCGAGTGCGTGGTCAACAGCGCCCAGCTGGCCAGCTTAACGCACGAGCTCAGCCAGGAGATCGACACGGCGCTCGACAGCCTGCGGATCTACCGCCTCCAGGAGCCGCGCTCGCGCTACGTCCAGTCGCTCGGGCGGAGTCTTGTGCATGATCAGCGCGAGCCACTGATCATCTGAGGCCGAGCCAAGCGAAAGGGGGCACTATATCTAGTAGGCGGCAAACGCGGACCTGGAGTGATACGAGAATGCCGGGAGGTTCGCGCAGTCGTAGCCTCCTTTTGGGCTGGATGAGGGTCGAGACAAGGTGCATGGATGCTACAATGATCAGCAAGCAGGTATATAGGCAGATCGTTGGACGGCTTGGAGGGGCCGGCAGGCTGCCTAAAACAGGCCTCAGAAGCCGCTGATCGGCTATCTTGGGCC # Right flank : CATCGCCGGCGCGCTGGCAATCGCAGTGCTGGCCGTCGCGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAACCTCAGCATATAATCAATACCGTTTAGGACGGCAATCCGGCGACTGGAACGGCTCCATCGCCACGGCACAACATCGTCGCATCAACACACGTAAAAGGAGATCCGTCTCATGGCAATGAGTAACAAGCGCCCGAGCGCAGCCCAGCTCGACGCCGACCGCGCGATTGTGGTGGCCCTCCAGGACCTCCCCGGCTACGTGCCGACCAACCCGGCCTACAGCGTAGAGGCGCTCCGCGAGCGGGTGTCCTTCCTGAACTTGAGCGAGGAGGCCGAGATCCGGGCCAAGCGGGCCTACGAGGTGGCCCGCGAGCAGTCCATCGACGCCGCCAAGGGCGTGCATAGTCTGGTGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCGGCTTCAACGCCGGGCGAGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCGGCTTCCATGCCGGGCGAGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.50,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 166323-165423 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWN010000004.1 Oscillochloris sp. ZM17-4 Scaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================= ================== 166322 37 100.0 39 ..................................... GTTGAAGTCGAGTTCCTCGATACGCACGCGGTATACGAC 166246 37 100.0 41 ..................................... CTATACCGACTGCGCCCGGTGTATCTCTAAGGACGCTTTCC 166168 37 100.0 39 ..................................... GCTATGCTATGCAGGCGCGCTGTGCATACATACAGTTCC 166092 37 100.0 41 ..................................... TGCATACAGTCCTCCTTGTGTGTCGCCGCCTCAACCCTACC 166014 37 100.0 65 ..................................... CCTGGACGCTGTGTCCAGGCGTGGGCCACTACAGGAGTTTGTCGTATGATTCTCCGACTGAACGC 165912 37 100.0 38 ..................................... GGACTCGCCGCGCAGGGCCGAGAGCTGGGAGACGTAGC 165837 37 100.0 37 ..................................... AAAGTCCACGAGGTATTCTTTACCACCACATCGCCAG 165763 37 100.0 42 ..................................... CATCCCTAATCGATCCAGCGGAAGCCACCGTTATCGCCCTTG 165684 37 100.0 35 ..................................... ACTACCCGCAGCCTTATCTGGTGCCCTCACTAGCG 165612 37 100.0 40 ..................................... GAAACGTAGCGAGTGCAATACAGTCGCCCACAGGTACCTG 165535 37 100.0 39 ..................................... GGTGTTCAGGTTGCTGCTGCTCATGGTAGGGTCTCCTTG 165459 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================================= ================== 12 37 100.0 42 ATCCCAAAGACCAAAATCCCCGCCAGGGGATTACTAC # Left flank : GGCCTGGCACCTGACACCTGACACGTGCCACCTGTCCCCTCTCAAAAGGAGCGCCTATGCTCTACCTGATCAGCTACGACATCAGCGAGAACAAGCGGCGGACAAAGCTGGCCAAGCTGCTTGAGGGCTTTGGCCAGCGTGTGCTTGAGAGCGTCTTCGAGTGCGACCTGGAGCCACAGGCATACCGGACACTCCGGCGGCGGATTGATCGGCGGCTGCGGCCAGCGGAAGGGGATCGGCTACGGGTCTACCGGCTCTGCTCCAGCTGCGTGGCCCAGGTCGAAGTGATCGGCGATGGGCCGCCGGTCGAGCGCAGCGTTGACGTGTACATCGTTTAAGGGTATATTTGAGCGAAATGCCGCGCAAGCGCATTGGAATGCGCCAAAGCCTGTCAGATACGCCCGCACAACACGCGGATGAGGCCGAAAATAGGCTAAATCGGCAGGCACCGCGCAAAACGTCTCCGCGATGGCTTTCTGACGCCATGCGCGGGGGGCACT # Right flank : CCTCATCTTCCATCGCCTCGATCTCGTCGCCTATTCGTTTTATCCCAAAGACATGGTTTCAGAAGCACTTGACAGTTTGGCGTCACGCGGCGTGCGCTAACCGCAGCGGTGAAGGCATAACCGCCTCCACCGGAGGATAGCCCAGCGCCACCAACCAGTCGGTTGGGGCATCGGTCATGCCACTCAGGTGGAGAGGACTCTGCCCTTTATGGATGCCACGGGGAAAGACCCGATGATTATGCCAGACGGCCAGCAGCGCCAACATCCCCGTCGTCAAGGTGCGCCGCACGGCCAGATGCGGGCGCAGAATGGAGTGCCAGCGTTCCACCGCGCTGCTGACCCGCACGGCGTCCGCCCACGTCGCCAGTAGCACGCGGGCGGCGTCGCGCCAGTCGGCGGGGATGGCCGCCAGGATGTCGTCCCGCGTCCAGGCCAGTGCCTCCCGGCGCAGCCACGCCCACCCCAGCAGTGCCTGCCGTGCGGGGGCCAGCACGCCCGCC # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCAAAGACCAAAATCCCCGCCAGGGGATTACTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.10,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 2 168505-167945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWN010000004.1 Oscillochloris sp. ZM17-4 Scaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 168504 37 100.0 37 ..................................... GCCGCGAGCGCGCGATCCCCGATGGGCGTGGTTGCGC 168430 37 100.0 37 ..................................... AAACCTTCCTTCCGTATTGTCAGAGAACACTGATAGA 168356 37 100.0 35 ..................................... AAAAGACCCACCGGTCAGGTTGCCGTCGCAGATGA 168284 37 100.0 38 ..................................... ACCACGTACGCCTTGTCAGGCGCACCGAGCGCAATCGT 168209 37 100.0 35 ..................................... TCAGGCCACTGCACCATGTCCCATCCGTTAGCCGA 168137 37 86.5 32 ...A.AT.....AA....................... GCGATCTCCTTGACGGTGGCGTTGTTGAGGAT AGAAA [168123] 168063 37 86.5 40 ....AAT.....AA....................... ACATCGCCGAACTTCCACACCCAATCCAGCACGAAGTCTA AGAAA [168049] 167981 37 91.9 0 ...............................G...GT | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 95.6 36 CTTCGCACCCCCCGAATCCCCGCCAGGGGATTACTAC # Left flank : CAGTGATGCTAGTTCACCACCAGCTCCCCAGCCATGCCGCCCGCATAGTGGGCGGGGAAGGTGCAGAGGAAGATGTAGGTGCCCGGCTTCGTCGGGGCAGTGAATGTCATCGTCCCCGTCTCGCCAGGGTTGATGATCGGCATCGCCGCCAGCAGCCCGGGCGTGTCGGCCGGGGGCACCGCGCCCGCCGCATTGCGCGCCTTGGCCATCGCTGTTGCCGCAGCCTCATCGATCGTCTGGGCGACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCCCGACCGATGACTGGCTCGACTGCCACCAGCGTATGATTGCACGGCGACCCAGACCAGATCTGCGATCCCGCGCAGCGAAGCGGGTCATCGGCCATCGCCGTCGCGCCCGTCAGCAAGCGCCAAAACGCTCCGTCGCGGATGCGACCCT # Right flank : TGTGTGCCGCATGGTGGCGTATTGTGCAAATACCCTATTCAACGCTCATGCCAACTCTCTACGTGATCGAGCAAGGTGCCGAGATCGGCTGTGACGGCGAGCGACTGGAGGTGCGCCGCGCCGGTGAGGTTCTCGCCGACGTGCCTCTGGTGAAGATCACCGACATCATCGTCTTCGGCAATGTCGGCCTGACCACCCCCGCGATCAAGCGCCTGCTCGACCGGGGCATCGACGTGACCTTTATGACTATCGAGGGGCGCTATCACGGGCGGCTCGTCGGCGAAGTGACCGCCCACGTGGCCCTGCGCCAGGCCCAGTACGCCCGCGCCGCCGACCCGGCATGGGCGCTCCGCCAGGCCCAGGCGATCGTCGAGGGGAAGCTGCGCAACCAGCGCGCCCTGCTCCAGCGCTTCGCCCGCAACCGCGCCGACCCGCCCCCCGAGGCGGGCGCGGCCGCCGAGGCGATGGGCGACTACCTGCCCCGCGTCGGGCGCACCACC # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCGCACCCCCCGAATCCCCGCCAGGGGATTACTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 73-5188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWN010000058.1 Oscillochloris sp. ZM17-4 Scaffold_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 73 37 100.0 38 ..................................... GAGATCCCCTGAACTGTGAGGGCTTTCACCCATTGGGC 148 37 100.0 40 ..................................... CGAAACTGCGCGCAAACTAAAGGAAGCGCCGATATTCATT 225 37 100.0 38 ..................................... GGCGTGAATATGTCCAGCGTCTCCAGCACCGCGTAGAT 300 37 100.0 39 ..................................... TTGACAGTCTACCCGCGTTACAACCAAAGGATGAACTTG 376 37 100.0 38 ..................................... TCACGCCTCGTACCGGTCGAAGATGGCGCATATCTCGG 451 37 100.0 39 ..................................... CGAGAGTTCGGACATCGCACCATCCAAAGAATCACGACG 527 37 100.0 40 ..................................... CCGAAAGACATGTCGTTGGCGAAGATGCGCCCCTTGTTCC 604 37 100.0 40 ..................................... GGCAGAGGTGAGGATGAGGCCGAGTGCCGGCATGGATGCG 681 37 100.0 41 ..................................... GCGTGAACAGGTCACGCGCAAAGCCCGGCTCGACATCCTGA 759 37 100.0 40 ..................................... GATGATGAAGTCGTTGTCGCCGGAGTACCTGATGTTCTCT 836 37 100.0 37 ..................................... CTAGAACGTGGATCGAATCGAGGGCGGGGTGTAGTAG 910 37 100.0 41 ..................................... CCACCCGGTGCTCGGCCTGCTCCAGCCGGCGCTGTGCATCC 988 37 100.0 44 ..................................... TCATTTGCGCCTCCCCTGGTCAAGCGCGATAAGCAGCAGGTTCA 1069 37 100.0 41 ..................................... CCCGCGCCGCCTACCGCGAACGGGCGCGGCTGATGCTCAAG 1147 37 100.0 39 ..................................... GTCAGTTCCTTCAGCGTGGCCTGCCGCTCCATATATTCG 1223 37 100.0 42 ..................................... ATGTCGATCTCGCCAGCCCTGGGAGCGCCCCGCTCGTACCAG 1302 37 100.0 40 ..................................... GTTGAGGTTACGCCATGACAGATAACATGTGGTATGTTCC 1379 37 100.0 37 ..................................... CATCATACCGGGCAGGAGAAGCAGGGCGGCCACGAGG 1453 37 100.0 43 ..................................... TCATCTGTAATCTGATGCGCAACAATAACCGCAGTGTCAATGT 1533 37 100.0 41 ..................................... TGTTATCCGCCGAGACGGCGGCCTTGTTGGGCCAGAGCAGC 1611 37 100.0 39 ..................................... ACATACGTATCGAGGTTCGTTGCACTCAACTCCAAGCGA 1687 37 100.0 42 ..................................... AGTCAGCTCTGTTGTGTCCATCGTCACCGCCTATGCAAAAGG 1766 37 100.0 39 ..................................... CCAGGGCGTCGAGCTTCTCGGCCAGCAGCTTGCTGAAGG 1842 37 100.0 38 ..................................... AAGAGCTCATCCGCCTCGGCCTGGGCGTCGGCGATCTC 1917 37 100.0 38 ..................................... GAAGAATACCGCGTTGCGACCGCTCAAGAACGCCAGCC 1992 37 100.0 39 ..................................... CCAGGAGCACGGCGCGCACCGTGCCGCTTGCGTCGCTGT 2068 37 100.0 38 ..................................... CGTAGTAGGTCATTGTCGTGTCGCTGTCGTCACTCGTC 2143 37 100.0 38 ..................................... TTGACATGCAGTACGCCAGCGCTGTCAGCCTCTACCTG 2218 37 100.0 39 ..................................... TCGGTGACCATCTTGCCGGGGGCACCAGCGGCGGTGACA 2294 37 100.0 41 ..................................... GGATGCCGCAGCCGAGTCAATCCGAGCATGGGTGGTAATTT 2372 37 100.0 35 ..................................... GTTGCTTGTGCGGCATTGGGGGTATCCTCTTCCTG 2444 37 97.3 40 ..........................A.......... CCAGGAACGACATCCTTGTTCTGCTCTGTGAGCAGGCGAA 2521 37 100.0 41 ..................................... GTTTCTGAGGGCCGTTGAGGCGTGCTAGGCTATGGTTACTT 2599 37 100.0 38 ..................................... CCTGGAGCAGGGCGGGGACGCAAGGCGGGCGCTTGAGG 2674 37 100.0 37 ..................................... CTCCCAAGACGTAGCGGCAAGGGCGGCGTCCCTCGCC 2748 37 100.0 40 ..................................... CCCACACCGCCGACGCCCGCCAACACTCCCGCATATCTCG 2825 37 100.0 42 ..................................... CTTCGCCTCCTCGACTCGAATGGGCTCGCGCCTCATCACCAT 2904 37 100.0 40 ..................................... GGCCGCTCGCGGTCGTAACCCAGACTCCTATCGCGCTTAC 2981 37 100.0 41 ..................................... CCAGCTCGCCCATGCCGCTGCGCTGCGTGACCTCGAAGACG 3059 37 100.0 49 ..................................... TTACCGACCGCTTGCACAGGATACCCAGGTAGACCAGCAGGCACTCCCT 3145 37 100.0 44 ..................................... CCCTTCGGGTCGGGTTGGGGTTTCATCGTAGGTGCTCCTATTGC 3226 37 100.0 38 ..................................... TGCTCCCCCATCTCGACCTTGACCCCGTAGACGCTGAT 3301 37 100.0 39 ..................................... AGTGATTAGCTCTTGCCGCCACTGCGCACATACACCTGG 3377 37 100.0 40 ..................................... CAGGCGCACCAAGGTCCACCTCGCTGGCGCGATCGAGGAT 3454 37 100.0 41 ..................................... CATGGTCGGGCCGACTGTCGCCATAGCCGCGCATCAGCAGG 3532 37 100.0 41 ..................................... CCTCGTCAGCGACCACCTTGATATTCGACGCGCGCCCTAAT 3610 37 100.0 40 ..................................... TCGAAGTGCTGCGCGAGCGGGCGCAGATCGATGGGCTGAT 3687 37 100.0 46 ..................................... ACAGCTTGCCCGCCAGGCCGGGCTCCCAGCGATCCTTGCCGATCTG 3770 37 100.0 40 ..................................... AGGAGTCTACGCCATGATTTACGGTGCGGTGAGTGCTAAA 3847 37 100.0 36 ..................................... GGCGGCCGAGGCGGCGCTGCCCGACCCCGAGGCGGA 3920 37 100.0 39 ..................................... CCACATGACAGCCTATCTGCTGCGCAAAAGACGACTTAC 3996 37 100.0 39 ..................................... CCACGATGAACCAACTGATCAGGCGTTCGGCGGGTAAGG 4072 37 100.0 35 ..................................... CCAGCAGGACACTGCGCTGGTGCGAGTAGTCTGCC 4144 37 100.0 42 ..................................... CTTCGGGGCCTTGGCGGCCTTGGCGGCGTCATCTGCGATGGG 4223 37 100.0 38 ..................................... GATCGTAGCCCTCATCCTCCATCGCCTCGATCTCGTCT 4298 37 100.0 37 ..................................... CCGAGGACATAGGCGCTGTGGTAGTCCAGCGTGCATA 4372 37 100.0 40 ..................................... CCAAGAATGTACTCGGCGCTGTCGTTGCCCGGCAGATCGA 4449 37 100.0 41 ..................................... GTCAGAAAGTTGAACAGCTCGACGCACTGCACATGCGTCAA 4527 37 100.0 39 ..................................... CTATGGCAGCAGCACCTGTGGGCGCTGCGTTCAACTTAG 4603 37 100.0 41 ..................................... CCGCAAGCATGTTCGCATAGAGCGCGGTGTGGCACACCACC 4681 37 100.0 40 ..................................... ACCACAGGATCGCCGGGCCGCCGCGTCGCCGTCACAATGG 4758 37 100.0 37 ..................................... GCGAGACGGAACCGCTCGCGCCAGTCGGGGTCGGTCA 4832 37 100.0 48 ..................................... GTTATGCTGTCAATGCCCCAACTTCTTACAAACACCATACCAATACTG 4917 37 100.0 40 ..................................... GGCATCGTCTAGGGTGCCCTGAAACGACACGCTACACGCC 4994 37 97.3 44 ....T................................ GCAGATCAGCCGGGTGGTGCGGGCCACCCAGGCCGATGAGGTGA 5075 37 100.0 40 ..................................... TTGGCGTTGTCGGTGTCCATCTGCTCGGCGTCCGTTGTGG 5152 37 94.6 0 ............TC....................... | ========== ====== ====== ====== ===================================== ================================================= ================== 67 37 99.8 40 ATCCCAAAGACCAAAATCCCCGCCAGGGGATTACTAC # Left flank : AAAGACCAAAATCCCCGCCAGGGGATTACTACGGAAATGTCAGACAGCAACCTGTCTGACGGCATGAACTACA # Right flank : CTGGAATGACTGCGCTAAAGGACACGCCATAGGCTATCGCCTCGGCCCGCCCTCCAGCTCGGCGCGTATCGCCGCATCGCTCACCTCGGCGTAGCCCATCGTCGTCCTGATGTCGCGGTGGCCCAGGCGGCGCTGCACCGTCTCGATCTTGTGGCCCTCCTCCAGCAGCTCGGTGGCCGCCGTGTGGCGGAGCTGGTGGATGGTGTAGCGCGGCTTGCCCTCGGGGTCGATCAGGCCCGCGCCGGCGCAGAGCTTGTTCCAGTGCCACACGACGGTGGTGTAGCGCGTGCGGGTCTTGCGGTTCGAGCAGAACAGCGGGTGCGTCGGCGGCATGTCCGGGCCAAGCGCCTTGAGGTGCCGCCGGAGCAGCCGCACGCTCTTCTCGGTGCTGTTCGGCCCCAGGATGACCACCCGCTCCACGCGGTTCTTCGGGTCGCGCACATGCAGCCCCTCTTGGCCGGGGGCCAGGCTCACATCTGAGACGTTGAGCGCCAGCACCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCAAAGACCAAAATCCCCGCCAGGGGATTACTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 77-479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWN010000096.1 Oscillochloris sp. ZM17-4 Scaffold_96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 77 37 100.0 36 ..................................... TAGAACATTCCCGATGTGTACCTTTTATAGACAGAG 150 37 100.0 38 ..................................... GCGAAGAGCGCCAAGATGGTGGCCGAGGCCCCCAACAT 225 37 100.0 32 ..................................... CTGTGGGGGTAGCGGATGGGTGTGGACCAGTT 294 37 100.0 38 ..................................... CTGTCTCTGTGGGCAGGTGATAACCTGCCCAGGGTCGT 369 37 100.0 37 ..................................... ATCCTGTTCACCAGCGACCGCTCATCCGGGGCGGCCG 443 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 100.0 36 GTGACCAACCCCTTCTTTGCGGGGAGGTGGTGCCGAG # Left flank : GCGCACGCCGCGTGACGCCAAACTGTCAAGTGCTTCTGAAACCATGTCTAGGCCGGAAACGCTGCCTGCCACAAGCG # Right flank : GAGGGTCGCGTCTCGCGGGTGTGGGGTCTGGCCCTTCCCAGCGCGCCCCCTGGCACCGCGCCAGCGGCACCGAAAAGTGTAGCGATCTTGCGATCCTGGCCGAATGGGCTCAATATACCACATCTGCCTACCGTTTAGTGGGTCACTGGTTGCCCCTCTGCCGCGCCGCCGGGCGCACCACCAGCAGCCTGCGCCCGCTGCGCTGCGTCTTCACCTCCACCACCTCGACCCGCGCCGGGTGGCCGACCCGGTATCTGCGCAGGTCGGCCACGTCGGCCGAGAGCAGGGCCACGGCCTGCTCGGCGCTGAAGCCCGGCACGGCGATCACCGCCGCGCTGGCGTCGGCCTCGATGATCGTGGCGGTGAAGACCTCGCCCGCCCCGGGGATCTGCGGGGCGGGCTTCTCCGGCCTCGGCGGCCTCTGCTCCTGAGCCTGCCGGCCCGGCGTGCCCTTCGCCGCCAGCTCGGCCGCGCTCAGCGTCGCGCCGACCACCTGGGTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACCAACCCCTTCTTTGCGGGGAGGTGGTGCCGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 42-605 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWN010000094.1 Oscillochloris sp. ZM17-4 Scaffold_94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 42 37 100.0 36 ..................................... TTGCGGTCGCTGGTGAACAGGATTTGGCTCCCGTCG 115 37 100.0 38 ..................................... TTGTGGCCCAGTTACCCCAGGAGGGGGTCCAACCGTCG 190 37 100.0 40 ..................................... GGAGCAACACCCCTCACCAGGTCCTCGGGCAAGCCCTTGA 267 37 100.0 38 ..................................... CGGAGGGGTTGCTGGAGGCGGAGTATCTTTAGCTTCAG 342 37 100.0 39 ..................................... ACGCTTCCCCTCCACCCGATGCGGGGGGGTGAGCGTGAT 418 37 100.0 39 ..................................... CCTCTCCACCTTGCGGTTTCGAGTGGCTGTGGACAGTAT 494 37 100.0 38 ..................................... CCTCATAGCGCAGGCCAGAGGCCTTGCGCTTCAGCCAG 569 37 78.4 0 ...........................AGAC..TCGG | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 97.3 38 CTCCGCATCACCGACCCGCTTTGAAGGGTTTTGAAAC # Left flank : CTCAACATCGACGGTAGCGGGGAGGTCACCTTGACCACCCTC # Right flank : GCTAATTACTGGCGGATCGTCCCTATCGGCGTGACGCCAGCGTGGCGAAAAACGGTGCCACGGCCTAACGCGGCGCAGCATGAGCGGCGATCCGGGAGCGCGCGGGGCGACGCGTGGCGAATCGGGCGATTCGGCCTGGTGCCGCGCACGCCGCGACCGGCCCACACGTGGGGGCCAGCCGCAGATCTGGCACGATGCGGGTGATCATTGTCGGCGGCCGGGGGGCCAGGCCGCGCCGGACGCGGCTCAGCCAGCTGAGCAGGTTGCGCACGGCGCAGGCCTGATAGAGCTGACACTGCGCCGCCGCCGTGCCGATCCGCCGCGCCCGCCGGCAGCCCTGCCACTGGACCAGCCAGGCCACCACCGGCTCGACCCGCCAGCGCCCCCAGAGCAGCGCCCGGCCTTCGGGCGTGGCGTTGAAGGCGGCCGCATCGCGCAGAAACGGGTGGTAGGTGCTGATGAAGACACTGCGGTGGCCAGTGGGATTGGCGTCGGGGTCG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCGCATCACCGACCCGCTTTGAAGGGTTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 2578-2999 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWN010000094.1 Oscillochloris sp. ZM17-4 Scaffold_94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2578 37 78.4 38 GAAATA..T........C................... GACCTGATAGCTGTGGGTCTCAGCGCGCGTGACACTCG G,AG,T [2582,2588,2592] 2657 37 100.0 39 ..................................... GCAATATTCAGCGGCGTGTCGATCTTGTTGTTCCACCGA 2733 37 100.0 38 ..................................... GAACCACCACAGAGTCCCGACGACAACGATCAGGACCA 2808 37 100.0 38 ..................................... TGCAACCGGACAGGGCGGCCAGCAGCAGGGGAGCGAGC 2883 37 100.0 38 ..................................... AAACGTCCCCGTTTCCTGGCCGGGGGGAGCGAGGATGC 2958 37 91.9 0 ............................G.GC..... | AGG,CT [2982,2994] ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 95.0 38 CTCCGCATCACCGACCCGCTTTGAAGGGTTTTGAAAC # Left flank : CATGGAAGTCCGCCAGGGTGCTATGGTCGGGGCCACGCTGCATGAGCGGCAGGCCGACAAACCAGCGCACGAGGAAGTCGGTGCTGAGCAGCTGCTCCAGCGCGCGCTCGGAGCAGGAGCCGGCCCAGGAGCGGACGATCTCCATGCGGACCAGCTGCGCGATCGTGTAGTCGGGTGGCTTGCCCGGCGTGCCCTCCGGGTGGTGGAATCCCGCGCAGGCCGCCACGGCGTCGGCCGGGTCATACCAGGCGTGAAGCGCGACCAGCGGGTGGTCGGCGCAGCGCTGGAACATGGGCCGCATGACCCGCCCGGCGACCCAGGCCAGGATCGGCTCCAGATGCTCCCCGAGCACCCACAGGGCCAGCGGCGGAAGATCCGGCAGATCGGGCGTGTCGGCGTAGGGAAGTGGTGGTACAATTGCCATATTGAGCCGTGTTTTGTGATCTGATAAGGTTGTTGTACCCGTATCATGCCACAGAACACGGTTCGATCATCTGTGC # Right flank : CATAAGGTGAGCGAGTCCGGGGCGCGCTAAACATAAGGCGCGGGATCGGGCCGGCGGGGGCGGGATCGGCGAGCGGGGGGTGATCATCGCGGGGCAGATCGGGGCGGCGGGCGGCGTAGGCCCAGGCACGGGGAAGGTCACACGTTCCGCCACCGGGCCGAGCGGCACTGCGACCGATACGGGGCGCAGGGATTCATGCCCCATGCGCCGTAGGCGAATCGGCCCGGGCTGCGGTGCCCCGGAGATCCCGTAGCGACACCCTGCCCTCAGAGGCTCCCAGATGTGGTGCTACCATGCGTATCGCGGGGCACTCGTCGGTGCCTATGGGCCGCACGCTGGTGACACCCACGCCCCTGGCGCGGCCCCGCGCCTCCGTGCTCGGCGCGATAGCCGCGCCGCCGCCGCCCTGTGCCAGGAGAATAGACGTGATGTCGAAGAAGCCGACCGTCCGCGAGCTGCGTAGCTACCTCGCCGCCAGACCGGTCGATGAGCTGGTCGAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCGCATCACCGACCCGCTTTGAAGGGTTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 67-1220 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWN010000143.1 Oscillochloris sp. ZM17-4 Scaffold_143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 67 37 100.0 40 ..................................... ATTGATTCGGCCAGATGGTGGCCCAACAACGGGCCAGACT 144 37 100.0 40 ..................................... GTTCTGACGAGGACAACGTCAGCTGCGCTCAGTGTTTCAA 221 37 100.0 37 ..................................... TTTTCTTCAAATGCGTGCGCGCTTTGAGAGGCGATAT 295 37 100.0 37 ..................................... ATTCTAGTATTTGGGTTTATTGCAACAAAGTCTAAGA 369 37 100.0 38 ..................................... CAACCGCGCAGAGCGAGCTTAAGGCCTGCCTGGCCGAG 444 37 100.0 38 ..................................... ACGGTTTACTTGGTTACTTTGATACATTTCAGTATGAA 519 37 100.0 37 ..................................... GCCACGGTCCACATTAATGGACCTGAGCGACTCTCTG 593 37 100.0 35 ..................................... TTAGTAATGATGGCAGTTCACAAGAAAGTGCTCGA 665 37 100.0 37 ..................................... TGCTAAACAAGGGGGGCGGCGCCGCCGCCCCCAACAC 739 37 100.0 37 ..................................... TCGCTTTTGGCGCAAAGCGTCAGAAGCGTCCCATCCA 813 37 100.0 38 ..................................... CGCTTTACTGCGTGCAATGAGCATTTTACGTAAATCTT 888 37 100.0 37 ..................................... TTGATGCTAATTTTAACATGTACTTCGCCCGTATGTA 962 37 100.0 38 ..................................... CTGCCGGTTCTGACCGGCGCTCTGACCTTTGCCGCACT 1037 37 100.0 35 ..................................... GGCTCGAGAAGGAGCGCTTACGTGAGGAGCTTGAG 1109 37 100.0 38 ..................................... GTCTACTACCTCGTCGCCATCCAGACCGGCTGGCCTTT 1184 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 16 37 100.0 38 GTTTCAAAACCCTTCAAAGCGGGTCGGTGATGCGGAG # Left flank : CTCCTTCAAAGCGGGTCGGTGATGCGGAGTCGGCCAAACCGATGTTATGAGCAATTCGAGAACGGAG # Right flank : GAGGGTCGCATCCGAGGAGGTCAAGGTCTGGCGCATCATGGTGCGGTGCCGCGTGCCCAGCGGCCTCCCCCTTTCCCTGGTATAACCTTGCATTTTGGGTGATCTCCAGGTATGATCAGGCCACAGTGCCATTCTAGCAGGTCAGCAGTGGGAGGTCAAGCACATGCAACGATGGGGCCAGTATCTTGCCGAGGTGCCGCAGACCCTGCTGCGCCTGATCGCGTCGCATCAGCGGGTGAGCATGCCGCGCCAGTGCCCGCCTGCCGAGCGGCTGTCCCGCCTGCGGGCGGCGATCTGCCGCTCCGCCGCCGCCCGCGAGGCGTTCTTCGGCCTGCACGCCGAGGAGCGCGCCGCCGTGCAGGCGCTGCTCGTCGCGCCGCCCGGCGCCGCCCGCGCCCAGCTCATCGCCGACCTTGGCCCGATCCGGCCGCTCGCCGCCCTGCGTGCCGACCGCGCCCCGCAGTCGCTGGCCGAGCGGCTGCTGCTGATGGGCTGGCTGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAAACCCTTCAAAGCGGGTCGGTGATGCGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 56145-55670 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWN010000019.1 Oscillochloris sp. ZM17-4 Scaffold_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 56144 37 100.0 36 ..................................... GTCGCTGGACGCTCTGGACTAAACCAGCTGTGTCGC 56071 37 100.0 36 ..................................... TGCCCACGTCGCTGGTGCAGCTGGCGACGAAGGCGA 55998 37 100.0 36 ..................................... ACAAAATGGGCAAGGTAGCGGTTTAATGCGATGCCT 55925 37 100.0 36 ..................................... CCACCGGCGAGCAATGGAACTTGCCAGCGTGGCCGA 55852 37 100.0 37 ..................................... CATACAGGTCGGCGCCGCAGTTCTGGCAGGCGCTAAT 55778 37 100.0 35 ..................................... TGATCAGCCTGCGCAGCAGCTGGCGCGCTGTCTGA 55706 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 100.0 36 GTTGCAGTGGTATCAGCGCGCCAGAGGGCAGTGGAAG # Left flank : GCCCGCCACAATACCGCAATCGTAGTGGCGCAGGAGACGCTGCGAAGGCTCAAGCGGCGCGCCGAGCAGCAGGAAGAGGCCGAGGCAGATGAATAGAACATTCTGGAACCTGTGCGCTTCCGCACAGCACACATAGCCACGAGTATCTCGTCTCTATGTGTGTACCGCGAGCCCCTGGTCGTCGGCCAGGCACTCCCAAAGAGTGCGCGAGGAAGTCTAAGTCGTTGGTCGGCGGTAATAGTTGCATGACCTACCCCAACCAGCTATGATGGAGTGGCCTACCTTCGGGCAGGCCATCTCTACTTCCGGAGGTGCGCGCCCCAGCATCGACCATCGATCCTGGAGCCGAAAAGATGCCCAACGCGCTTCCGTCGGCTGCGCGGCGTGCTCGCTGAGACCGTTTTCGCAACTCGGGCCTGTTTTTGAGCAAAAAACGAGTTGCGAAAAAATTGCCAGGAAACTCCGTATTGCATGGCTTCCTAATGCCATGTAGATCCGGG # Right flank : CATCGCCGGTATAAGAGGGAACTACTGCATTGTGATGCGATTAGTCCTGCTTTTAGAGGAAGTGTAAGCGGTTTCTGATGGATGAATTTGGATTTCTGCCGGAACTTGCCAGTGTTGCTCTGCTACTGGCTCGCCCGACGGCCAAAAACACAAAGTGTCACTTTGCGATTATGCGCTCCTCAGGCTTTTTTAAGAGCCGACCCAAAGGCGCTGATCTTGTCGCTTTTGTGGCAATTATCGAAAACCGTGAGATTTCCTGATAATGCCTTACATCGCCGTTTCTTGGCATTGGGAAGCTCTACAATGATCACTATACTAGTTCCTGACAATCGTTATACTAGTTCCTGACATTGGGCAGGGCGCGGCACCCGTGAAGCGGGTGCCGCGCCTCTGTCTGTCGAGCAGGTCCTGCTGCTCAAGTCGCTCTCCGGCGGCGAGTGGGCAGGCGGGCGCGGCCAGAGAAGGGCTGCTGCGGGCGATCGTCCGCTTCCATGCTGCCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTGGTATCAGCGCGCCAGAGGGCAGTGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 286921-286522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWN010000002.1 Oscillochloris sp. ZM17-4 Scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 286920 37 100.0 36 ..................................... ACAACGTGTATGAGAACATCTACGCGGCGCTGACAC 286847 37 100.0 35 ..................................... TGCGCCCTGCGCGCGTACCCGGTGCCGGTCGGGGC 286775 37 100.0 36 ..................................... ACTTCCAGGGCGGCTCCCTGGCCCTCGACGCGCTGA 286702 37 100.0 36 ..................................... TCTTTCCATGCGGTCGCCACCACGACCTGGTTATCT 286629 37 100.0 34 ..................................... TGGCTCGTACACGGTCACCGGGGCGTCCTCGGTG 286558 37 94.6 0 ...................G..............C.. | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 99.1 36 GTTGCAGTGGTCAACATTGAGCTGTGGCAAGTGGAAG # Left flank : ACCGGCGGCTCGTGTGTATGGCGTGCGGGTTGGCATGGAGATCCAGTGAGCCCTGGTTTATCTGCGATGGGTGTCATCATCAACGGGCGCCAGCGCATAACCAGGCGACGGTGGTGGCGCGGCTTACCCTGAGACGATTGGTGCAATTCCACGAGGCTGCGATGAAGCGCGATGCCGAACGTAAGGTTAAGAGGGAGGGTTCACGAACGACAAATATCTCTGGTAGCTGAGTAGCACGTACAAGACGTAATGGCGGATCTGGTTGGGCGAGCAGGGAAAAGGTTGGGGAGAAAACCTGCGAGTACTTCCCCGCAGGGTGCGACACCATTGTACAGGGTTGGTGAGCGCATATACGCCACAAGGCCCATGCCATCGGCGGGCGGCGCGGTGTAGGCCACAATTTTCGCAACTCCTTAGGTTGATTTTGAGCAAAACCGAGTTGCGAGAAAAATGTGCGATCTTGGCTATTTTCATGGCTTTCCAAAGCCATGAAATTCAGG # Right flank : AGCAGTGTGATCATGTGCGGAAAGGTGGTGATAACGCAAAGAATGCCATTGCTTCCCTACGAATACTTCCCCGCAGGGTGCGACACCATCGTACAGGGTTGGTGAGCGTATATACGCCACAAGTCCCATGCTATTTGCGGGCGGCGCGGTGTAGGCCATAACTTCGCAACGATAGGCCTGTTTTTGAGCAGGAATCGAGTTGCGAGGAAAATATGCAGTTCTAGCTATGTTCATGGCTTTAGGAAAGCCATGAAATTCAGTATTGCAGTGGTCAACATTCGGCTGTGGCAAGTGGAAGTTGCAGACGCCGATATAGTTCAGCAGATCCTGCTCGGTTGCAGTGGTCAACAGTAGGCTGTGGCAAGGTCACGCATTGGCGAGTACGTAGATGCGAGCGGAGACTCTGTTGATCTGATCACCCGACTCGAGTAAAGAGCGACCATCCAGATAGGCAATGCACAGCCCCACCGGCACGGTGGGGCTATTTTTGTGCCTCTCAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTGGTCAACATTGAGCTGTGGCAAGTGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.70,-2.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 312460-311607 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWN010000002.1 Oscillochloris sp. ZM17-4 Scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 312459 37 94.6 37 ...GA................................ TCGACGGCGTTTGCGCTCAGGCTGCGGAGCGGGAAGC G [312453] 312384 37 100.0 37 ..................................... TCGAGGATCGTTTCGTACTCGCTCCCGTCGTTCACAT 312310 37 100.0 37 ..................................... TACTTTAGAGGGCCGGACTAGTCTTGGAAGCTAGTCG 312236 37 100.0 38 ..................................... TGGATCTCATCGAACAGCAGCAGCGCCGTGTAGAGCTA 312161 37 91.9 38 ..T.......G.T........................ ATCACGGCATAATTTACATACCACTGCGCCGTATACCC 312086 37 94.6 36 T..G................................. CCCTAACCCTCGGCGCATGGCCGGGCCACGGCGGGG 312013 37 94.6 37 ......CT............................. TCCGGCACGATTAACTTGGCCTCTTGCTGCCCAAGGT 311939 37 91.9 37 ......CTT............................ CTGGGGCCTCGAGTGCGACGACCAGCGCCTTGGCCTC 311865 37 91.9 38 ......CTT............................ CCTTGAGAAGAGTACCCTTAGGTCCGAAGTAGTTGCCG 311790 37 100.0 36 ..................................... TTTGCAGCCAAGCTGCACGCTGACTGGTTTTGGTCC 311717 37 100.0 37 ..................................... CCCAACAAAGGCGTGGACGAAGAATTCCTGATGACCC 311643 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 96.4 37 CTCAGCAGCACCCAGCGCCCCTCCGGGGGACGGAGAC # Left flank : CATCGGCCTCCACGCTCGGCTCCCCCTATGGTATCGCGAATAATCGCTTTATGAATATTCTGCCCTTGCCCAATATCAGCAATATCACCGAGGGACCCGCGCCGCTGACCGTCCGCCTGTCTGATAACCTCACCAACGCCATCACCTACACCAATGTCATCACCTATGACATAACCAAGCCGGTGCTAACGAACCCGCTTAGTGTGACGCTGGATATCATCCCGTCTGACCCGCTCGCGACCATCCTGACCGACCTGGAGTTTAGCAACGTTCAGGTTACTGATGCCTATCCCGGCGGCTACTGGGGCGTCTGGGTGGCCAATAGCTTGAGCTCCACCAACCCGCTTACTGACACGGCCCTGCTGTGGTCGCCGGTGAAGGTTGACCAGGCTGGGACGAGCCCGGTGGTGAAGAACTGGAGCCTGGCGACACGCCTGCCTGGGGCGACCACCCTTCTGCCACAAGGCGGAACAAGAACGTTCCACGTCTATGTTCGCTTC # Right flank : CAGTTCGGCGCGGCAAACGATGCTATGCTACATGGGGGACTGATGTGTCTCGTATCATTGAGAGAGGGGGTCTCGGCATGATGCCGCCAACCCGCGGGCTCACCCTCGGCAAGTTCGCCCCGCTCCACCGCGGGCACCAGCTGCTCATCGACACCGCCCTCGCCGAGGTGGACGAGCTGGTGATCATCATCTACGACTGCCCGGAGACCACGCCGATCCCGCTCTCGGTGCGCGCGGCGTGGCTGCGTGACCTCTACCCGCAGGCCAGGGTCGTCGAGGCGTGGGACGGCCCGCTTGAGATCGGCGACACGCCCGATATCCGGCGGATGCACGAGCAGTATGTGATCGCGCGCCTGCGGATCGGCCGGGTCACGCACTTCTACTCCAGCGAGTTCTACGGCGCGCATATGAGCCGGGCCCTCGGCGCTGTCGACCGGCGGGTTGACCCGGCCCGCGCGGCGGTCCCGGTCTCCGGCACGCAGGTGCGCGCCGACCCGTAC # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAGCAGCACCCAGCGCCCCTCCGGGGGACGGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 3 357887-360050 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIEWN010000002.1 Oscillochloris sp. ZM17-4 Scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 357887 37 97.3 37 ...............A..................... AGCTCAACAAATCGCCGGGCAGCTCGCCAGCCGTCAG 357961 37 97.3 37 ...............A..................... GAGGTAGCGCCGCTCACGAGTAGGGTTGTCATGCCGC 358035 37 97.3 37 ...............A..................... ATACGAGGCCAGGGCCAGGGGCGCGACCTCGGGCAGG 358109 37 100.0 36 ..................................... ATCAACTGGCCGGGCTTGAGCGTCCGTAGTAGCCGC 358182 37 100.0 38 ..................................... CTTGACGACGGTCGGACGCTGCAAGCCCGTTTCGGCCT 358257 37 100.0 36 ..................................... ATCAACGGCCAGGGGCGCGCGGCAGGCTATCAGCAG 358330 37 100.0 36 ..................................... ACATCGGTGTCCAGGCCGATGGTGACGTAGCTGGCG 358403 37 100.0 36 ..................................... GCTCGTTGATGTAGCTACGGCTCAAGTTGAACCGCC 358476 37 100.0 36 ..................................... TAGCCGGGACGGCGACCTCGACAGCATGTACACGGT 358549 37 100.0 36 ..................................... TCTGGAAACTGGCACTCTTTATGTGGCTGTCGTTTC 358622 37 100.0 36 ..................................... TCTGGAAACTGGCACTCTTTATGTGGCTGTCGTTTC 358695 37 100.0 38 ..................................... TCGGCTCGGTTGTCTCTGAGTCTACGCTCTCTGCTCGT 358770 37 100.0 35 ..................................... TATGACAGTGTCTCCGTCTCTGTAACTCCTACGGA 358842 37 100.0 36 ..................................... ATCAATGGCTCACGATATCTTAGAGCTTCCCAGCGT 358915 37 100.0 37 ..................................... GAAGCAGTGGCCAGACGCCAATATCGGGATCGCCACT 358989 37 100.0 39 ..................................... TGGGCCAGCGAGACAGCAGCCGGCGCCCGGCTGAATGAG 359065 37 100.0 36 ..................................... TGAAACACCCTGCCCACATCGAGCCAGCCCGGCCCG 359138 37 100.0 35 ..................................... GCTTACGGCTGCATACACTCCGTATCTGTCCAGCC 359210 37 97.3 36 G.................................... ACGGGAAGATGGGGCGATATTGCAAGTTTCGTCGCA 359283 37 100.0 36 ..................................... ATCAAAGCACCAGGAGGAGCATTACCAGATTACGAA 359356 37 100.0 36 ..................................... ACTTACCCTTGCCGCCCTTGTCGTCATCAGAGGGCG 359429 37 100.0 39 ..................................... CTAACACTGATGATACGCAAGGGCAAGAGCGGAGCTGGG 359505 37 100.0 38 ..................................... AGTGTGGCAACCCCAGCAGCTGGCGTAGATATCCCCGC 359580 37 100.0 33 ..................................... TCGATGCTGCAATCGGCACAAAAGGAGATGGAA 359650 37 100.0 36 ..................................... AAGAAATTCACCAACTGGTAGGCCAGCTGGTCTGGC 359723 37 100.0 35 ..................................... CTCGCGCATGATGGCCTCGGCCTCGGGCAGCCGGG 359795 37 100.0 36 ..................................... TCCACCACCGGCCCGCGTTACTACAATCCGCACTCC 359868 37 100.0 35 ..................................... CCACTCCGGCACCGGCAACGAATGTGATTGCCGAG 359940 37 100.0 37 ..................................... ATCGTGGGATCAGGGGTGATCGTGGGATCAGGGGTGA 360014 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 30 37 99.6 36 CTTCAAGGAGCCGATGATCTGCGCGGCAGATTGAAAC # Left flank : AAACTATGCCACCTGCCTCTGAAGATACGACCCTCTACATCGTGGCCTACGACATCCCCGACGACAAGCGGCGCACGAAGGTGCATCGTGCGCTGTGCGGCTACGGGGCCTGGACGCAGTACTCGCTGTTCGAGTGCTGGCTGACGAAGCGGCAGCTGCTGGAGCTGCGGGCGAAGCTGGCCCGGCACCTGATCGCGGAGCGCGACAGCGTGCGCTTCTACCCGCTCTGCGGGAGCTGCCAGGGCAAGGTGATCACCGTGGGCGGGGCGCGGCCGCACGACCCGGTGACGGTCATCCTGTGAGCGGCGGCGGATCGAGCGGCGAAGCATGGGGCGAATCCCTGGGAGTCGCTCGCATGATGCGCTGGGGCTTCCCAATGCGGCGCGACATATGCTATGATAAGAATGTGCTCCATGCTCCGCTTGCTCAGAGGGTGCCTGCGCGGGGCCGCTCGAATCAGGTGTGTTTCATGGCTTCAGGACGCGCCCGCGAGCGGCGGG # Right flank : AGCGACCCGGACCATATCGACCGACGACGAGAGGGGTGCGCTAAACATAAGGTGAGCGAGTCCGGGGCGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAAGGAGCCGATGATCTGCGCGGCAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : NA //