Array 1 2140-71 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSGP01000037.1 Vibrio cholerae strain N2756 NODE_70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2139 28 100.0 32 ............................ TTGGTAGTAAGCCAGCGCCAAAGCACCGGCTG 2079 28 100.0 32 ............................ CCTCATTTATTCATAGCTGCTTTTACACGCTT 2019 28 100.0 32 ............................ CTTATTCTCAAGTTTTGTTTGAACGAATTAAA 1959 28 100.0 32 ............................ ATTAAATGTGCAGATCTGCACAAAATTCCTTT 1899 28 100.0 32 ............................ TTTTGATAGGCTTCTGTGTTGTCTAACCCTAG 1839 28 100.0 32 ............................ TTATAAACATAGTAATCCCGGCTTATCTCGTA 1779 28 100.0 32 ............................ TCATCAAAACTACGTTGAATCAATCGATTCTC 1719 28 100.0 32 ............................ GTTAGGCAGTCCAAAAGTTAAGGAACTGCCAA 1659 28 100.0 32 ............................ ATATTCTTCTTCACCGCAATGAGGACAATACA 1599 28 100.0 32 ............................ CAAATCCCAATGATCGTCAAAGATCTTTAGAT 1539 28 100.0 32 ............................ TTGAGTTAAATTTAAAACGGATTTTAGATTGT 1479 28 100.0 32 ............................ TATTATCTTTTAAAGAAAATGGGATTCGGTTT 1419 28 100.0 32 ............................ TGTCGTTATCTTCGATCCCATTTACCGCTTAC 1359 28 100.0 32 ............................ ACTATTTTGATTGCTTACGTTCCAAGTGTTTT 1299 28 100.0 32 ............................ TGAATGAAGTAAAGGCGTGTATGTCATCTGGA 1239 28 100.0 32 ............................ TTGCTTGATGGTGAAGTAACCGCGATCGATAA 1179 28 100.0 32 ............................ TTTCTGCCAGATTGGATAGCAGGGATAATATG 1119 28 100.0 32 ............................ TTACACCGTACATACGCGAATTAATTTTAGAA 1059 28 100.0 32 ............................ TCAGTCATTACCTGAGGCACTACAACTGGCCG 999 28 100.0 32 ............................ AAGCCAATCGATTTGGCAAACTGACCCAACAA 939 28 100.0 32 ............................ TAAAAATAGAGCAGCAAAAATAAACCAAACAA 879 28 100.0 32 ............................ TTTCACAAAAAGCAAAGCAATATGGAAATCAA 819 28 100.0 32 ............................ ACAAGGGTATCTATTGCCGAGATCGCAAAGTG 759 28 100.0 32 ............................ TATTAACTTTATGAGTCAATGGGGATAATCTG 699 28 100.0 32 ............................ TGAAAGTAATCGTCTAATCGGCTATTTAACAT 639 28 100.0 32 ............................ ATTTAGCCTAGCCGCCGCCTCTGCGGGTGCTT 579 28 100.0 32 ............................ ACAACAGCAAGGCTTATCCACCCGAGAAGCAT 519 28 100.0 32 ............................ TCAAGCAAATCTCGATAAGCTTGATCGCTGAG 459 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 398 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 338 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 278 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 218 28 96.4 32 ...........T................ AAACGATGAGATCTGTAAAAATGGGGTTTTGA 158 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 98 28 89.3 0 ..........AT.............T.. | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTGCTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGGGCGGGATCGAACTTTAACCACTGAAAATAAAAGACTTTATTTTATTGGGAACTTTTCAAGGTAATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //