Array 1 212189-210450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBG010000004.1 Salmonella enterica subsp. enterica serovar Derby strain HA8-WA2 YZU1230_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 212188 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 212127 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 212065 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 212004 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 211943 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 211882 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 211821 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 211760 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 211699 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 211638 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 211577 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 211516 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 211455 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 211394 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 211333 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 211272 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 211211 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 211150 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 211089 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 211028 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 210967 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 210906 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 210845 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 210784 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 210723 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 210662 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 210601 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 210540 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 210479 29 93.1 0 A...........T................ | A [210452] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229650-228829 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBG010000004.1 Salmonella enterica subsp. enterica serovar Derby strain HA8-WA2 YZU1230_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229649 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 229588 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 229527 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 229466 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 229405 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 229344 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 229283 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 229222 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 229161 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 229100 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 229039 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 228978 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 228917 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 228856 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //