Array 1 594238-594019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVV010000001.1 Streptomyces albidoflavus strain LGO-A3 A3_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================= ================== 594237 26 100.0 39 .......................... TTGAACGGACGAGTCCGATCCGGACCTCGGCCCAAAACC 594172 26 100.0 38 .......................... TTGAACCGTCAGGTTCCCCCGGGCCCAAGCCCAAAAGT 594108 26 96.2 38 .......................G.. CTGAACCGTCAGGTTCCCCCGGGCCCAAGCCCAAAGAT 594044 26 96.2 0 ........................C. | ========== ====== ====== ====== ========================== ======================================= ================== 4 26 98.1 39 CAGCCCGGCCGGCGCTTGAGGCCATC # Left flank : CCAGGGCCGCAGGGCATCCAGCGCCGCCGGAGCGGACGGCGTACCCCCGGGCCCCCGCACCAGCCACTCGTTCCACAACGCACCCCCGGGCGCCACCACCGCCTCGAACCGCAACGCGGGCCAGAGCACCACCGGCCACCGCAACGCCTCACACTCCAGATCCCCCACGACCCGCCGCTCCACGGCCTCCGGCACCCCCAGCACCGACCGCAGCAACCCGGCTCCCCGCCGCCCCCTGGGTGACCGCACCATCGCCTGCCACCGCCGGTTCGCCTCCCGCATGGCGCCGGCATCCACCCCCAGCTCCCGCCGCGCCTCCTCCACCATCCCCGCCTGAAAATCCGCCATCCGCCGCAACAACACCAACTGAAACTCAAGCGGCCCGAACGAACTGGTCCCACCGACAGCAGCGCACATCCCCCCATTGTCCGCAGCCCCCACCCCACCGCGAAAAACAGCGGGCACGACCGCCGAGAGGCAACTGGCCGACCGCCGAAAAA # Right flank : CCACCGCACCCCCCCGCCGGGGAGGGAAGACTCACTCCCCGGCCATCCTCCGCAACATCCCCCGGAGGGACTCCCGCTCCTCCCGGGAAAACCCGGCAAGCGGCTCCCGGGCAAAATCAAGGGAGTCCCGCAGCACCCGCGCGACCTCACGCCCCTCCGCGGTCAGAGCGGCCACCTTGATCCGCCGGTCCCCGGGATCGGCCTGCCGCTCGACCAGCCCCCGCAGGGCGAGCCGGTCCACGATCCCGGTGACGTTCGACGGCTCGCACTTGAGCCGCCGGGCGATCTGCCGCATGGGCATCGCCTCGAGGGACAGCAGACCCAGTACACGCGCCTGCGCGCCGGTGAGTGCCTGCTCAGCGGCGGCCCGGTCGTACTCCTCGTGGTACCGCGCCACGACAGCGCCGATCAGCTCGACGACTTCGAGGGTCAAGGGGTCCGTGCGGGTGGCCATGGGTCCCAGGATAGCCGGTTGCTTGACAACATGAAATATTCAGACG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 3926459-3926308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVV010000001.1 Streptomyces albidoflavus strain LGO-A3 A3_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 3926458 24 100.0 39 ........................ TCTTTGACCGGCAGGTCACATCGGACCGGCGCACAACCC 3926395 24 100.0 40 ........................ TCCGTGACCGCGAGGTCGGCACAGACCAGCACCCCTCGAT 3926331 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 3 24 100.0 40 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : CCTTCTTCCTCGGGCAGGCCCTGCTCGGGAACCTCTCCGCCTCCATCGGCGACCCCGGCGTCCTGCGGGCCGTCATCGGCGCCGCCCTCTACATGACCCTCATGGCCGTCTTCTCCATGGGCGTCGCCGCGATGCTCCGCTCCCCCATGCTCTCCCTCGGCATCCTCGTCCCCTTCTTCTTCCTCGTCTCCTCCATCCTCGGCGCCGTCTCCGCCACCGAGAAGATCGGCCGCTTCCTCCCCGACCAGGCCGGCTCGAAGATCATGCAGGTGGTGGCGCCGCTGAACGACGACACCCCCTACGGCCCCTGGGGCGGCCTCGGCATCATGGCCCTCTGGGTGATCGCCGCCCTCGCCATCGGGTACGCCCTACTCCGCCACCGCGACGCCTAGCCAGACGGGACCAGGCCATCGGCCGGGTGGCCTCAAACGCCGGCCAGGCTTGAGTGGCCTCATTCGCCGGCCAGGCTCAGTGGCCTCAATCGCCGGCCGGGCTACCGA # Right flank : ACCCCCCAGCCCACCCCGGGAGGGAACTTCCGCTTGGCCGGAACCGAACGCCGGTGACTATCCTCCTTACGTTGACGGGGACAACCCCGGCAAGGAACTCTGTCGACGGGTGCGGGGAGCACATGATCGAGGCCACCGGCCTGACGAAGCGCTACGGCGCGAAGACCGCCGTGCACGACCTCTCCTTCCAGGTGAGGCCCGGCACGGTGACGGGCTTCCTGGGCCCGAACGGCTCGGGCAAGTCCACGACGATGCGCATGATCGTCGGCCTGGACGAGCCGACCAGCGGCCATGTCACGATCGGCGGCCTCCCCTACCGCCGCGTCCCGAACGCCCCGCGCCAGGTCGGCGCCCTGCTCGACGCCAAGGCGGTGCACGGCGGCCGCTCGGCCCGCAACCACCTGCTCTGCCTCGCGCAGCTCTCCGGCATCCCGGCCCGCCGGGTGGACGAGGTGCTGGGCGTGGTGGGGCTCCAGGACGTGGCGCGCCACCGCTCGAAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 5749948-5749126 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVV010000001.1 Streptomyces albidoflavus strain LGO-A3 A3_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5749947 28 100.0 33 ............................ CCCCGCGCACTCCTGCGCGACCGCCGGCGCCTG 5749886 28 100.0 33 ............................ TCAGCCCCGAGCGGGGCGCGCGGGGGGTCTCCC 5749825 28 100.0 33 ............................ GTCGCGGACGCGGATGGCGGCCTCGTACGCGTC 5749764 28 100.0 33 ............................ GGTGGAGACCGCCGGCCCCCGGGGGACCTCCCC 5749703 28 100.0 33 ............................ GCCGTCGGGCCCCCAGATCTTCACGCCCTCGTC 5749642 28 100.0 33 ............................ GAGCTTGCCACGCGGCGAGGGTGGAGGCTCCTG 5749581 28 100.0 33 ............................ AGGTCAGGAGACGGGCTGGTTGGCCCTGAGCCG 5749520 28 100.0 34 ............................ GCAGGCCGGGCCCGTTTCCACCCCCTGGGCGGGC 5749458 28 100.0 33 ............................ GCGCAGGTCACCGCCACCGAGAGCCGGGCCGCC 5749397 28 100.0 33 ............................ TCCTGGACGACGGACTCCCAGGCGGAGGCCGCC 5749336 28 100.0 33 ............................ GCTGAGCCACGCGGCCCCAGCCGGAGACCTCTA 5749275 28 100.0 33 ............................ CCCGGGAGTCTTCTCCGCGCGAGCGGAGGTACC 5749214 28 100.0 33 ............................ TCTCGGCGGGGCCACCGGTCGTAGAGGAGTGGA 5749153 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 14 28 100.0 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGCCGGCCTCTTCGTCACCCACCGCCTCGCCTCAGCCCGGATCGCCGACCGCGTAGTGGTCCTCCACCACGGCCGCGTCACCGAATCCGGAACATACGACGAGTTGCTACACCAGCCCGGCAGCCGCTTCGCCGAGCTACACCAACTCCAAAGCGGAACCGAACTGGTCCCGTGAACATTGCCCCCGCCTGGCGTCGGCCCTCCCACACCTGACCCCATTCCCGGGAGAGTACAAGCCGCCTACCAGCAGCGCCTGGAGCAACGCCCCGTACCCCCAGCAGAACCAACAGCCACCTCAGCGAGACGAGCAGGCACGCACCGTCCGGGGATTGGGAAGGGGTGACACCCTCCGATTCCGTACGGTAGGCGAGCCTCTCGCGGAGGTCGCGTACATCGCGATCTCTGAAGACGATCCCCATTCGCTCCCGACCCACGAACGAAGGGTGAAGCACATGAATGAAGATGAGGCCCCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GGAGTGCGGCGCCTGACCGGTGTCGCCTCACCGCGGGGCAGGTCCACGATGAAGCCGAGGCCTGCGGAGAGGTCGTCGGATTTCTGCTCGTGCGAGCTCAGGGCATCGCGCAGCAGTCTGAAGTACTCCGCGGCGCCCTGCTCGTTGAGCTCGTGCCCCACGCGGGGCGGGCCGCCTGCGGTGCTCGGCGCGACCTCGTGGGCGATGAGCAGCCCCTGCTTCGTCATCTGCTTGAGGGCGTGGTAGATCGAGCCCGGCTTGGCGCTCGACCACTCGTGGGCCCCCAGCATTCAAGATCATTGCGCACCTGATAGCCGTACGCCCGTCCGTGCAGGACCGCGCCGAGAACCAGCAGCCGGATTGGTGACATGAGCATGCTCATTTTCCTGCACGCAGTTATGTCCGGATGAGTTCTATACAAGTTTGACTAGCCCAAAACTGAGGTACCTTCGTCGCGACTAATCAAGTTTGATCAAACGTCGGCGACCCTGCGGCGACAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 5754871-5753379 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVV010000001.1 Streptomyces albidoflavus strain LGO-A3 A3_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5754870 28 100.0 33 ............................ TGACGCGCTCCTCGCGGACGCGGCGGCCGTGTC 5754809 28 100.0 33 ............................ GGCGACACGGACGGAGTCCTCGGTGACGCGGGT 5754748 28 100.0 33 ............................ GCCCGGCCACCGCCCCGGCCAGCGGATCGGCCA 5754687 28 100.0 33 ............................ GTTGGCGCATACCCGCAGGTGAAAGCGCAGGAT 5754626 28 100.0 33 ............................ GCCGTTGCGGAGCCAGGCGGGGATCGGCTCGGT 5754565 28 100.0 33 ............................ GGGGGTGTCGACGCCGGCTGGCGTCTCGATGCT 5754504 28 100.0 33 ............................ GCGCCATGCGGGCCTGGGACTCGGTGCCGACGA 5754443 28 100.0 33 ............................ GAGCAGGAGGCTCGCGCGGCCCGTGCGGCCCGC 5754382 28 100.0 33 ............................ TCGGGATCTACCAGACACGGACCCCCGACACTC 5754321 28 100.0 33 ............................ AGCCACACGAACAACGCCACCGCTCCGGAGGAG 5754260 28 100.0 33 ............................ CCGTGGCCGGCCAGACCGTGCCGCTCCAGAAGA 5754199 28 100.0 33 ............................ GTGCGGCCGGTACGCCCTCGCGGGCGGCGTGAC 5754138 28 100.0 33 ............................ CAGGACGGCCAGGACGGCGGCGAGCAGCTCGGG 5754077 28 96.4 33 ..A......................... CAGGGGCGCCTGACACGCGGTGTCCTCGTTGCG 5754016 28 100.0 33 ............................ ACGCGAGGTCCGCGCCCTGCTCGGCCACCCCGG 5753955 28 100.0 33 ............................ TCCGCAGACCCTCTGGCAGCACGAGCAGGGCGA 5753894 28 100.0 33 ............................ CCAGTTCCACGCGGTCCGAGGGCGCGGATACCC 5753833 28 100.0 33 ............................ GTCGCGCGGGACCCGAAGCGTCACCTTGGCGTT 5753772 28 100.0 33 ............................ GGAACCACCCGCATGAGCACCACCGAGACCGAG 5753711 28 100.0 33 ............................ GCCTGACCACGAGTCGAAGTCCCGGAGAGAGGG 5753650 28 100.0 33 ............................ GCCGGGGTTGGTCGGGGCGGTGCCGTAGACCGT 5753589 28 100.0 33 ............................ CTGGGGCGGGGCGGCGGGCACAGGTCCAGCGAT 5753528 28 100.0 33 ............................ CTGCACTGAGGCCAGCGCCGGTCCGCCGATCAG 5753467 28 92.9 33 ........................T.T. GCAGCTCGGCCTCTGCCGACGCCTGGGCATCGC 5753406 28 92.9 0 ...........G...............T | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.3 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGATCGTCGTTCCACTCGCCGCGTTCAGCTTCACCACGCTGTCCAGCATGTCCTGGTGGCGGAGCACCGACAACCGTCCGTTCCTCCTGGGTCGCAGGCACTCGCGATTCATGATGATCTTCGTCGTAGCCCTGTCCCTGATGGCCGGCTTCTTCGGCTCCGCCCACCAGAACACCGTCGCCCTGCTGCTGTCCGCGATGGTCACGACCGCCGGCATCGCCGGCCTGTGGCTCCTGCCGCCTGCCTTGGCGCCGCAACTGCTCGATCTACGCCCGAAAAAGTCGACGCCCGACCCGTCCTGACGACGCCTTGAAGCGGCGTCCCCGCTTCCTCCTTGTGACACCCTCCGACTCCCCACGGTAGGCGAGCCTCTCGCGGAGGTCGCGTACATCGCGCTCTCTGAAGACGATCCCCGCCATTCGCTCCCGGCCCACGAACGAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CAGTTTCGGAACGGGCGGGCGGCGCCTTGTCGGGTGGGCCTCCGGGGGCCTCCTCGGCATCCGCACGCCCCCTACCGTCCCAGCCTGGCCCGACGCACTATGGCTCTCCCGGCACACCCGCCGGTCCAAGCGGAGGGGCGGCAATTAACGCCCATCGTGTGGAGCGCAAGCGCTGCAACAGGGCTCTGGGTGGGTGTGCAGTCAGACGTGCGGCTGGTCATGCGTCGCCCCGCTGCCCACCGCGCCGGTAGCCTCGCCGTATGAGTAGGCCGCCAGAGATCACCCGCACCGAGTGCCGCCAGTGCGGTACCGAGATCTACGGGGTGAACGGCCGCTACTCCTGCACCGTGTGTGGCTGGGTCAACCCTTGGTACGAGGGGCACGGCGCGCTGCCCACTGCCCAGGACGACCCTGACTACCCGCGTCGTAGAAACGCCCGCTGATCTACAGCAGGCCGAGGTCCGTGTCCGGCCGGCACATACTGCAGGCCTCCACATTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 5764361-5764151 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVV010000001.1 Streptomyces albidoflavus strain LGO-A3 A3_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5764360 29 96.6 32 ............................G GCGTTCGGCGCGCCGTCGTACCCGATGGCCGG 5764299 27 86.2 32 ........T..........--.......G CCCGTGGACCTGACCACCCCCGAGGCGCAGGC 5764240 29 100.0 32 ............................. CCGGGCCCCCAGGGCGCGACCCCGCACCCCTG 5764179 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTCGGCCCCGCACGCGCGGGGATGCTCCC # Left flank : TGCGCGTCAGCGCCATCCCCGCCGTGCACCGAGGGCTCCTCGCCCGCTGCCAGCCGCTCGACGGCGGCCATGGCCTCCCCGCGATCCCGGCCCAGCGCAAGGCCCGCCGCGAGTACGAGAACAGGGTCAGCGCCCTTATCCCCTGAACAAGATCGTTCTCACCGATAACCGCTGTACCGATGTCCCCCGAGGCCGGATCAGTGGGGTCGGGAGCGCGACGCCACCACAGCCAGCTGGCGGCACCGCACCGCAGGCCCTGCCTCCGATCCGCCCTCGCTACCCCTCACCGAGGCGCTCATGATCTGTGTGCCCGGCCCTGCTCGTGGAAGGCCCCGCACCCATGTGCTCTGTGGTTCACCGGCGCGCAAGAGGCGCCGGTGGCTGGGGCGTGGCTGTCCGACTCCGACGGGCACGTCCGCATCCGGCTCCACGGCCCCGACAGCGAAGCCCTCCAGGAGGCTGGCCTCGCGACCATCCGCGACATGATCAGCAGAGGAAGT # Right flank : CGCAACTGGATGCGCTTGCCCTCGAAGGGCGTTCGCCGCCCCCACGGCAAGGTTCTTCTCCCACCGACGACCGGGACAAGTTCTGGCGCGATCTCATCAAGGCCATGACGGAACAGGCCCGCCATCTCACCGCCGACACGCGGGCGCCGAAGACCCGGCCGACGCCCTGCCACTCTTCTCATTCGGTTGACGCGCCGACCAGACTGCCCACGCAAAGCTCTTGCCAAGAGAGGTAGAGGTCGTCGGCTGCGTCCTGAAGGCTGCAGACCTGCTTTTACTGTCGGCGACTGGGCCTCGACGGTCGACTGGTGCCGCCATCGAGGCCGTCTGTCATGCCGAGGGGACGTCCTTGAACGTGTGGGTTCGATGCCACTGGTAGTAGGGTTCTCTGTTGGCGTTCCACCATGAGATGGTCCGGCCCTCCAGCTTCTCCCGGATGTACGTGGCGACTTCGGGGCTGTCTGCCGCCAGTGGACTCACGCGAAGAGCGCCGGCGGGAT # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 5777604-5776965 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVV010000001.1 Streptomyces albidoflavus strain LGO-A3 A3_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5777603 29 100.0 32 ............................. CATCATCGAGGCGGGCGACGACGCGACCCGCG 5777542 29 100.0 32 ............................. TCGCTCACCGGATCTGCTGCGGGACGGCGGGC 5777481 29 96.6 32 ............................G GCGCTGGGCGCGCTCGGCCTCCCCACCTCCGA 5777420 29 96.6 32 ............................G CGTGTATCCGAAGCGGTGCAGAGGCGACTGCT 5777359 29 100.0 32 ............................. CCCAACCCGGCGCCACACACCCCGATCCCCAC 5777298 29 100.0 32 ............................. GCCGAGAGCGGCCGGGCCTGGACGCCCCGCGT 5777237 29 100.0 32 ............................. TCCCCGGAACCCCACGGCTGACGACGTTCGCG 5777176 29 96.6 32 ............................G CTGCCGCTCGACGGCGACCATGGCCAGCTCGG 5777115 29 100.0 32 ............................. TGGCAGCGGGTGGCGTTCGTCCTCCCGCTCGT 5777054 29 89.7 32 ....A........C..............T CCGCAGGCGCCTGTCTCCGGGCCTGCCGCGTC 5776993 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.8 32 GTCGGCCCCGCACGCGCGGGGATGCTCCC # Left flank : GTGGGCGGAAGCGGTCCGCGATGCCGTCCGACCTGCGGCGTAGTATCCGGCCGTGGACATCCCCGACACCTTGATCGACCTCCAGCGCGCCGCCGACGCTGAGTGGGCGCGCCTCGCCGAGCTGACCGACAACGACGAGCGGGGGCAGCAGGGGCGCGCGTGGTACGACGCTGGCGCCCGGGCCCAGGCCGCCGTCACCGAGTGGGCGCGTGAGGCCGCGCGGCAGTCGGCCCCGCACCCATGGAAATCTCGCTCGCGACAGTCCTCGCCCTGGCGCTCTGCGGCCGGCGGGCCCACTGGGTGCTGGGCGCACGGCAGTTGCCCACCGAGGCACATGCGTGGGTGTGGACCGAGAACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCCGACCCCCGCCGCCTCTGGGCCGGCGCCCTCGTCGCACCTCCCGTGCCGAAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : TCTCGGGGACCATCCCCTGAGTAGGTGTTTGGGGACCATCCCCTGAGCTTGTTCTTTATCTACCAAGATCTTCCGGGCTTACCGATGGCCTTGAGGGTCTCGGGACGTTTGACGGTTTTGCCGACGTCGTAGCGGGGTGCCCGGCGCTTGTTCTTGGCACCGGGTGGCCGTCCGGGGCCGGCGCCGCGGGGTTTGGGAACACGGGCCGGGCAGGCGAGGTGAGCGCGGATGTTCCTGAACCCCCGACGGACCCGGGCGGGGGTGAGCCGGTCGGAGGCGGTGGGTTTCTCCCAGGGCCGGCGGAGGTCCGCGGCGAGGGGCCGGGCGAGCCGGAGCTGGGTGTGAGCGACGATCAGGATCCAGGTCCAGCGGTCCGCCGCCTCGGGAGTACGTAGTCTCGGGGTGGTCCAGCCCAGGGTCTGCTTCGCGAACCGGAAGGTGTGTTCCAGGTCGAAGCGGCGGAGAAACGCCTGCCAGAAACGGTCCACATCGTCCGGGGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 5782736-5781584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVV010000001.1 Streptomyces albidoflavus strain LGO-A3 A3_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================= ================== 5782735 28 100.0 33 ............................ TCGCCCTCGCCTTCGGGCTCGCCGTCGGGGCGT 5782674 28 100.0 33 ............................ GACGACGGCGCTCCTGGCCCTGTCCCTCTCCGG 5782613 28 100.0 33 ............................ CTACCCGTTCACGTTCGTCCAGGGCGACGCCCT 5782552 28 100.0 33 ............................ CGCCTTCCTTCCGCTGCTGCCGGTCCTCTCGGA 5782491 28 100.0 33 ............................ GTTCCTCCTGGGCCTGTCCGTCGCCGGCGCCGG 5782430 28 100.0 33 ............................ GGCCGTCCACACCTACCGACTGCCCTACTGACC 5782369 28 100.0 33 ............................ GACGATGGCGGCGTCCCGCAGCGCGGGCTGGTG 5782308 28 100.0 33 ............................ CCACCCCAGGCTCCGCGCCGTCCGGCCGACCGG 5782247 28 100.0 33 ............................ CTCGACGGTGGGGTCGAGGGCGAGCCACAAGGC 5782186 28 100.0 22 ............................ GTCGGTGCTGCTGCGGACGATC Deletion [5782137] 5782136 28 85.7 15 C....TA.G................... CTCGGTGCCGTACTT Deletion [5782094] 5782093 28 96.4 35 .............G.............. CCCCCCCGACCCCGCCTCGGACCCGGCCGAGGTGG 5782030 28 96.4 33 .............G.............. GGAGGAGGGCGCCGCCCTGAGTCCCCGACTCCG 5781969 28 100.0 33 ............................ GGGCTCGTCGTTCACGTTCCGCGTGCTCGATGG 5781908 28 92.9 33 .C...........G.............. GTACCTGAAACCGCAGCGCCTCTTCTTCGTCGG 5781847 28 92.9 205 ...........G..............T. TCTGTCCGAGCGGGACGCCGCGCTCAGCGTGAAGTCGGCCCCGCACCTGCGGAGGCACCCCGCTACCTGCGGCGAGGCTCGCGGGCCACGACGTGTCCTCTCCGCGCGAGCGGAGGTACCCCGTTGATGCCGTGACCGAGGACGACGACGCCCTCTCCAACGTGAGCGGAGGAAGCCCGCATTAGGACCTCGGCCAGGGAAAAGA 5781614 28 78.6 0 CGG........G..T...........T. | TT,T [5781604,5781607] ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================= ================== 17 28 96.6 42 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : ATGCGGGCGTTGCCTTACCAAGGTCGTGGACAGCGCAAAGCCACGCAAACAACCTGCGGCCTCGCCCCGGACCACCGGCCACCTCGTCCAGCAGGCCCCGCGTCGAAGGCGCAAGGAAGCTCTCCCACAGCCGCTCACCCACAGCCCCGGTATCAAGCAGATGCGACACAAGAAGATTCGTCTGCCCACCGGCACGCTCCGCCGACTTCCCCCACAAGACCCCTAACGGGCCCTCCACCGACTCCAGCGGCACCCTTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACGACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCCACGGCGGGCGCCCGCACCACGCGGTCACACACCGTGCTCCCTGAACTCCACCACTCGCTGCCCGGCCCACGAACGAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : AATCTCACTGGGGAGCGGCGCGGTCAGCGTGCGGCTGTTCCCGCGCTCGCGGGGATGGTCCTTGGCGGTCATTTCGGCGAACGGCACGTTGGCTCCGTACTGAGCTGAGCACCCGCCGGGCAGAGTTATTCCATCCGACCAAGGGAGAGACTGCAGTGTCGTCCGTTCCCCGCTCAGAACGATACGAGAACATCCCGCCCGCCTTGGTGTATGACATCTTCGCGGAGTTGGCCACCCAGCTCACCGGTCGCTACATCCGTCTGTCCGATACCGCGCCGTCTGCCGCGGAGCGGGACCAGTGGTGGCAGAAGGTGCTGGAGCTGCGCCAGTACAAGTGCGCAGTGCCCGCGCGCGACCGGGCAGCGTTGATAGCCCACATCAGCCAGTGGGAAGCGGAACTTTCCCGCCTTCGGGGCGCTCACTGTGTCTGAGGGCCGGGACTACTACCTCGCTGAGGAGGATCAGTGGGGTCGGGAGCGCAACGCCACCACAGCCAGCTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 5792910-5795156 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVV010000001.1 Streptomyces albidoflavus strain LGO-A3 A3_AS2_SC1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================================================================== ================== 5792910 28 75.0 117 .G......GT..A..A.....C..A... TCTCCGCTCGAAGGCCAGCACATACACAAGATCGACAGAGCCGGAACTGATCGGTACACCGCAATGCAACTAAATGAGAACGGCAGACCGCTCAGATAACGCCGCAGGTCAGCAAGT AA [5792928] 5793057 28 100.0 33 ............................ GGCCGCCGAGGTCTGGGCCGACGACGCCTGTGT 5793118 28 100.0 33 ............................ CTCCGGTGATCGATTCCCGAGGTGCCAGTGTGC 5793179 28 100.0 33 ............................ GGCGCTGGCCCACTGCGGGTCGTACGGCTTGGC 5793240 28 100.0 33 ............................ GAAGTCGTGCAGCTCCTCGGTGAGCTTGCGCCA 5793301 28 100.0 33 ............................ GTACCTGCGGGCGGAGACGCCCTCCGGGATGCC 5793362 28 100.0 33 ............................ CCGGTGACACCACGTCCGGCGTTCCGGGATGCG 5793423 28 100.0 33 ............................ GCTCTTGAAGTCCTCCTCCAGCGCCGTGAGGCT 5793484 28 100.0 33 ............................ CCGGTCTACGCCGACGGCCAGCCCTGGCCCGAC 5793545 28 100.0 33 ............................ GTGGGCGGCGGCTCCGGCCAAGTCCCGCAAAAA 5793606 28 100.0 33 ............................ GGCGATCGAGAAGCAGATGGAGAAGATCGCCAA 5793667 28 100.0 33 ............................ CAGGCCCATTTCGATCTCCCTCAGGTTGTGTCA 5793728 28 100.0 33 ............................ CGCCCCCCACGACAGGGGACACGACAGGCGGCG 5793789 28 100.0 33 ............................ TACGGCCTCGGGGTAGCCGACGTGGAGGCGCGG 5793850 28 100.0 33 ............................ GCGGGGTCGGCACTCTTCGGCTATCTGAAGAGG 5793911 28 100.0 33 ............................ CGGCCGCCTGGAGCTGGGGCCCAGCTCAGGCCC 5793972 28 100.0 33 ............................ CCGTGACGACCGGACGATGTGCATCGTCGGGCC 5794033 28 100.0 33 ............................ GGACCGGGAACCACGGCCGCTCGCGCCGCCCTC 5794094 28 100.0 33 ............................ GCCCTGGACGCGGAGCGCGGTCGCGGCCGACAC 5794155 28 100.0 33 ............................ GCACCTGGGCGCGGGTGAGCGGCTCCACCCGCG 5794216 28 100.0 33 ............................ CTCCTTCTTCGCCCGGCGCCAGGCGCGGCCCGC 5794277 28 100.0 33 ............................ GATCGAGTCCGGGGAGTACCCGCGCGGCTCGAT 5794338 28 100.0 33 ............................ GCGCCCAGCCCACCCTCACCATCCGCCTCCCCA 5794399 28 100.0 33 ............................ GGTCACCTCGGCCCCGGCGGCGCGCGGCGCGGA 5794460 28 100.0 33 ............................ TGCAACGACGGACCAGCTCATCGCGTGCGCGTC 5794521 28 100.0 33 ............................ GCACGCGACGGAGGGCGGCTTCCGCGACCGTCC 5794582 28 100.0 33 ............................ GACGACCGCGACCGAGTACGCGGCCAGGGTGGA 5794643 28 100.0 33 ............................ CTCCGGGGAGAGCCTGCTCCCCGCCCCGGAGTT 5794704 28 92.9 33 .................T.....G.... GCGACATGCCGCCCGCGCGGCCGTCGCCGAGGA 5794765 28 96.4 33 .......................G.... CAGCCACTACAACTACCGGGACACCGCCGCCTT 5794826 28 92.9 33 ...................A...G.... TCTTCGCGGGAAACGGGTGCGGGCGAACTGCCC 5794887 28 100.0 33 ............................ GTCGTCCGAGGGCCATTCCTGGGTGGTGGAGCA 5794948 28 100.0 33 ............................ GGCGCGGCCCACCTGGTCGCGCGTCACTCGGTC 5795009 28 92.9 33 ......................CG.... GAGGTCATCCGCGACGGCGGCCGGACGTTCGCC 5795070 27 82.1 32 .....T.T........-A.....G.... GCGCGCCACGCAGGACCACTGGCGCACCTGTT 5795129 28 92.9 0 ..............C........G.... | ========== ====== ====== ====== ============================ ===================================================================================================================== ================== 36 28 97.9 35 GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Left flank : ACCGCATCGCCGACACCAAACTCCTCTCACGCATCGTCACCGACGTCAAAGCCCTCCTCAATCCCCCCGGTACCGACTTCGACACCCCGGAGACCAGCGCTCTCTGGGACGAACACGTCGGCACAGTCGCCGCAGGCACCAACTGGTCCGCACAAGACACTCATCCGGCCACCCGCTCACACCTTGACCTCTCCCCAGCTGCGCTCGGAGAACAGCACATCGCCATCGTCGGACCAGAGTTCGAAGACCAAGCCCCGCCCCCGGGACAACAGCCATGACCGTCATCATCCTGATCGCGGCTCCAGAAGGCCTACGTGGCCACCTCACTCGCTGGATGGTCGAAGTCAACGCTGGGGTCTTCGTCGGCAACCCCAGCCGACGAATCCGCGACCGTCTGTGGGAACTCCTCACCAACCGCATCGGCGACGGTCAAGCCGTCCTTGTCGAACCCGCCGCCAATGAACAAGGCTGGGCCGTCCGTACTGCCGGCCGTGACCGCT # Right flank : CCTTCCCTTGGCGTACGGCGTCGGGGAGCCAGCGGTCGGCCCGGCCGACTGGCAGTCGCCCTCCGGGGCGGCCGCGGATCGCAACCGCCCGGCAGGGGAAACCCCAGGCCTGGGGCTCAGTCGTCCCTACCTTGTTGATCGGGCTGAGCGAGCCATTCGTAGGGTTGGCTCACCCAGGGGTGCCGGGTGTGGCTTTCAGTCGTCTGCCGTAGTTGTGGCTTCCACCGATTCGCCGCCCGGCGCCCCACGACGACTCGGCTGCTCATTAGGAATTGCGGCACTGATCGCTCAGTAGGGACTCGACAGCGAGGTCGTCCGTGGTACCTGTACGAACACGACCTGCGGAGTAGCGAGTGACAGCGATCTGGGCCGGTATCGACGCCGGGAAGACCCATCATCACTGCGTGGTGATCGACGACACCGGCAAGCGGCTGCTGTCCCGACGCGTCGCCAACGACGAGAGCGAGCTGCTCAAGCTCCTCGGAGACGTCCTCGCCCTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 5845799-5844934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVV010000001.1 Streptomyces albidoflavus strain LGO-A3 A3_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5845798 37 56.8 35 .ACT.ACCAAATGAGAT...G................ TTCCATGCCGACGGCGCACGGACGTGCTGCTCGTG 5845726 37 89.2 36 ............C..T..........C..G....... ATTCTCCACGTGCCGGTCCAGTTCGTCAGGCGCGAG 5845653 37 91.9 36 ............C....A....A.............. CAGAGCACGTGGCGCGGCATCACCATGCCCAACGAT 5845580 37 94.6 37 ....T.......C........................ TCCGGGTGCCCGCTGAGCGCCTGCACACTGACGAGCG 5845506 37 94.6 37 ............C.T...................... GAGACGCCCGTCAGCGGAAGCCAGGGCGGCCATGTCG 5845432 37 91.9 0 ..........T.C.........A.............. - Deletion [5845396] 5845395 25 64.9 37 ------------C........................ TGGCCGGTCCAACGGGATCAGCCCGCAGGCCGTCGCC 5845333 37 89.2 36 ..........T.C.T............A......... GTCCTCCTGCCCCTGGCGGCGGCGGTCGGCCTCCTC 5845260 37 100.0 35 ..................................... TCCGCCCGCTCCCTGCAGGCCGAGCAGGGCCCGCG 5845188 37 100.0 36 ..................................... GTCGGCGCCGCCGGTGAGGGTCGCCAGCGCGCTGCT 5845115 37 91.9 36 ............C.T.......A.............. CTCATCGCGGGCGGCACCGGCTCCGGTAAGGGAGAG 5845042 37 86.5 35 ............CC....A...........C.C.... CACATCTCCTGGCGCAGGAGCAGATGCAGGTCGAG 5844970 37 94.6 0 ............A........A............... | ========== ====== ====== ====== ===================================== ===================================== ================== 13 37 88.2 33 GTGGCGGTCGCCTTCCGGGGCGGCCGAGGATCGCAAC # Left flank : AGCTGGACTGGTCGCGGTGCGCGATCGACTCGGTGAACATGCGCGCCCTGAAAAGGGGGAGCTGACAGGTCCGAATCCTGTCGACCGGGGCAAGCACGGCTCGAAGATCCACCTGATCACGGAACGGTCCGGTCTGCCTATACCCGTTGGCATCTCCGGGGCCAACCTGCACGACAGCCAGGCCCTGATCCCGCTCGTCAAGGGCATCCCGCCGATCCGCTCACGCCGCGGACCCCGGCGGCGCAAGCCCGCCAAACTCCACGCCGACAAGGGCTACGACTACGTCCACCTGCGGCGATGGTTACGCCAGCGCGGCATCACCCACCGCATCGCCCGCAAGGGAATCGAGTCCTCGCAACGACTGGGCCGCCACCGCTGGACCGTCGAACGCACCATGGCCTGGCTCGCCGGCTGCCGCCGCCTCCACCGACGCTGCGAACGCAAAGCCGACCACTTCCTCGCCTTCACCAGCATCGCCTGCACTCTCATCTGCTACCGCC # Right flank : CTCGGCGGCCGCCAGGACGCGAAGCCCCCGCGCGGGGTCGCGGTCGCCCTGCATCGACGCGGCCTCGCTCGCCCCGCAGCTCGTCCTCGCCGGGCACCCGGTCACCGACGTGGCTGCCCTGCTTCGCGACCACGCCGCGACCGCCACCAGCCCCGCCACCACCACGGCGTACCTGGCGGCGCTCACCGGGCACTGGCACCGCAACGCCCGGCGGCCGGCGGCTGCCGGCGCCCCTGGCCTGCGGACCTACCAGCACCGTGCCGCCGCAGCAGGTCTCGCCCTCCTCATGACCCGCCTCTGACCACCGTCTCCGTGAACTCGCTCTCGGCGTGACCGGGTTCAGCCGAGATGGCGGCGAGGCGAGGAGGTACTTGCCTCGCCTCGCCCGCGAAGGGGAACCAGCGCGCTCGTCGGAGGGCTCCGCTGGTCGAACCTTGTACGCCGCCTGACAGCGTCCGGCGGGCGGCACGCAGCCACCGCCGGGCCCTCGCCCGCGCCGC # Questionable array : NO Score: 4.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:0, 6:0.25, 7:-0.24, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCTTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //