Array 1 957090-958767 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030749.1 Salmonella enterica strain MAC15 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 957090 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 957151 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 957212 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 957273 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 957334 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 957395 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 957456 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 957517 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 957578 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 957639 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 957700 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 957761 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 957822 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 957884 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 957945 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 958006 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 958067 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 958128 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 958190 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 958251 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 958312 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 958374 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 958435 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 958496 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 958557 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 958618 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 958679 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 958740 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 975026-977007 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030749.1 Salmonella enterica strain MAC15 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 975026 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 975087 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 975148 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 975209 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 975270 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 975331 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 975392 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 975453 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 975514 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 975575 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 975636 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 975697 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 975758 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 975819 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 975880 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 975941 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 976002 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 976063 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 976124 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 976185 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 976246 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 976307 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 976368 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 976429 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 976490 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 976551 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 976612 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 976673 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 976734 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 976795 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 976856 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 976917 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 976978 29 96.6 0 A............................ | A [977004] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //