Array 1 77-836 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEH01000024.1 Nocardia farcinica strain CNM20080921 CJ468_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77 28 96.4 33 .C.......................... CCGTTCGGGAACCGCCCGCGACAGCGCGAACAC 138 28 100.0 33 ............................ CAATCCGACTATACACACGCACGCGCAACAGCG 199 28 100.0 33 ............................ CCGCGGCACGTCCCACATCGTGGCCCGCGACCG 260 28 100.0 33 ............................ CGGTTTGCCGTGCTGCGCGCGGGCGAAGTCGTG 321 28 100.0 33 ............................ CGAGTACCTGCGCAAGCACATCGACGCCCAGCA 382 28 100.0 33 ............................ CGAGGACACCATCGACCTGCCGGAGGCCAAGCG 443 28 100.0 33 ............................ CGTGGGCGAATTCCTCGCGCCGGTCAAGATCCC 504 28 100.0 33 ............................ CCGATCTCGTCGGCCGGGAGGCCCGCGCGTATC 565 28 100.0 33 ............................ CGGATGCGCCTGCTCGGCCGGCTGTACACCAGC 626 28 100.0 33 ............................ CGGCACCGAAGGGTGGAGCCCCAAGCAGTACAC 687 28 100.0 33 ............................ CCTTGCCTGCACCCCTGCCCGGCCGGGCGAATC 748 28 100.0 33 ............................ CGGCCAGCCGAGCAGTGCCGGGTGGCTGTAGAT 809 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGTG # Right flank : CCTCGGAGGCAGTCGCCCGTGAGCGGGACGGACACGGGCAACGAGCACGCGGTTGAAGGACATCGTGACCCGAGGCGATACGTTGCCACAACGGCGGCGAGACGCGAAAGGACTTGGTTGATGCGGACGGACAGCTGATCGGGCTGCAGGACCATCCGCGAGCAAGGATTTCGCGGATGGGCCTGGCGCAGCTCCACGTGCCGAGAATGGGGTGAGACGTTGCGCGGTGCCGAGAATGGGGTGAGACGTTGCGCGCCGACCTGCACCGGCTCGGGGAGGCGGCCGCGCCGACGTAGGTAACGACTGCATACACCTCACCCCACGGAGATAGCTATCTGATTGCGGCGGGGTCGTGTCGAGCCCCGCGGCGTTAGCCTTGGTACTTCGCCAGAGCAGGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCTTCGGCCTGCGCGGCGTTGTTGGTTCTTCCCGGCCTGGGTGCTGCGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108691-107930 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEH01000010.1 Nocardia farcinica strain CNM20080921 CJ468_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108690 29 100.0 32 ............................. GGAACGTGATCACCATCAACGCGCTGGTCGCT 108629 29 100.0 32 ............................. CGCCCAGCGGATCGCCGACAGCCTGATATCGG 108568 29 100.0 32 ............................. GCCTTCGCGTCGGCGTGCTCGGTGAGCATCAC 108507 29 100.0 32 ............................. ACAACGTCCGCATCCGCCCCTCCACCAAGGAG 108446 29 100.0 32 ............................. TCGCCCGCCTGCACCTGGAGACGCGGAGCCTG 108385 29 100.0 32 ............................. GGCACCGGCTGGATTCAGACCGAGGAACAGGC 108324 29 100.0 32 ............................. GCCAGCTATGCAACTTCTATGCAATGCGGATT 108263 29 100.0 32 ............................. TGGGCGAGGGCGACGTGGTCGTATGCCCCGTA 108202 29 96.6 32 ............................A CGACCACTAGAACCCAAGGACACGCCGGTGGG 108141 29 100.0 32 ............................. GAGGTTCCGCTCAGCCAGCCCGACTTGTCCTC 108080 29 100.0 32 ............................. TCGCGCAGCGTGGCACCCTGCCCGGCGCGGCC 108019 29 96.6 32 ............................A GCGCGGCGGCCTCGGTCTTGCGGTGGCGTGTG 107958 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGACAACCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCTGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGACGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAGGAAGT # Right flank : TGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGACTGGGGCGCCGCTTCCGCGGTCGTGAAGACGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGCAGGATCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116581-115883 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEH01000010.1 Nocardia farcinica strain CNM20080921 CJ468_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116580 29 100.0 32 ............................. AGGCGGTGCTCGAAGGTCGTGAAAACATTGCT 116519 29 100.0 32 ............................. GGCGGCGCCGCGGGCACCCGCACCCCCTCGAC 116458 29 100.0 32 ............................. AGGTCGCACACGCTGTTCACGAACACCCTGCG 116397 29 100.0 32 ............................. TCGCCGCCGTCGGGGTCAGGGACCTCGTAGGT 116336 29 100.0 32 ............................. CAGCTCAGAAAGCCGTCGAGCAGCGTGCCGGT 116275 29 100.0 32 ............................. AGTCCTCGAGGCGGCCCGACCACCGTGCCCCG 116214 29 100.0 32 ............................. GGCGTCACGGGGAATGTCCTGGTCAGGTCAGC 116153 29 100.0 32 ............................. CACAAATCGCGCACGCGAGGCACATTGTCGAA 116092 29 96.6 32 ..............A.............. CCTTGAGGCCGGAGTTCCCGCTCCAGCCTCAA 116031 29 100.0 32 ............................. GGCTGCTCGATTCCCCGTTTCGGCACGCCGCA 115970 29 93.1 31 ...A..................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGAA 115910 28 79.3 0 ....CT.......GG.A...-........ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.4 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGCGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCGTGGGTCGTCGTCGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGCCCCGTGGGAAGATCGCCGGCAACTGAAATGGGATCTCGCAGGATCGGCGACGTAAGATGACGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACCCGCAGGTCAGGAAGG # Right flank : GAAGGCTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCGCATGCAGGGAATGTAGCGGTTGACGCCGGGAACCCGGAGGCCGGTTTCCTCTTCGACCTCGTCGACTTTGCCGCTGGGCAGTTCCCAAATGCCGCCCATGAAGTCGTTGCCGGGTCGGCGCAGCAGCAGGATGCGGCTGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGAGGTCTTCGAGGCGGGTCGACATCAGGTTCATCCATTTCGCCCGGAAGGAGCAGCTGACGGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAATTCCTCTGGGGTGACGCCGAGTTCTGTGAGGATCGCGCGCAGTTCTGCGAAGGCTTGGGGCAGGTCGGGTTCTTCGGCTTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCGG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51252-50856 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEH01000028.1 Nocardia farcinica strain CNM20080921 CJ468_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51251 29 100.0 33 ............................. TCGGGGGTGTCGCCGACGTCGGGGCCGTCAGCG 51189 29 100.0 33 ............................. CGCATGGCCGACCTCAACGCGCAAACCTCCGCC 51127 29 100.0 32 ............................. TCCACAGCCGCAGCGCTGAAATCACGCACCGG 51066 29 100.0 31 ............................. GGTGACTGTTCACCGCGGTAGGGGGCGCGGA 51006 29 96.6 32 .G........................... GAGATGAACCACCCGACACTGATCACGATCGC 50945 29 100.0 32 ............................. GGGGAGTGATCCGGGGTTCCGTCATCGGGCGC 50884 29 93.1 0 ..............T...........T.. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 98.5 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCGGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGAACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGACTTCGTGCGTCCAGGGGGTGCATGCGGTACACGTCCAGGACCGTGAGCGGGAACGAGGCCACGAGCGTCAACAGGCTCGTTGTGGGGCTGTTGGAGCCCGTGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGTTCACGCGGGACGACGGCGATGTGGTGTATCAGGAGGTGGACTGCGGCGCGTTAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : GACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGATAAGCCCGCGACTTGGTCGCGTTCGGGCTGGGCAAGGTCGTACCCCCGCGCACGCGGAACCGCCTTCTTCGGTCGGGCAGCAACCGCACCAACCGCCCGCTGGCTCCGGTCGAATCCGCCGGTCCCACCGGCGTCCCGCGTCCTCGACCCTCGGGTGCGCGCACCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCAGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1536-290 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEH01000133.1 Nocardia farcinica strain CNM20080921 CJ468_133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 1535 28 100.0 33 ............................ CCCGCTCCCCCTATCCGGCTGGTAACCGGATTC 1474 28 100.0 33 ............................ TCCGAGCCCGACCAACCCCAGGTCAGAGGCACA 1413 28 100.0 33 ............................ CGCATGGACCCCGGCCACATGCGCGGCTTCATA 1352 28 100.0 33 ............................ CTAGGCGGTCACCGTGTTGCTGGGTTTGAATCG 1291 28 100.0 33 ............................ CCGAATTGGGTATCGAAATGGTTTGCCACGTCA 1230 28 100.0 33 ............................ CGCGGTCAGGCTGGTGTTGATCTCGCTGATCTG 1169 28 100.0 33 ............................ CGCCTGCCTAGGGAGTCCGCCGAACATGACAAC 1108 28 100.0 30 ............................ CGCCAAACCCACCACCACCACCGCGGCGAC 1050 28 100.0 33 ............................ CGCCGACTCCTTGGACTCGACGTAGTTCTTCAG 989 28 92.9 33 AT.......................... GCCGAGGTCGATTCCGCGGGCGTCGGCGTAGGC 928 28 92.9 33 AT.......................... CTGCTCGACACCGCTTCGCGTGAGGCACCAGGC 867 28 92.9 33 AT.......................... CTTCCGCTTCTGACGAGCCGAACGCCGCTCGGT 806 28 92.9 33 AT.......................... CCCTTCGACCGGTCGGGCGTCGTCCTCGAGGAC 745 28 92.9 33 AT.......................... CGGGTTCACGGGCTGGGCGACCGGGAAGCGGTT 684 28 92.9 33 AT.......................... CACCGCGCCCCAGACGGACGCCCACACCCAGGA 623 28 96.4 33 .T.......................... TCACCCGGTCACCGTCCGCCACTCGGTGACGTA 562 28 92.9 33 .T............C............. CTCGCCAGCGTGCCCGCGAAGGTGGCCGATGCG 501 28 96.4 33 .T.......................... CGACGTCGAGAAGGCGCAGGCCCAGGTCAACTT 440 28 96.4 32 .T.......................... CGCGAACGGGCGCCGCCGTCGTCGGGGAAGAG 380 28 96.4 35 .T.......................... CCCGGTACCGCCGCCGCCACCCCCCCGCCCCCGCC 317 28 89.3 0 .T............C...........T. | ========== ====== ====== ====== ============================ =================================== ================== 21 28 96.4 33 GCGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : TGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTGGTGGGCTGAGAACATGCAGGTCAGGAAG # Right flank : CCGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTTCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAGCCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGGCCCGCGTCCTCGACCCTCGGGTGCGCACCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 153-546 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEH01000061.1 Nocardia farcinica strain CNM20080921 CJ468_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 153 28 100.0 33 ............................ CCCGCGAAGCCTTCGCCGAGGCCGAAGGAATCC 214 28 100.0 33 ............................ CGGGACCGACGTGGCGCGTGCCGAGGAATTCGA 275 28 100.0 33 ............................ CCCCATGACCCCCACCGAGGTCGACGCCGCGTG 336 28 100.0 33 ............................ CGGCAGGGCGAAGCGGGCGATGCCCGCCGACAG 397 28 100.0 33 ............................ CTACGAGAGCAAGGGGATCGGCCTGGTCCTCAT 458 28 100.0 33 ............................ CGGCGGATTCGGGGTGCGCTGATGCATCCGCTG 519 28 92.9 0 ...........C........A....... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GGCAGGGAGCGGAGGCCCTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTGTTGGGGAGGTGAGGAACCGACTGAAAGTGAATGAAAAAAGCGGACGTTGGCTGAGGAACTGCAGGTCAGGAAGTG # Right flank : CCGGTCGACGTGGCGTGGCCCACGGCTCCCGCAGAGGAGGTGTTCGGCTGCGTCGTCTGCGTGTGCGCCGCCCACTGACATGTGTGGGTTTCGGTAGTAACCGCCGAAAACCAACGGATATGGCGTAGAAGCTGGTCGGCGCCGGTTCGTGTCCGGGGCCGAGGAGCGCGGTGAGCTTTCAATCAAGCGTCCACGGTTCCTGGAGGGTTAGCCTTTCCTGCATGAGCACGCCCGACACCGCACTATCAGCCGCAGCGGCCGGTCGCCGCCGCTTGTCCTTGGGTATGTTCGCGCTGGCCGTGATCGTGTATCTGGCGATCATCCAGCTCGGTGGTCTGTTGATGACCGCGTTGACCGGTGAGGACGATTTCCTGTCCACGCGCGCGGTGTTCTACGGCATGATCATCCCCCTCGGTATCGCCTTGGTATTCACCTACGGGTTGATTGCCTATCTGGGATGGCTCCACCCGGTCTTGCATGATGATCGCTCGGTCCGGTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2252-2707 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEH01000061.1 Nocardia farcinica strain CNM20080921 CJ468_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2252 29 96.6 32 ................T............ GAGCCGCTGCTGACCGAGGAGCACCTGGCCGG 2313 29 96.6 32 ................T............ TCTTCGACCTCCCGATCAAAAGCCCTCCACCA 2374 29 100.0 32 ............................. TGATCCGGGCGATCCTCGACGCCCTCACCGGC 2435 29 100.0 32 ............................. TGAGCCGCGATACCTATCGAGCTACGTAGCCA 2496 29 96.6 32 ....................A........ GAGAGTTACTGATCGGGATGACTTGAGGGTGG 2557 29 100.0 32 ............................. CGGCCACGGCGTCGCGTGTGGACCGGCGGCTC 2618 29 89.7 32 C...................A..T..... GAGAAGCTGATCGTCGCCGACCTCTTCACGCT 2679 29 75.9 0 ..............T..T.C.TC.C.G.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 94.4 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GTGGAGAAGCCGCCACAAGGCCACTTCTTCGCCTGTTCTACCGGTGCGGTATCGACATCATCCGCGAACCAGTCGTCCTGCTGAAGTCGAACTTATTGAAGCCGCCCTCGACGCCTTGGCCAGCGTCGGGCTCGGCGACATGAGCGGCATCGAAAGGCGTGCCATCGAGCGCGTCTTCTGATGGAGTGGGAGGGGATTCGAAGCCTTGGCACGCTACCGGCAGGGCTGTCCGGTCGCCGGGCTGCGTCCAGAGTCCGGGCAAGAAGCGGCGCAGTTCGGCTCCATGTCTTCCATTCCTTTCTGGTCCGGTTGGGCCGCCACCGTGTGCTCGGCCACATTAGGGTAGTGGCGACGTTCGGGAGGGGGCCTTGCGCGTCGAGTCAATGGCACCGTGTGTCTGGCTGTCGACCGGTGCGATGGTGAATGTCAGGGAGGTGAGGAGCTGGCTGAAAGTGAATGAAAACTGTGGACTCGTGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CGAGCGGGCGATGCAGTTGCCGATGGTCTCGAACAGCATCGGTAATCCGCGCGACCGGCCGCGACCCGGAGCCCGGTCATCAGGTGGGGGTCTTGCCGGTGCCGCGTGGGTCGCGAGAGTTCAAGTCCTTGGCGTGGGACGAAGGCACTTGGTCAACATGGGTCTATGGGCTTCCGTGGCGGTTCGGAGAGGCCGCCGGAGGCCGCGGAGTGACATGCCGTGCGGCGCCACGGATCAGGTTGAGCCGCAAGGGCAAGTCCGCACTACCGAGATCGGCCCCTTTCCGCCGCGTCAGTGGATAGCATTGTCCACGTTGCCGATGAGTCCGAGCGAACCTGAGATATCAATGGATTTCGACGAGATCGACTTCCTGCGTCGCAGCGATCCCGCATGGCGGCTGTTGCGGGCTGACCACGCGCCCCTGGTCCTCAGTTTCTTGCGGAAGGTCTTCGTCGTGGACAACGTCCGGGCGATTTCGGCCACCGAGCTGGCCGGCCGTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGCACGTGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 13667-14259 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEH01000061.1 Nocardia farcinica strain CNM20080921 CJ468_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 13667 29 93.1 32 .......T....G................ AGGTGTCAACCGGGGCACCACACACCACAAGG 13728 29 96.6 32 ............G................ CGGCCCAATCGGGGCACCCAAGCTGATGTACC 13789 29 96.6 32 ............G................ GGGCGCGAGACGGTGGCGGCGGTGCGGTGGCG 13850 29 96.6 32 ............................T CTAGCGCGCGCGTTTCGGGTGTCTGCGCCCTC 13911 29 100.0 32 ............................. GGCGCGAACGCCGCGCTCGGCGCGACTCTCAT 13972 29 96.6 32 .............G............... GTGAACACGGTGACCGGCCCGTACCGGCTGTT 14033 29 100.0 32 ............................. GTCATCCCGCCGCCCGTGGTGTTGACCGCGTA 14094 29 96.6 32 .............C............... CCTGCCCGAATCCCCATCCGATCTGCTCAGCG 14155 29 93.1 46 ..........T..............A... AAGATCTGCATGTAGGAGGACCGTCGTTCGGTGCATCGAAGTCGAC C,T [14160,14183] 14232 28 75.9 0 A.......G..A..T..-C...C...... | ========== ====== ====== ====== ============================= ============================================== ================== 10 29 94.5 34 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GAGAGCTGATGACCCCTCGGTCGCACCTGGCGTGGCGTTCCTTCGTCGCCATGAGCCTCGGTGGATTCATCGCCCGACCGGATGGTGACGTGCGGTGGCTCGAAAGTCTGCCGACGGACAGAGGCCACGTCACGACGAGCGCAGCGAACCCCGCCCTGGTATGGGAGACGTTCTTCCCCGACATCGACGCGCTGGTGATGGGGCGAAGCACGTACGAGAAGGTGCTGACGTTCGGCGACTGGCCCTTCCCCGGTCTGACAACGCTGGTGCTCAGCAATGCGCTCGACACCGACGACGACAACATCGAGCCGGGGCTGTCTCCGTGTGCTCGGCCTTATTAGGGTAGTGGTGACGTTTGGGAGGGACCTGGCCCGTCGAGTCGATGGCACCCGCGTGGCTGGCTGTTGACCGGGTGCGATGGTGAATGTCGGGGAGGTGAGGAGCTGGTTGAAAGTGAATGAAATTGTGGACTCGGGCTGAGGGACTGCAGGTCAGGAAGT # Right flank : GGTCCGCCGATACCGTCATCGACCGATCCGGGTGCTCCCCCGCACGGGAGCAACCCCTCGGCTGACAACACGCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTA # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGGACGCGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3814-2929 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEH01000073.1 Nocardia farcinica strain CNM20080921 CJ468_73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 3813 29 100.0 32 ............................. AGCCCTGTCTCTGATTCGCTGGCCGAGTCTTT 3752 29 100.0 32 ............................. GGCCCGAGGAACTTTCCGCTTGCCGTCTTCGC 3691 29 100.0 32 ............................. ACGCCACCCTCGCCGCCCGTACGGTTCCGGAA 3630 29 100.0 32 ............................. ATCTGCCGTGCTCACGAGGTCGAGCGCACCGA 3569 29 100.0 32 ............................. TCGACGGCGCAAAAGCTCATTGCCAGGGTGGT 3508 29 100.0 32 ............................. CGGGCCCAGTCCCGGCCGCTACGGAGCAACAC 3447 29 100.0 32 ............................. TGTAGGCAAATAACCAGATCGGGGTGTCGATG 3386 29 100.0 32 ............................. GCGATGATCTCGCCCACGGTGGTGAACGTGGC 3325 29 100.0 34 ............................. CAGTGTCCTGCCCTAGCCACCGACACGCCTGGCG 3262 29 100.0 32 ............................. CCCGCTGGCGAACACCCCGCTGGCGAGGTCGA 3201 29 100.0 32 ............................. GAATTGGCGTCGTCCGTATCAATCTCGCCATC 3140 29 100.0 32 ............................. CGACCCGACATGGAGCACGAACTCCAGGACTC 3079 29 100.0 32 ............................. TGCGACCTGCACCGCAAGATCTTGGAGCAGGC 3018 29 100.0 32 ............................. ACCGAACGCATGTGTGCCGCCGCCGTGATCGC 2957 29 86.2 0 ..............T.......GA....G | ========== ====== ====== ====== ============================= ================================== ================== 15 29 99.1 32 GTCGGCCCCGCACGCGCGGGGATGGTCCC # Left flank : AATCCCCCACACCGCTGAACCAGAAACCACCACCGCTCACGACATACGCATCATCGCCCGCAACCGAGTCGCCTTCGGCAAGAAGAAGCACAACCGACAGGCCGGGACCGTCACCCTCCACACAGCTACCTATGAAGGCAGACTCGAAGTAACCGACCCCGAACGCCTCACCACAGCCCTGCTCAACGGAATCGGGCCAGCCAAAGCCTACGGCTGCGGACTACTCACCCTGGCGCCGCTGCAAAGACAATGACTTCCCGATACCGGACGCACAGCCTCCACCAGTCCACACGAGCGACAAGCAAGATCATGAGCGTCAATCGTCGACCACCGCCACATCAAACGCGACGAGAACCCGATCACCGCGATCAACCCGATTCGCACAACCAGAACTGGTGGGATGCTGGCCGCCGGTCCCTCTACCGGCCTCCCGCGCCCACCCGCAGAGCAAAGTGAATGTAAAACGCGCCCCTCGCGAATATAACCGCAGGTCAGGAAGT # Right flank : TGGCAAACCGGCGATCTCGGCCCAGCTTCGGGTTAGGCACGAGCATCACTGACTGAGCGGCCGAAGCAGGGCTGATTCCGCCGCGCAGCGGCCAGCCGACCGCCAACGAGGCATTGAGCCTGCCCCGCATCGCCCTCGAAGGCAGCAACCAGACCGAGAGCCGAACGGGCGACAGCGATAGCCGCATACGTTTTCAGCCCCAACGCGGAGCGGATATGGTGCGTCGCGGCTGCACTCGAGGCCGGCATGGTCGGCATCAACTCAGGCCTGATCCCCAACGAGACAGCGCCGTTCGGCGGCATCAAGCAATCCGGCCTCGGCCGGGGGGGTCGATCAATGGACCATTCGCAGCACGACGGCAGGACCGACGTCCCGTCTCTCCAGCTGCGTTTGTGCTGCACCGATGTATACTCCGAGTGTCTCGAGTGAGGTTGTGCTGACGCGGGATGAGCAAGGGGGGAGTGAACGTGCCAGATCCGTCGACTTCGCTGACAGTGACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6535-6127 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEH01000088.1 Nocardia farcinica strain CNM20080921 CJ468_88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 6534 29 100.0 32 ............................. GACGAGGTGTTGAGCCAGTTCGCTACCTATTT 6473 29 100.0 32 ............................. AGGTCAGGGGAGGTGGGTGGGGGTTGGGTGCA 6412 29 96.6 32 ............................T TCGCCTGCGCTACAGCGACTCTGAGCCGCTGT 6351 29 96.6 32 ....................A........ CACCTCGTTCGGGTTCTGCGGGACGCTCATTC 6290 29 100.0 32 ............................. GCGAAATCGGACTCCAGGAACGGCACCCCCGC 6229 29 96.6 46 .........................C... CCATCTGCTTGTAGGAGGACCATCGTTTCGGTGCGCCGAGCTCGAC 6154 28 72.4 0 A..T....G..A..T..C..-......A. | ========== ====== ====== ====== ============================= ============================================== ================== 7 29 94.6 34 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CAACCTCGCCCACGCCCGTTGACCCCAGCCAGGGGCAGGTCGTCATCGCCGGGTCGGACTTACGGGACAACCCTTAGGCGCTTAGCTTGTTCAGGGGTGGCGTGCACGCGATGCACGTCCAGCTCGCGAGTAGGAACGAGGCTACGACCGTGAACGGGTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTCGGTCGTGGGAACCTGTGCGGAGGCTCACGCGGGACAAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTGGTGGGCTGAGAACATGCAGGTCAGGAAG # Right flank : GGTACGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCCCGCACGAGGGCGACCCCTCGGCTGGCAACGCCGCCGCGCCGCGTGTGCCCCACGCGTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTACCGCTTGCTACCCTCGTTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTTTCTCTCGTAAGGCATCTCGCTGATTCGGGTGAGGTCGCGAAGTTGGTCTGGGACCGGTGGCTGCCGGCCCATACACGCCGGCGGATCTCGGTTGGCTTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTAC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77-1141 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEH01000141.1 Nocardia farcinica strain CNM20080921 CJ468_141, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77 28 100.0 33 ............................ CCGCGAGATGCTGGAGCGGCTGATGAAGACCCG 138 28 100.0 33 ............................ GGCAATTTTGGTGGCGTGCTCGTAGTAGACCGG 199 28 100.0 33 ............................ ACTGTGATTGACAGTGTGGAAATCTACGTATGC 260 28 100.0 33 ............................ CGACACGACCCTGCAGCGGATCGTGATCGCCTG 321 28 100.0 33 ............................ CCAGCCGCCGCTCATGATCGGCGAGGAACATCA 382 28 100.0 33 ............................ CAGCCCAGCGCAGCGACCACCCGACCAGGTGGG 443 28 100.0 33 ............................ CACGGTCGCCCGAGCGATCAACGAGCTACAGAA 504 28 100.0 33 ............................ CGCCTTCGACCCGGCCGACATGACCGCCGCGTC 565 28 100.0 33 ............................ CGCAGGCGCGAGCGCAGCTCGCGAACGACGGCG 626 28 92.9 33 ..........................AA ACCGGCGTGCGGGAAAAGGTGCAGGCCGTGGTA 687 28 100.0 33 ............................ GGCGAGACCCACGGCCGCACCATCGGCATCGGC 748 28 100.0 33 ............................ CGGCGGCATCACCCGCACCGTCACCATCCAGCT 809 28 100.0 33 ............................ CCTTGACCGGGGTGTTCGCGCGTTCGGCTTCCC 870 28 100.0 33 ............................ CCCGATGACCGCCATCCCGCCACCCAAGCGGAC 931 28 100.0 33 ............................ CCGGTCCTCACCCGTGTCGGGCCCGCGGTACTG 992 28 96.4 33 ........G................... CTCGAACGGCAGCGTCCAGAGGTCGCCCTCGGT 1053 28 100.0 33 ............................ CCAGCCAGCAGCGAATGCGTTGGCGGTCAGCAT 1114 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGTG # Right flank : CTCGGAGGTAGTCACCCGTGAGCGGGACGGACACGGGCAACGAGCACGCGGTTGAAGGACATCGTGACCCGAGGCGATACGTTGTCATCCACAACGGCGGCGAGACGCGAAAGGACTTGGTTGATGCGGACGGACAGCTGATCGGGCTGCAGGACCATCCGCGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 801-345 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEH01000145.1 Nocardia farcinica strain CNM20080921 CJ468_145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 800 29 100.0 32 ............................. GCTTGCCGCACGTTGATGAGGTGGCCGACAGT 739 29 100.0 32 ............................. AAGGGCCAGATGTCGGCGCTCGTGCGGGGAAC 678 29 100.0 32 ............................. GTACTACGAGATCGAAAGGGAGAGTCCCGAGC 617 29 100.0 32 ............................. CGAGTTCACATCATGCCCGCTGTGCACCCCTG 556 29 100.0 32 ............................. CGTGAAGGTGTCACCATCGACACCAAGCTCAC 495 29 100.0 32 ............................. TGCGCGGCCAGCTGCTCGGCCTTGGTGCCCTG 434 29 100.0 32 ............................. TATGCGGAGGAAGTAGAAGAGGTGGTAGCGCT 373 29 96.6 0 ......................C...... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGCGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCGTGGGTCGTCGACGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGCCCCGTGGGAAGATCGCCGGCAACTGAAATGGGATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCGGCCGGTCTTGCCCTTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACCCGCAGGTCAGGAAG # Right flank : CCGGATTGCGGCTTTGTCGTCTCCTTCGAGAAGTGCCTCCCGCGGGAGGGATGAGCCCGAAGACTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCCATGCAGGGAATGTAGCGGTTGACGCCGGGAACCCGGAGGCCGGTTTCCTCTTCGACCTCGCGTGCTAAGACTTGGTCGAGGATCTCCCCGGGTTCGACTTTGCCGCTGGGCAGTTCCCAAATGCCGCCCATGAAGTCGTTGCCGGGTCGGCGCAGCAGCAGGATGCGGCTGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGAGGTCTTCGAGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 154-424 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEH01000106.1 Nocardia farcinica strain CNM20080921 CJ468_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 154 28 100.0 33 ............................ CTGGCCCACCGTCTGCTGCACACCTACCGCGAC 215 28 100.0 33 ............................ CGGCGGGTGCCCCGGCCGATCCCTACTCGGCCG 276 28 100.0 33 ............................ CGAGAGCGGCTCGGGTGTGATCGGAACGAGGAC 337 28 100.0 33 ............................ CACCACCGTCGCGATCAACACCTCCGGTGAAAC 398 27 82.1 0 ...T.....-.A..G...........G. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 96.4 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GGCAGGGAGCGGAGGCCCTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTTGTTGGGGAGGTGAGGAAGCGACTTAAAGTGAATGCAAAAGGCGGACGTTGGCTGAGGAGCTGCAGGTCAGGAAGTG # Right flank : CTCTTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTAACCACAGTTGTTCAATCGTCGTAGTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGGCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCACTGTAATGCGCCGTTGACGGCTCTACGTGAGACGCACTTGGCGCGGCCAACCAGACATCGTTGATGGACACAAAGCCAGTCGAGCGAGCATGAACACACAGGCGCGTCGGGCCTAGCACGATAGCCGCGCCGGTCCCGGATACTTCTACCGGTTCGACCAACCGTCGCGTGCTCCGCTTACCCCAACCGCGGTCAGAGCATTCGCGCACCCGGCGGTATCCCACCCCGGCAAGCCAATTGCACGCGTCCACCTGTCCCAGCGCGTGCATCCCTGCCGCTGTCTCAATCCGGTTGTGCACCGGCACCTGAGGAAGCCGGCCCGGCCCGGCCCTGTG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2673-2998 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXEH01000106.1 Nocardia farcinica strain CNM20080921 CJ468_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2673 28 100.0 33 ............................ CTGCCGCAGCCTGCCGGCGTGGACGATGGTGCG 2734 28 100.0 33 ............................ CGTGGTGGCGAAGCAGGTCAACGCCCCGTCCCG 2795 28 100.0 33 ............................ CCGACCCCGATGGGAACGTCCGAGCGGCGGCGG 2856 28 100.0 33 ............................ CTGGCTGTCGTTGGACTCTGGGTCGGCATCGGT 2917 28 100.0 26 ............................ CGCACGAAGTCGGCCGTGTCGTCGGC Deletion [2971] 2971 27 85.7 0 ........A.T....A.....-...... | A [2979] ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.6 32 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GAAGAGCACGGCGAGACCTCACGACCGGCGAACTCGGAAGTCTGGCCCGGCGGGTGGGAGTGGTGCCCAACTGATCCGCAGGTGGCTTGTGTTTCCACGTTCCGAGAGTGCTAGGACATGCAGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCGAGCGCACTCGACAGAGTGACTGTCCGATCGACATCTCCTGCGATTCTGACAGTGTGGGTCTGGGACAAGTCCCTCACTGCGTTAACTGCATGCGTGTCCGAACGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTTGTGTCGTCTGCGTGTGCGCCGCCCACTAACGTTTGTGGCAACCCATCGGGCGGGGCCTGGTCCATCCAGTCGATGGTGCAGCTCCTCAACTGTCGGCAGGTGTAATGGTTCGTGTGCCAGGGCAAGAACCCGAGTGAAAGTGAACGAAAACCGTGGGTTTCGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CGCAAAACGCACTGAACGGCCGGTCCAGCAGCGGTCTGAAGCAGTCGGAGCGCGCGTCGTAAGGCACGTTGCACCAGCGACCGTGTGGCGAAAGTGGTTCAGCGGCTAGCGTGCTTGGATGCCCAAGGAGTGCCTGCGCCAGCGCGATCGGTGGACGAGATCGCGACTTTGGCAATGTCTCAGCGGCGCATGTCTTAGATGCTGGGTGGGACGGACGAAAGCGGGGAAAAGGCGCGGTACTACCGCATGACAGCCATTGCGCGCTTCCATGACTTGGATGTGGTCCGGGATGAGACGGGAAGTCTGAACACCAACCGCCGGCGATCAACAGCGACCCGACGCGCGGGTAACGACCGATTGTGGCGAGGAGTTTCTCGCTCGTAGCGCGAGGACCTCCCGCCCGAGATTGTGCACCTGCTGGTATTCGGCCAAGTCGGCCATTAGTGGACCATCACAAGCTAAGGGCTGTCCCGTAAGTTGTTGAGCGCCAGCCGTTATCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //