Array 1 233192-231957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLWH010000003.1 Enterococcus sp. DIV2402 scaffold1.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 233191 32 100.0 35 ................................ AGAAAGTACGCTACACTCAAGAAGATTTTGAAAAT 233124 32 100.0 36 ................................ TAGTGATGATTTAGATGATATTTTAGATAATATGAA 233056 32 100.0 34 ................................ GATAAGGTCGTCTGCGTCCTCTTCGTCCTCAATT 232990 32 100.0 34 ................................ CGATGGCATTGTTGGTTAGGTATAAGATAAGAGA 232924 32 100.0 34 ................................ TTTGCTTACCTCATGCGGGTTATTTTTATTTTGT 232858 32 100.0 34 ................................ GCTATTTAACAACTCGTCTAAAGTGTTGTATTCC 232792 32 100.0 35 ................................ TACTATAATTGGTATGTACCATTTGCCGTGTTGTC 232725 32 100.0 36 ................................ ACCTGTCCTAGATTCATTAATCACACTGGAAGCATC 232657 32 100.0 35 ................................ TTTTGTTGCCCACGATAGTTCATTCGATCGTGCCG 232590 32 100.0 34 ................................ TACAGATGCAAGTGACAATACTGTTAAACTCTAT 232524 32 100.0 35 ................................ TCTCGAACATCTACTGTTCGGCCACTTTGACTGCC 232457 32 100.0 33 ................................ CACAAGTTTATCGTATCGTATTTTAATTGGTTC 232392 32 100.0 35 ................................ TCAACGCCTGTGAGTCGCTTTAGTTTACGAGAGGC 232325 32 100.0 35 ................................ CTACTTGGGCTTTCAGTTACATCTACTCTGTAATA 232258 32 100.0 36 ................................ CAAACCATTAAGCACAACACCTGAAATTGAGTTTTC 232190 32 100.0 35 ................................ AATATATTGGGGGAGAGAGCGCCCAGAAAATCAAC 232123 32 100.0 34 ................................ GCACGATCAGCAACCATCATGAATTACGCTGGTT 232057 32 100.0 36 ................................ ATTTTTCGTGAGCAAATTTTTATTGATGTACTCTTG 231989 32 93.8 0 .....................AC......... | A [231964] ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.7 35 GTTGCAGTCTTCGTGACTGCATGGATTGAAAT # Left flank : TAAAAGAAGCTATCAAAAATGTCGTTGATTGGGGATTGGCAACACCTGAACAAGCAGTTATGATGGCAAGTTTAGTACCAGCTGTTAGTTGTAAAATTGATGATGTATGTGGCATGATTAAAAAAGGCCGTGCTGCAGACTTCATCGTTCTAAATTCAGATATGACACTTGAAGCTACTTATTTAGACGGTATTAAACGCTTCGATGCATCTAAATAATAAATGAAACAGAGTGAATATTTTTCGCTCTGTTTTTTTATAGTAAGTCGTCATAGTTAAATGATATAATGAATTAAAAGAAACTACTTCATTTAGTGAGATTAGTGCGAATCCCAAGCTCCCAGAAATTCTCTAGGAGATTCGCACCATGAAATATCCTATAAATGAGAAAATGATGAGAGATAAATACGATTATATTCGATTTTAAAAGAAAAATACATATAATTGGGCGATATTCATCAAAAAATAGGAAGGTTTGCTATTTTTTTACTTTTAATCGCC # Right flank : ACGTAAACTATCGCCATAATTAGTTTGCTTCTCACGTCGTCGTAGGCTCCATAACGACATCAATTAAACAGGTCATCACTACATATTTTTCCGCAAGCATCTTTTATTAAAAGTCTATCTAATCATACGAACTACCATCTCTAGAAATCCTTTGAGTAATAAATAGTGAACTGGTTAACCAAAATTTATTTAATCAATAATTATTAGGTGGGCTTCAGAATCAAAGTATTGCTTAAAGAAACGAGAATTGAATTGATTCTCGTTTTTTTATATGTAAAAAAACGTCTGTGTTTTTATTTGTTTGTGTTAAACTAAAGAAAAAGGGGGAGGGCAAATGAGTTACATTGAAGTTATTGATGAAGTAAAAAAATATCAGATGGGTGATACGACAATCATGGCAAATGATGGTGTCACTTTTGGTGTTGAAAAAGGCGAAGTAGCTGTGATTTTAGGACCGAGTGGTGCGGGAAAATCAACAGTTTTGAATATATTAGGTGGCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTCTTCGTGACTGCATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCAGTCTACGTGACTGCGTGAATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 345517-344413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLWH010000003.1 Enterococcus sp. DIV2402 scaffold1.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 345516 32 100.0 35 ................................ AAGGGTAAAAACCTCAAAAAAGCTAAAACGCCTTT 345449 32 100.0 35 ................................ AGTAAAAAATATAGTTCGTATTTCCATCTTGGTTT 345382 32 100.0 34 ................................ GTCTTTTGGTTGATTTTTACTGTCACGACTAAAA 345316 32 100.0 34 ................................ TTGCCACTCGTCGAGGGTTGGTTGCTCGTTGATA 345250 32 100.0 35 ................................ TGGCAGTGTCTCTTTTCTCAAAGGCTTGCGACCAT 345183 32 100.0 37 ................................ ATAAAAAGCGTGGGCGATTTATTATGCCAATGTATAA 345114 32 100.0 35 ................................ TCGCGAATAAACATGCTATTTACACTCCTTATTTC 345047 32 100.0 34 ................................ CATGCAGGTGATGGGGTTGGTTTAGGAACTACCT 344981 32 100.0 34 ................................ TTCAATTCGGTCGTTTAATAAGTAAATTACAGAT 344915 32 100.0 35 ................................ TATCATCAATAGCCAATTAGCTATCTTGACAGAAG 344848 32 100.0 34 ................................ AAATTTATAAAGAACTTGTTGATTAGGACACCAT 344782 32 100.0 35 ................................ AGCAAGTTTTGTTATGATAATATTTTTGAAGTTTT 344715 32 100.0 36 ................................ TACCTTAGATGTGGTACGGGAGAGTTTAACTACCTG 344647 32 100.0 34 ................................ CAATCAACGTATGCTACTTGATAACTAAACATTT 344581 32 96.9 37 ...............G................ AGCGAGGGTCAACGCTGACCTCAAGGACGGTTGCAAC 344512 32 96.9 36 ...........C.................... GAGATTATCCTCAAAAATAAGTTGGATATATGGCGA 344444 32 87.5 0 ...........C.CA...A............. | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 98.9 35 GTTGCAGTCTTTATGACTGCATGGATTGAAAT # Left flank : ATGGAGTTGATTTAATTGGTTATACGCCATGGGGTTGTATTGATATTGTTTCTGCTGGAACAGGAGAAATGAAAAAAAGATATGGTTTTATTCATGTTGACATGGATGATCAAGGAAATGGCACCTTAAAACGTACCAAGAAAAAATCTTTTGATTGGTATAAAGAAGTAATTGCAACAAACGGCGAACAGTTATAATTAACAAACAAGGGCAGAATGGAGAATAATTCTGCTCTTTGATTGTATTGTTCAGTTAATTCACAGATGTCTATGATGACTTTGTGATAAAATAAAAGAAGAAAGTATTGTGAAGATTCAATTTAGTGCGAATCCCAAGCTCCCAGAAAAACACTAGACGATTCGCACCGAAAAAAAGCTGTAAAATGAGATTATGATGAGAGAAAATACAATTATATGTGTTTTTTTGAAAAAAAACACATATAATTGGGCGAAACTCATCAGGAAAACAGAACGAATCACTGTTTTTTATACTTAATCGCC # Right flank : TCCCACCATAAAAGAACTTATTTTTACTCTTGTGGTTAGACTCTTTCATACTTGCCTAAATTAAACTGGGCGAAAAACATAATTCACATTAAAAAAATAGAGGATTCTTACTTTCATAAGAACACTCTGTTTTTTTCTTTAATCTATCCGTTTTTTTATTGGATGACGAAGGACGGTTTTTAATTTTTCTTTTGCTGTCTTACGTGGATCACTGATATAAATTTCATGATGCATGCGGTACTCGAAATTGGGTGCATAACCTTGTTCCTCTAGATATTGATTCATAATAGCTAATGTTTTAGGTTCATCATCATACGGACCAAGATGCATCATCTGTACGCAAAGCCCTTCATCATAAGTAAAGAAGAAGACGTTTGAATAATCTTGTTTTTTATGGGTAGTGGCATAGTCAATTGCCCAAGAGAAAGCTTTTTTGGTGACAAAATCAGGTAAGCGAATAACTGCAATCCATTGAAATAACTCTTTATGTTGATAATCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTCTTTATGACTGCATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 181748-183441 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLWH010000002.1 Enterococcus sp. DIV2402 scaffold1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 181748 32 100.0 34 ................................ AAAGATAGTAACGTCTACTTGAGAGACGCAGGTA 181814 32 100.0 35 ................................ ATTTGTAATCGGTGAAATATCCTCTTCATTACTAC 181881 32 100.0 34 ................................ TAAATGTATGCCCATGTTATCTTGTGTTGCTCCA 181947 32 100.0 34 ................................ TTTTTTAGCAGTAAGCATCAGGCTTAGATAAACT 182013 32 100.0 35 ................................ TGACACCCGTTTATTGACACGTTGACCAATGTAAT 182080 32 100.0 37 ................................ ATTCATAGTTTTACCGCGTTGTCAAGGGGTCATCGCG 182149 32 100.0 35 ................................ CGCCCACTGTGGCAAAGGGCTTACCATTAGCTTGT 182216 32 100.0 34 ................................ TAATTCCATTACATACAGATTCCTGTATCTTTTC 182282 32 100.0 34 ................................ ACCTCTTACTAGCCGAGCAAACCATCGACACCGA 182348 32 100.0 34 ................................ TATGCTATTTACTCTGGGTTTAAAATTACTTAAA 182414 32 100.0 33 ................................ TTTAGTCATTTCCAACAGATTTTTTCGCAATGA 182479 32 100.0 35 ................................ AGGTCTGCGGTACATAGCCAACCACCCATAATTAC 182546 32 100.0 34 ................................ CTATTTAGTAGTTTTGAACGAAACATGAAATCGA 182612 32 100.0 34 ................................ TAAATGAGCAACACAAATAACCACACAGACTGTG 182678 32 100.0 35 ................................ CTTGATTTGTAAAATCATAATTTGCAGTCAAAGGA 182745 32 100.0 36 ................................ GATGAAATCTTGTAACTCCTCGATAAGGTCGTCTGC 182813 32 100.0 34 ................................ TGGCTCCATAGCGTACGGACATTTAATAGCGTAC 182879 32 100.0 34 ................................ ATTCCAATAGGTAAACGCGCTAGGGTGAAATGAT 182945 32 100.0 38 ................................ CCCCTCAATCATGAGGGGAACCTATTCGCCATAGGGTG 183015 32 100.0 34 ................................ CTCCGGCATTTTATAGCATACGATTTTGTCATTT 183081 32 100.0 33 ................................ TACATTGTTGATACATCACTATATTGGCTTGTT 183146 32 100.0 34 ................................ GCTGATACGATTTTGAATAACGAAGTGCTGCTTG 183212 32 100.0 33 ................................ TTACATCAAAAAAGGTTAGTCGAGAATTTTTAG 183277 32 100.0 36 ................................ GGCAAGGAAGGCTTTGTTGTGTTGTGCGGTTAGTGT 183345 32 93.8 33 ..............A................G AAAAGAAGTCAAAATATATGAAGTTAGGAGTAA 183410 32 68.8 0 T.....T.T..TC.....A...AA.C.A.... | ========== ====== ====== ====== ================================ ====================================== ================== 26 32 98.6 35 GTTGCAGTCTTCATGACTGCATGGATTGAAAT # Left flank : CCCCCCATTCTTTTGGAAGTAGGTGAAAAGTCTTGCTTGTATTAGTAACGTATGATGTAAGTACCTCCAGTACTGGTGGTCAAAAACGTTTAAGAAAAGTATCTAAAGTATGCCAAAACTACGGTCAGCGTGTGCAAAATTCAGTATTCGAGTGCGTAGTTGATGCTGCACAATTTGAAATGATGAAAAACGAATTGAAAAAGTTAATTGACGAAAGTAATGATAGTTTGAGGTTTTATCGACTTGGAAATAATTATAAAACAAAGGTTGAACACATCGGTGCAAAAGAATCGTTAGATATTGAAGCACCATTGATTTTTTAGTGCGAATCGCATGCTCCCATAAATTCTCTAGAGTATTCGCACCTAAAAAAAACACCAAAATGAGAAAACGATGAGAAAATAAATGCGATTGTATTAAATTTTACAAGAAAATACATATAATCGGGCGATTTTCATCGAAAACAAGTCGATTTTGGCTTGTTTTTTCTCTTAATCGCC # Right flank : TAACAAAGAATAAAAAGATGCTTTATACTATTATAAAATAAAGAATCAGTATTAAATATTCTTAAACAATAACAATTAAGAGGTGAGACAATGATTAAACCAAAACCATTATCTAAGGGTGATACTATTGCTTTTATCACACTTTCTTCAGGAATGGCAGGAGAAGAAATATTTCAGTATCGCTGGGAAATTGCGAAAAAACGGCTAGAAGCATTAGGGTATCGAGTTGTATTAACACCTAATGCGATACAAAGTAGTGAGTATATTCATCAACATCCTGAAAAGAGAGCACAAGATTTGATGGATGCTTTACAAAATCCAGAAATTGATGCCATTATCTGTATGATTGGTGGATCAGATACTATTCGACTCTTGCCTTATATTGATTTTGAGATTATAGCAAATTATCCCAAACTGTTTGTCGGTTATTCAGATACTACCATTAATCATTTTATGTTTTATCATGCGAATGTTGCATCGATTTATGGACCAACTGCTCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTCTTCATGACTGCATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 309745-310979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLWH010000002.1 Enterococcus sp. DIV2402 scaffold1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 309745 32 100.0 34 ................................ CAAAGTTTGGGCGATATCAGTCTAAGCGATATCG 309811 32 100.0 35 ................................ CCATGTCTTACCATCCTCCATGACCTTTATTTTTT 309878 32 100.0 34 ................................ TTGAGCAGATACGTTGGGCGCTGTCATGTCTCCC 309944 32 100.0 35 ................................ AATTGGGCTGACAGAAAATTGTAGTCGTCCGGATA 310011 32 100.0 34 ................................ CATAGTTAACGTTATTTTTACCTGCTAATTTGAT 310077 32 100.0 36 ................................ TACGACATCCAGTATATTATCAAACGACATATCAAC 310145 32 100.0 34 ................................ GGGTCAGTGCTATATTTCTTCAACGTAACGGGTT 310211 32 100.0 34 ................................ CACGTTATACCCAAGTTCATCCAAGGTTCGGAGG 310277 32 100.0 34 ................................ TTTGCTATATTGATCTTGAACTAATAGTGAAGCA 310343 32 100.0 34 ................................ TACTACCGGTTGGAAAACAATATCGGACTTATGT 310409 32 100.0 35 ................................ TTATTGCCAATAGGCGGCGAAGCTTGTTTATTACC 310476 32 100.0 35 ................................ CGAATCCAGTCACCTATACCGCCTACAAAATCTTG 310543 32 100.0 34 ................................ TATAGATGCCAAAGATTTGCTATGGTTTAAGATT 310609 32 100.0 37 ................................ AGAGAATAAAGCTGAAATCAGTAATTATCAGTTATTA 310678 32 100.0 35 ................................ TCCAAGCAAACGAGACCAAACATAATTCGATGGAT 310745 32 100.0 37 ................................ CTTGGGGTCCCTGTAACCCAGCAATCCCTTGTGGACC 310814 32 100.0 34 ................................ AAGTCTTCAACGTCCTGCATTATCTCAGTTAATT 310880 32 100.0 36 ................................ CACAAGTTGAGGCATACTCACGCTACGCTTCTTTTA 310948 32 84.4 0 ........A....CA...T...A......... | ========== ====== ====== ====== ================================ ===================================== ================== 19 32 99.2 35 GTTGCAGTCTTCATGACTGCATGGATTGAAAT # Left flank : ATTTCTTGACATTTTTTGTTCAAGATGAAGACGGTCATTTTATTCGTGAAGATGAATTGCATCAAGAAAGAACGTATTCATTAGATACCTATCTAATGTTGCTAGAAAATGCTGGTTTTAGTCATGTTGAATCATATGCTGATTTCATTGATAGTGAACCGAATGAAAAAAGTCGTCGTTGGTTTTTTGTTTGCCATAAATAGTAAGAAGACTGAGGAAAAACTCAGTCTTTTTTATTTTGAAAATAGTTGTTTAAATTGAAGCGTGGTATACTTAGTTAAAGTAACTAGTAATTTTCTCAATAAGAAATTAGTGCGAATAGTAAGCTCCCATAAAATCCCTAGGAGATTCGCACCAATAAAATGAACGAAAGTGAGAAAATGATGAGAAATAAATACGATTATATCCTATTTTGCCTATTTTGAGACAAAAAATAATTATAATCGGGCGATATTCATCAAAAGTAACGCGTTTTTGTCTTATTTTTACTAACAATCGCC # Right flank : TTTTCTAAAATATTCTAGGTGATTTGTCACTAACTCGTTGCAATTGTCATAACCCTGTAGAGTAGATCTCTTACAATTTGATTAAGAAGGGTATCATGAATATTTATTTTTACTAAAAATTTTCAAAAAATAGTTCTCGTATTAGCTGTAAAATACGAGAACTGTTTTTGTTATAGATATCCTTAAAAAATAATTTTTAATAAAATAATAAAAATATGTTGACAATTAGATGAGAAGAATGTAATATTCTGATTAAATATTAAGCGGACAAAAGAAGAGTAACTTTTTTGATACTTTACAGGGAGCTGACGGAGGGTGCGAGTCAGTAAGTTAAAAAGAGTGAATGGGCTTTTGCGCTGAGGCATTGAACTGAAGTAGGTGACTCCGGGAACTCCCGTTATAGAGGAAAATCGTTGATAGACGATTGATAACGAGAATTTGAATAAAATTATTCAAATTAATTGAGGTGGCACCGTGAATTTATTCGCCCTCAGACTTAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTCTTCATGACTGCATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 326159-327525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLWH010000002.1 Enterococcus sp. DIV2402 scaffold1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 326159 32 100.0 36 ................................ GTTGCAACTCGGCTAGCACAGGGAATAGCTCAACGG 326227 32 100.0 36 ................................ AGTCAATGGGTATTGGAACAGGAGGCAGAGCGATGA 326295 32 100.0 34 ................................ GGTAAAAACGTACGTTGCGCCGTCAAAGTAATGG 326361 32 100.0 35 ................................ ACCGATTGCATCAAGAGCTGCACCTTTTGCTTTAT 326428 32 100.0 34 ................................ ATTCCACCACTTGTCAGCTTCGTATTTCCCTTCC 326494 32 100.0 37 ................................ AAAGGACGATGAAGATATAGAACAGTTGCAAAAATTA 326563 32 100.0 35 ................................ TTGCGGTTGAAACAAACAATCTTTATTTAGTACCA 326630 32 100.0 36 ................................ GCCAATACACTTACAACAAGAACAGAAGCGCAATCA 326698 32 100.0 35 ................................ TAACAAATAAGCCCGCTTGGATTTAGACTGATTCA 326765 32 100.0 34 ................................ TAGCTTTTTACCATGTCCTTCGACAATCTTTTCT 326831 32 100.0 35 ................................ ATTTCCATATTTATCTCTTGAAGCGAACCAACTTC 326898 32 100.0 33 ................................ TTTCGCAAGTACCAAATGCATAGATTTTTTAGC 326963 32 100.0 33 ................................ CATACAACCCGTAGAGGTTTTAAAACGAGACGA 327028 32 100.0 35 ................................ AATTGGATAGTGTTTCCTTGTCTGTAACTCTTGCT 327095 32 100.0 33 ................................ AGGTGTATACTCCTGCATAGCCCAACTTGCACT 327160 32 100.0 35 ................................ ATACTCTCGACAAGCAGAACCACTCATTTCTAAAT 327227 32 100.0 34 ................................ AAAGCTTCTCCCCTTTTTAAATGGGGAAACTACA 327293 32 100.0 34 ................................ CTATGCTTGTGAGGGTGTTTTTTTGTCTTCTTTT 327359 32 100.0 35 ................................ TACAAAGGAATCTTCTGTTTCTGTTGCGACATCTG 327426 32 100.0 36 ................................ TAATTTACCGCCTAATGCCAAAGTAAAAATCTCTTC 327494 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 21 32 100.0 35 GTTGCAGTCTTCATGACTGCATGGATTGAAAT # Left flank : TTTTAGCTGTTTTAGAAGATAATCCATATCATCGTTGGAATGAAACATTAGACGCTGATGTTGTGTCAAAACTAGAAGAATATTTTTTCACAGAAGATGTAGAGATGAAAATTGCAGATTTATATAGACAAATCGATCAAGCCTTAGAAAATGATAATCACGAATTGTTTCTACAATTATCCACCGAGGTTAATCAGCTATTAGAAAAGAAAGCATTAGTGACTGAATAAAAAAGATCCAAGGACAATTTTTAGTTGTTCTTGGATCTTTTTGTTCTTTTTCATGATAAAATAAAGTAATAAAAAAATAATAAGGTAATGAGTGCGAATCCTAAGCTCCCATAAATTCCCTAGGAGATTCGCACCACTAAAATGTCATTAAATGATAAAATGATGAGGAAATAAATACGATTATATTCAATTTTACCAAAAAATATATATAATTGGGCGATACTCATCAGAAAATGTGTCCTCTTCAGACCATTTTCTCCATAAATCGCC # Right flank : TAAACTATGTACACCCCACGCCTTTATCATCAGCGTGTTGCAGTCTTCCACCAGCATAAACGGTAGTTTGAAAATCAATAATAAGACTTATTTAGGGGTCATTCAAAAATTGCAACATAAAAATGTAAATGATTTTAATGAACTATGTGTATCCTATATAAATTGCTCACAGAATTTGAAGGATGAGTTAGAGTATAACAATATAAATTGTTTTATCGCTGTTGTTTATATGCTAAAATAATGATTATATTCTATACAATGAGTTGGATTAAAATAACGAGTTTGAAAAGCTTCTACTAGGTGTATGTTACAAATTTTATAAGGTGTGAACAGAAATATAGAATTAAATATTCCTGTTGTCGTTACAGTCTTCATGACTGCATGGATTGAAATACTTCTATAAATTTTTGCATACCACACCTCCTACGTTGCAGTCTTCATGATTGTATGATGAACTATGTAAATGCGATGTCTTATGTTTGTATTAAATTTTCATTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTCTTCATGACTGCATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //