Array 1 42893-43897 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJFT01000012.1 Escherichia coli strain 3167 NODE_12_length_165125_cov_101.17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42893 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 42954 29 100.0 32 ............................. TACAGCTTTTTTCGCCGCCTGATATTCAGCAG 43015 29 100.0 32 ............................. CTCTGTTGCCTTCACGGCATCGCGCAACCCTG 43076 29 100.0 32 ............................. CAAAACTGGTTTATCTCCCGCGTAGTCCGCCC 43137 29 100.0 32 ............................. TTAGCCCGGCCAGTAGATTTTGCTCGCTGCGC 43198 29 100.0 32 ............................. GGACAACATCGTAGGGGAGTTATAACGTTCAA 43259 29 100.0 32 ............................. TCGTCAATCCTATGCCTGCTCATGAGCATTAT 43320 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 43381 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 43442 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 43503 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 43564 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 43625 29 100.0 32 ............................. ACGCCAGCGGTGGCGTTACTGAAATCCTCGGT 43686 29 100.0 32 ............................. CCGCCGGTTACTGCCCCGGCGTTCACTGCCGA 43747 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 43808 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 43869 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATGAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69598-70724 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJFT01000012.1 Escherichia coli strain 3167 NODE_12_length_165125_cov_101.17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69598 29 100.0 32 ............................. GAAATATAGCGTTAAATAGTCAGGTGACAGAA 69659 29 100.0 32 ............................. CCCCGCGCCGCGCATCGGGTACGTGTAGTCAT 69720 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 69781 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 69842 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 69903 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 69964 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 70025 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 70086 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 70147 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 70208 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 70269 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 70330 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 70391 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 70452 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 70513 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 70574 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 70635 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 70696 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //