Array 1 6218-8301 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYRF01000053.1 Listeria monocytogenes strain CDPHFDLB-F15M04169-E005 F15M04169-E005_Contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6218 35 97.2 0 ...................................- - Deletion [6252] 6253 31 83.3 0 C..............................----- - Deletion [6279] 6284 36 100.0 30 .................................... GTATTGACGAATACTACCGTAGAAGTATTC 6350 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 6416 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 6482 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 6548 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 6614 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 6681 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 6747 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 6813 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 6879 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 6945 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 7011 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 7077 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 7143 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 7209 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 7275 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 7341 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 7407 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 7473 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 7539 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 7605 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 7671 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 7737 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 7804 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 7870 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 7936 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 8002 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 8068 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 8134 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 8200 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 8266 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 33 36 98.6 28 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 54005-54553 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYRF01000006.1 Listeria monocytogenes strain CDPHFDLB-F15M04169-E005 F15M04169-E005_Contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 54005 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 54070 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 54135 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 54199 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 54265 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 54329 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 54393 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 54459 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [54482] 54525 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 94.6 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //