Array 1 8946-10609 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXSZ01000005.1 Salmonella enterica subsp. enterica serovar Heidelberg strain NCTR-SF606 NODE_5_length_90894_cov_5.61936, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8946 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 9007 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 9068 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 9129 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 9196 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 9257 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 9318 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 9379 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 9440 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 9501 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 9562 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9623 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9684 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9745 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9806 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 9867 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9928 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 9989 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 10050 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10153 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10214 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10275 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10336 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10397 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10458 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10519 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10580 29 96.6 0 A............................ | A [10606] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5343-4217 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXSZ01000154.1 Salmonella enterica subsp. enterica serovar Heidelberg strain NCTR-SF606 NODE_154_length_6701_cov_4.58512, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5342 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 5281 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5220 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5159 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5098 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5037 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 4976 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 4915 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 4854 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 4793 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 4732 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 4671 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 4610 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 4549 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 4488 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 4427 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 4366 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 4305 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 4244 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //