Array 1 510403-512025 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJH01000003.1 Listeria monocytogenes strain FSL L7-0421 NODE_3_length_517396_cov_21.869840, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 510403 36 100.0 30 .................................... ATAAAGCAGTTGTAAAAGCTACTGAACGAT 510469 36 100.0 30 .................................... ATGACGTTTTCGCTTACAGTCATCATGGCA 510535 36 100.0 30 .................................... AACGAACAAATTAGCTTTACTAACCAAATT 510601 36 100.0 30 .................................... TTTCCCGGCAGTCGTCGTTACAATTAACAA 510667 36 100.0 30 .................................... TATCTTAGTAGAAAATTGGAAAACTACAGA 510733 36 100.0 30 .................................... CTTCTTTCATGTTTCAGTTGACTACTTACT 510799 36 100.0 30 .................................... GGAACACTTTATCTATTTCAGATATTTTTA 510865 36 100.0 30 .................................... AACTGCTACATCGCTCAATAGCGGGTTAGT 510931 36 100.0 30 .................................... TCAAACAAGGTCATTGGCTGCATATAGGCA 510997 36 100.0 30 .................................... ATTGTTGTCTGCGAGCGCCGTTGTGGTAGG 511063 36 100.0 30 .................................... TAATTCTTCACATTGATACAAATACATAGA 511129 36 100.0 30 .................................... TAATTGCCGCAAAAGAGAACGAAGCCGAGT 511195 36 100.0 30 .................................... TAGTTTTATGATGACTGCAAAAGATGCAGC 511261 36 100.0 30 .................................... ATTTGCAGCCCGACTGTCCTTCGTGCGCCA 511327 36 100.0 30 .................................... AACAGCAAACTGCCAATATATGTTGCCTCC 511393 36 100.0 30 .................................... CGGATCATACGGAACAGCTATAACGCAAGA 511459 36 100.0 30 .................................... TTGATAGATATTGAGTCGTTCAAAAGTCTT 511525 36 100.0 30 .................................... TGACGATGGGTCTGATAACACTGAAGAGCA 511591 36 100.0 30 .................................... AACAGGAAAAGAAAGATATGTGCGTGTTCA 511657 36 100.0 30 .................................... ATCGGATTTAGCTTATGAGATGACAGATAT 511723 36 100.0 30 .................................... TCGAGAATGTAAGCAATATTGAAACAACGT 511789 36 100.0 30 .................................... TTTGTTGTCATACCAAGCTAGTTTAACACC 511855 36 97.2 30 .........................A.......... CCTTTGATATTTATTTCAACACACATGAAG 511921 36 100.0 30 .................................... CGAAAGTGATTTTGGTATCTCTGACAGTGG 511987 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [512012,512018,512021] ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGACACGATTAAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAAAAATGAAAACCGATATAACTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 566443-565315 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJH01000001.1 Listeria monocytogenes strain FSL L7-0421 NODE_1_length_737627_cov_16.408288, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 566442 29 100.0 35 ............................. GACAATGCATTTTCATAGCAACAACAAACGATAAC 566378 29 100.0 36 ............................. ACGGTTGAATTTGCTCCGTGCAGATTGTCATTTTGT 566313 29 100.0 36 ............................. TTGTTTATTTCCAACAAAAAAACACTTGCCGTTTTG 566248 29 100.0 35 ............................. AAGGAACTGTGCTTGTAGAATGCGGGCATCTCTTA 566184 29 100.0 36 ............................. GAATTCAGTCGCGTGTTATCCCAGACCGGAATACGT 566119 29 100.0 35 ............................. ATAGTTCCGGATTCACTTCCAAAATAGTTGATTCG 566055 29 100.0 36 ............................. AATTTTACATATCTAGCAATTAGCGGTTGAGTAGCA 565990 29 100.0 36 ............................. AGAATTTATAGTCAAGCAATTCACTGAGGGCTCAGT 565925 29 100.0 36 ............................. TTTTCCATCATTATCGCCCGCCAAGATAATTCGCTC 565860 29 100.0 35 ............................. CGCTATTTATTCCTTGAAAACGTTAAAGGGTTACT 565796 29 100.0 36 ............................. AAGGCAGATTTCAAAACAACGCCTGTGCAGATGTAC 565731 29 100.0 37 ............................. CTGCTTGCTAAGCCTCTAAATGCCATTACCAAACCAG 565665 29 100.0 35 ............................. GAATATGCCTCAATAAATTTTCCAACTTCGAGAAT 565601 29 100.0 34 ............................. GAGTTAGTTGGCCAGAACTGTATAGGAGCGGTAG 565538 29 100.0 36 ............................. CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 565473 29 96.6 36 ..............A.............. ATACCTTTTGCAACTTTAAGCAACCGTGATTGGAGT 565408 29 93.1 37 ..C...........A.............. AATCGTCACGATGTGAAAGTCATTGATAGCGCGCCAC 565342 28 79.3 0 A.....A........CA.-....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 18 29 98.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCTACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGCGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CCCCTTCATATACAACTCCACCACCATCCATCAAAATCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCAAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //