Array 1 8954-7338 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTC01000081.1 Salmonella enterica subsp. enterica serovar Infantis strain inss19 scaffold_80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8953 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 8891 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 8830 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 8769 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 8708 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 8647 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 8586 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 8525 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 8464 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 8403 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 8342 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 8281 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 8220 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 8159 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 8098 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 8037 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 7976 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 7915 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 7853 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 7792 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 7731 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 7670 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 7609 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 7548 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 7487 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 7426 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 7365 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59673-57775 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTC01000026.1 Salmonella enterica subsp. enterica serovar Infantis strain inss19 scaffold_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 59672 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 59611 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 59550 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 59489 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 59427 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 59366 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 59305 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 59244 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 59183 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 59122 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 59061 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 59000 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 58939 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 58878 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 58817 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 58756 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 58695 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 58634 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 58573 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 58512 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 58454 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 58393 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 58332 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 58271 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 58210 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 58149 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 58088 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 58027 29 100.0 11 ............................. CGGCCAGCCAT Deletion [57988] 57987 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 57926 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 57865 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 57804 29 93.1 0 A...........T................ | A [57777] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //