Array 1 4566-5897 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQZ01000281.1 Leptospira kirschneri serovar Grippotyphosa str. UT130 contig_281, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 4566 37 100.0 33 ..................................... AACGCTGGAAGAGCGTGAACGTAAACAGCACGA 4636 37 100.0 37 ..................................... ATGAAATCTGAATGTGTTTCAGTTGAACCTATATTAA 4710 37 100.0 36 ..................................... AATGTTGTTAACGGATTCGGACTGACAGACGGAGAG 4783 37 100.0 34 ..................................... TCTTTCGATTTTAGTATCCATCTCTTTTAAAAAT 4854 37 100.0 35 ..................................... CATAAAATACTTTACTTTCATTTTCATTGAATTTG 4926 37 100.0 34 ..................................... ACTGTGAGGATTTGCTTTATCAAAAAAATCTCCA 4997 37 100.0 36 ..................................... TGGTCTTAATTTCTTATCAGATGCATCTTTAACAAT 5070 37 100.0 33 ..................................... TCTATCCAACGTAACACAAATCCGTCTACCAAC 5140 37 100.0 34 ..................................... ATTTTATTCAGTTAATGGATAGGTATTAAATGGA 5211 37 100.0 35 ..................................... TTATCGATTATTGCAATGTCTTCAAAGACAGTTTG 5283 37 100.0 33 ..................................... TCGGTCCGCATTGTCAAAAAACACAGTTGTAAA 5353 37 100.0 37 ..................................... TCGATCTAAGAATTTGTCCTCGGACGATGTCATTTAG 5427 37 100.0 35 ..................................... CGGAAATCTCAATAACCAAGAAACGACAGTGCTGT 5499 37 100.0 35 ..................................... AGAGTGAAAAGGTAAGTATTTAAATGCTGGCATAT 5571 37 100.0 34 ..................................... CAAACGTATTAAAGATCTTAGTCTGCATCTCATT 5642 37 97.3 34 ...................T................. AAAGGAAGAATAGAAGGATTTGTATCTGTGTCGT 5713 37 100.0 34 ..................................... AGATACAAGGTCGACTCCGTATGCGGTTGAAATA 5784 37 100.0 34 ..................................... CCGCAATCGTTCCGCGGACAACGTCGTAAGACAT 5855 37 94.6 0 ..........................A........G. | AA,ACAA [5881,5886] ========== ====== ====== ====== ===================================== ===================================== ================== 19 37 99.6 35 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : ACACAAAAAGGATCGATGCGATAGGAACTTTAGCAAAACACTCTTTCAAACTAAAACGTCTCACTGTTCGACAGATTCACATACTACATTGGATTATACAGAATTCTCCTAACCGACGCTTTATAACAACATTTACCGAGGTTCAATTTTATGGGATGAGTAAAACATATAATATAGCAACAAACATAATTCAAAATACGAAACACAGCGGTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCCTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTCTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCTACCTATCAAGCCGCT # Right flank : CCAATCTAGAATAAAGTTGTTGAAAAATGAATTCTTGATCTGTTTCTATTTCATGGAANNNNNNAATTGAAATAGTTTTGTTAAACGCCACTATGGAATTTTTTTCAACAACTATAATTCTGAAAAAAGTTGGGATCTGGACTTTGTAGATCGATTCTTTAAATGTGGAACTACTGCAAAATTTCGTTCGGAAAAGTATGATTTAAAATCGCAAAAAAGATAAAAAGAGACGTAATCCGTAGGAACTACCACAATTTAAAAAATAGAAGTTTATAACTTATCGTATTCAAGTGTGGAACTACTGGTAAATCCACGATTTGTATGAGTTCCCACATTTTTGAGACCAGAAATAGGAAAGGTTTAGTTTCTATCCTCTGGACGCTAAATCGATACGAGGGAACTTTAGCAGAACGTTCTCTCAAATAAAAGACGAGATATTGTATTAGGTTTCTTTTATGAAATTTATTGACTGGAGCCAAAAGCGCGGTCCTGCAAAGCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 2052-1443 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQZ01000288.1 Leptospira kirschneri serovar Grippotyphosa str. UT130 contig_288, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2051 37 100.0 35 ..................................... AACTCCTCAAAAGTCGCACAACTCGCACAGATTAA 1979 37 100.0 35 ..................................... TCGGAAGTTTTCTCCGTATAACTTTTGTCCAAAAG 1907 37 100.0 34 ..................................... TTCTCCAGTTTTTAATCGGAAATAAATAGAAAGT 1836 37 100.0 35 ..................................... CCCTTGAACTCAATCTCAACCCGTATCCAGCTCCC 1764 37 100.0 33 ..................................... GTTTTTGTGAGACTCATTGAGCCTTCTTATCTC 1694 37 100.0 36 ..................................... GATCTCCTTGCTGCAAATAAGCGTGTTCGTGAATTA 1621 37 100.0 34 ..................................... TTGGTGAAAAGGGTCGGTGGAAGACGACGATATT 1550 37 100.0 33 ..................................... CTCACGTTTACGGATTTAGAATCAGATTGGGAA 1480 36 78.4 0 ..........A..G...G..G....C....A.-...G | TT [1452] ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 97.6 34 GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Left flank : TTATAGAGAATTTTACTAGGTTGTTTCAAAACTAAAAACTTCGCGAATGTTTACCGACGAGTCAGTCTATTTTGCTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGGCCTAAAAAACATTTTTTTAAAATTTTGATTTGAGATAATTTCTAAAGAATTCTTCCGTTTCTTTTCCGAAAATTTCAGTTAGGTGAACATTGACTCATTTATAGTTTTAAATCTATTTTTCCTGGAATCCTATTATAAGTTTTTGCCTTTGATTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATCAATTGTGGATCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATGGAATAGATTGGCTTAACAATTGTACAGTATGGTAAAAATAGGTTCGCGATTATTATGTCTAGAAAGCTTAATAAAGTATTTTATAATACATTATTTTCAGTCCTATCAAGCCGCT # Right flank : TGTCTAAAATTTTGTTCCTGAAACGGAGATACTTTTCAAAAGTTATGATACTCTAATATATGAGAAATGACTAATCGATAGGAATTGATTGCTCGGAACAATAATTTCTAAGTTTTGTGAGAGCTCCCACAATTTTAAAAAATTGGAATGTTTTGTATATCAAACACTACAGGTTTTTATTTAACATAAATTCGAAATAATAGAAATTAGGAAAAATCTATTCTAAAAATAGGAGTTCCTTTTTATTTTTACGGACCAAAGTTTCTCTTTCGGAGAATATCTGGTTTGGTAAATTCTACCATGAAAATTGAGTATTCGTGGTGGTAGTTCCCACAAATTAAGTCTTTTTGTGAATGTATAGGTTTTAAATGCATTTTAACGTGAGTTCGACGTCATAAAATCGGGGCGAATCCCGCTGCGCTTTCCGCTATAGTTAATAAATTGTATAAAAAAACATAATATGATATTTCGTCTTAAGTTACAATTGATTATAGAACCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 50382-49606 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQZ01000218.1 Leptospira kirschneri serovar Grippotyphosa str. UT130 contig_218, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 50381 37 100.0 33 ..................................... TTTTTCAAACGCCTGATGAACCGTCATCTTATC 50311 37 100.0 35 ..................................... TTTAAGAAATTCGCTTCGTCTATCATTGATCGTCT 50239 37 100.0 34 ..................................... CGAAACGTTAGAATTCAAACGGGAAATTTTAAAT 50168 37 100.0 34 ..................................... TGGCTCCGAACCTCCTTGCGCTTTTTGAGCATTA 50097 37 100.0 34 ..................................... AAACAAGACTTCGTTCGTTTGTGGGTTTAAAATA 50026 37 100.0 34 ..................................... AAATTTACCCTGAACACAAAGCATAGGAGGAAGT 49955 37 97.3 35 .....................A............... GTTAAAACTTAAATCGCACTCCTCTATTATACGAT 49883 37 100.0 34 ..................................... TTCTATCTCCGTATTTGGATCCAACGTAACAACA 49812 37 100.0 134 ..................................... TTTGTGGGCGGTCTTACGACCATATTTGCCTACTCCATTAGAATGGAAACGACAAGCTATGTGACATATTTAACTAATTTTAATTTTTTCTTTTTAGCAAATTGAATCTTCTTTGCGATCGTTTTTGATGCGAC 49641 36 70.3 0 C......T..C.A.CG....-.A....AAG....... | ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 10 37 96.8 45 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : ATTCTACTTCGATAAGCATATATTCTGAAATACAATCCATTTAGAACTTCTATATTTTTAGAATATTCCATTATTTACTTATAAGCCCTACAAATTTTTAGAAACAGATTCAGTTTAGACAAAATTCTGTACGCTCTGATTCTATGGTTTCTGAGTGAGTTAAGTTTTCAAGTCCAGCGCTTGGACAATCGTCTCAACAAGAATGAAAGAACCCTTGAATTAAATTTCAAAATCGATCTTTTTAGTCACAAACTGAACAATCCGGAATTCAATATTCTTGACTTTAAAACCTGGGTCATTTTATGATGAGTCGCTTTTTGCGAACCTGTTTCTCCCGATCTTTTGCAGCCCTTTCGCGTTTCAATAGACGGTCGCCATTTGTCGATTGAATGGGTTTTGCTCAGCAATTACAGTATGTTACGATTAGGTTCGCAATTATTATGTCTAGAAAAGGTAATAAAGTTTTTTCTAATTCATAAATTGAGACTTTTCTAACCGCT # Right flank : TACCACGGTCTTACGACCATATTTCTTACTTTGTTCGCAATGGATGGAAATCGGCATTAAAATGCCGATTGACTTACAAGTAATAATTTAACGTGAATTCGTCGTAAGAGATTGTTTGATAAAAACCTGATTTTTCCATAAAAAATCAATGTTTAAAAATTTGTAATGCGACTTGAGACGCAGAAATTCCCAAAAATCAAGTCGGCCTGGATTATTTAACTTTTTGCGGTAAATCCTACATTCTCAGTTTTTTACAAACTAGAATTTGACGTTACGCGAAATGGATCAACGCGGGGAACTTTAACAGAACGCTCTTTCAAACCAAAGCGTCTCACTTACTGAATGCCGATCTTTAGAGAATCATTCGCTGAGTTTTCTGGATCGTTAGACGGTATCGTGTTCTATAATCAGGTGAATTAGCGCGAAAGGGATCGATGCGGGGTTAATAAATTGCGACTTAAGACGATATGTTGCATTACATTTCCTGCATGCAATTTATT # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:-1.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 1-164 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQZ01000380.1 Leptospira kirschneri serovar Grippotyphosa str. UT130 contig_380, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 1 20 83.3 46 ----.................... TCTTTCGATATTTCCGCTTTGTTATTATTTACTGTTTCTTCCTTTG 67 24 100.0 50 ........................ TTACACTGGTGGAAATATCCCTGATTTTCAGCAGCAAGTTTCTTCCTTTG 141 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 3 24 94.4 48 TTCGCAAAGGAAGCGGATTGAAAC # Left flank : | # Right flank : CAGGTCAAGCGAATCACCAAACTTCTTTTTGATTTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTTCTTTAACGTGAATTCGATGTAATCAATGTAAAAACAATTGAGGCGAGAACTCAGTGTTTCATAGACAGGCCTTTGTTTAGATCACGCTCTAAACTCAAACCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTTAACATTCTAAATTTCAAATGAAAGTATGAAATTTTCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGCGCTACATTCCATTTTTTTAAAAAACGAACCTTTATAAAATTACAAATTTTAGCTACGCACATTCCACATAACGACCGTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAATATAAAATATTTTTTTTCCTCCGTTGGA # Questionable array : NO Score: 4.87 # Score Detail : 1:0, 2:0, 3:3, 4:0.72, 5:0, 6:0.25, 7:-0.19, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 2464-1153 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQZ01000020.1 Leptospira kirschneri serovar Grippotyphosa str. UT130 contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2463 37 100.0 35 ..................................... CATGTGGTCGTTTAGGAGTTTCCGAATTGATTTTT 2391 37 100.0 34 ..................................... ATCCGTTGCGCCGTTATTGAGTGATGTTCGTAAT 2320 37 100.0 33 ..................................... TTCAAAGCATTTTTTGATTTTGGAGCCATGAGC 2250 37 100.0 34 ..................................... TTTGTCCCGCTTCTTTTTCGTATGCAGTTCGAAA 2179 37 100.0 36 ..................................... TCTTGACCGCATTCTATTAGAAGTTTTGAATCTAGT 2106 37 100.0 33 ..................................... TTTTGTGCGGCTTTGGTTGCTGCTACTGTTTGG 2036 37 100.0 34 ..................................... TTCATTAAGAAGAACTTTAGGATTATCAAACCAA 1965 37 100.0 34 ..................................... TGTTATAATCTTCCATTTCACCAAGATAATAAAT 1894 37 100.0 35 ..................................... AGCGTTAGCCGCCTGAAATATTTAATCTATAACAA 1822 37 100.0 36 ..................................... TATAATCTTCTATACAATAGTTCCCCTCTCTCACAT 1749 37 100.0 35 ..................................... ATTGCTAACTCGTGGAGTTCCGTTGGCACCGTTTG 1677 37 100.0 34 ..................................... TTGTGGCATCAAGAGAGCGGGAACTGAGTCCTTT 1606 37 100.0 34 ..................................... CGCGTTTCGCCCGCACAAACTCTCGAATGTATTC 1535 37 100.0 35 ..................................... TTTTTCCGACAGCCCTTTTTTATACTGAAATTTAT 1463 37 100.0 34 ..................................... AGCGGGTCCGGATGGATCGGCTAACACAGAAATC 1392 37 97.3 36 ...................................G. AAATCCGGAATTGGAGTAAAGGGCTTTCACTCTCTG 1319 37 100.0 36 ..................................... TCTCCTTAGCGGTTTGAAATGCTCTTCGATCCACAA 1246 37 78.4 17 ..................CT.....T.TT....GG.T CGATTTCTAAGACATGC G,TC [1209,1217] Deletion [1193] 1189 36 73.0 0 ........T...A...G.C.T.-.GT.C....T.... | G [1156] ========== ====== ====== ====== ===================================== ==================================== ================== 19 37 97.3 34 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : TATTCAGAACCATACAATCAATTTCCCAGCATTTTATTTTTAAACAGGGTTTTGCAGTAAAACTTACAGCTCTCAATTTTTTAGAACTAAAGCAGAATGCTCTTTATGGATTGGGTTCTTTTTATATAGTCATAAAGTAAGAGAAAATTTCCATACTCTATAAAATGAGTTTTTGAGACCGAATTTTTACTAAACGTTTAAATCAATCTTCTGAAAATTCATTCCTAGATATTCATCTACTTAGGCTTAAAACTAAAAAGTTTATAGTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATGAAGCGCTTTTTGCGAACCTGTTTCTCCCGATCAATTGCGGCCCATTCGCGCTCAAACGAATAGCCACCGCTTAGCGGTTGAACAGCTTTGCTTAACATTTATACAGTATGGCGTCAGTAGGTTCGCAATAATTATGTCTAGAAAAACTAATAAATCTTTTCCTAATACATCAATTAGAGCCTGTGCAGCCGCT # Right flank : TTTCTGAATTTATTTATAAAAATCACAGGTTGAATAAATTCCGATATTCAGCTTTTTATGATAAATTTCAGGTTTATAAAATGAATTGATTCAATCCAAGTTCTTTAAAACTACAGCAAATCTTTATTTAAGGAAAGGATACAAAAGACCGAAAGCGGCAAAATCTCTAGACTTTCTTCTTCTTGGAAAACAATTGTTAATTAATTTTTTAGATAATTATAATATACTTGATTAGAATTTCTAAAAATTTTTATTTTACCGCTCTATAATCAAAACGTACCACAACTCAATTTTCTCCAGTTAACTTACAGGTGTCTCAAAACCAAATCGCACTTTATCAGAAAGATCAAGCTGGATAACGAAAGTGCCTCACTTCCATTGGCGCTCGACAAATTCTTATTATATTAAATTACGTTATCGCAAGGTTTTATTCTTTACCTTGAAAAAAGAATTTAAAATAAACGAACATGAAATTTTTTATCAGTTCCGAAATCGACGGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 56-519 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQZ01000314.1 Leptospira kirschneri serovar Grippotyphosa str. UT130 contig_314, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 56 37 100.0 34 ..................................... CGCCTTTTCGCTTAACCAGCTCCGAAGAATTTGT 127 37 100.0 33 ..................................... TTCATAAACAACAACAATCCACCAATAGCAACC 197 37 100.0 35 ..................................... GATTCCTAAATCCGTTTAACACAATACTCAATATA 269 37 97.3 34 ...................T................. TTTGATTTTTATCAATGCCTTCATACAAACACCT 340 37 100.0 36 ..................................... GGTTTCATCGCGGCCCTACGCTCGCCTTCGTCGTAA 413 37 97.3 33 ...................T................. TACAATGTTCGCAAATCATTTCAGTTGATTTAA 483 37 78.4 0 ..........................AAAGAAC..G. | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 96.1 34 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : AAGGAGAGTGGATTGAAACTGAAACTATTACATTTGTAAACGTTTATGAAAAAACG # Right flank : CCAAAGCCAATCCAGATTGTATTCAATTCCGACAGAACCCAATTTATTTCAGTTTGAATTCTCTATGACAAAATAGCGCCCCTTCTGAACTTGAAAAGAGCGAGTTCGGCCGAGAAAAAATTCTCTAAAAGTATGATATCAGAATTTGTTCGTAAAACCGCGATTCGTGGTAGTTCCCACATTTTAGGAATCGATATGTAAAGTTCAGATTTCAACTTTTTTCAGAAAAATGAATCATGTTCAAACTCACGTTAGTATAAAATCAATTTTAAGGTAGATCCCCACTTTGTAACATGAACAAAAAAGTGTACTCAGACACATGAAAATAATACGATTCTAATATTTATCTCAAAACTTAAAATGTGGGAACTAACACAAATTATAAGAGCTTTTACACTTTCACAAATAATACACTGCTCATTTTTGATGCCATTTTCATAATAATTTAACATGGGTTTGGCGTAAAAGATTCATTTTATAAAAACCTAATCTTTCTATAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : GTTCTTTCTCTTCTTTAAATGGAGAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 3492-5891 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQZ01000091.1 Leptospira kirschneri serovar Grippotyphosa str. UT130 contig_91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3492 37 100.0 35 ..................................... TCTAGTTTAACAATTTGTGCAAGGGTCGGGTTTGT 3564 37 100.0 35 ..................................... TGATCAGACATTCGGAAGAATGCGAGTTCAATCAC 3636 37 100.0 33 ..................................... TGTTTTATTTGAAATTAAAAATTTTGATAATTT 3706 37 100.0 35 ..................................... ATTTTAAATGTCGAACTACAATTGTCATGTTTGTG 3778 37 100.0 36 ..................................... TTATCTTACTTCAGGAACAGGAGATTATATATTTGA 3851 37 100.0 34 ..................................... CGGTTCACAACGCAGTAAAAGTTGGAGATTATTT 3922 37 100.0 36 ..................................... TTCTTGAGTAGGTTTGAATCCAAAACTTTCTGCATA 3995 37 100.0 34 ..................................... TATTTTGGGTGCGCGCAATGTCGTGATGTTGGAA 4066 37 100.0 35 ..................................... TTCAATATAAACGAAATACTCCATTACGTCCGGAT 4138 37 100.0 33 ..................................... ATATTTGGCAATCGCTTGGGTCAGTTCCCCTAA 4208 37 100.0 34 ..................................... CCTACAAAAGGGATTTGAATGTAGTTTCGATCAT 4279 37 100.0 34 ..................................... ATTTATCCTAGTAAGGAATTTTACAACCTAGTTG 4350 37 100.0 35 ..................................... TTTTTGAGATTTTTTATTATCTCGTGTGATTCTTG 4422 37 100.0 34 ..................................... TGGTTGTCGTCTAAAATCACTCGTTATACAGGAC 4493 37 100.0 34 ..................................... TTCTTCAGGTTTAGCTGAAGCTTTTGCAGCTTGT 4564 37 100.0 33 ..................................... AAAAGACCAGCAGCAGCATGACGAACGAACAAT 4634 37 97.3 34 ................G.................... ATCCTAACGGTAATAATGATTCTAACATTAAATT 4705 37 97.3 34 ................G.................... TCTGGAATCAATTGATATGCGTAAACTCCCAATA 4776 37 97.3 35 ................G.................... AATATATCCTAATATTAAATTGTCCGGATTAAAAA 4848 37 97.3 35 ................G.................... GCATGAATCAATATATACGACTTAAATCGACTAAT 4920 37 97.3 34 ................G.................... TATTTGTGCAATTATTCGCGAAGTGAATTTCGGA 4991 37 97.3 34 ................G.................... ATTCTGAAAATGTTAGCTTACTGAAAGAGAAATC 5062 37 100.0 36 ..................................... CCAGAGTAAGCCAGGCTTTTGCCAAATATTGACGTT 5135 37 100.0 35 ..................................... CTTGCCGCCGCGTCTCAGATGCACGGAAACGAATA 5207 37 100.0 36 ..................................... TGAGTCGGATGCAGAGGCCGAAGGAATCCAGTTTAT 5280 37 100.0 35 ..................................... TAAAAGTATTCCATACGCAAGTCGGTTTAACGAAT 5352 37 97.3 33 ......................A.............. TGTACAGTATCGACCACCCTGTTAAAAGAAAAT 5422 37 100.0 35 ..................................... GATTTGTATAACTTTGTCCGAGCACTTCCGTATTA 5494 37 100.0 35 ..................................... TTGTGCCTTACTTTGATTCTCCGGCAAAATAAAAC 5566 37 97.3 33 ................G.................... AGTAATAGATTCGATCATGTGCAACCTTCCTTA 5636 37 100.0 34 ..................................... TCGATGATGGGCCTATGATCATTCTCTTGGTCTC 5707 37 97.3 38 ................G.................... ACGTCTCCGTCGCACCCCAAGGTATTAAAGCGAAGAGG 5782 37 97.3 35 ................G.................... GAGCTCGGCGTAGTGATCACTCTACGTGACTTAGC A [5805] 5855 36 86.5 0 ...........................T.-.CA...A | G [5880] ========== ====== ====== ====== ===================================== ====================================== ================== 34 37 98.8 35 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTGGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATTTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAGGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATCCTTTTCGGCCGGTTCGCGTTTAAACGTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCCAGAAAGCTCAATAGAGCTTTTTCTAATCCATAAACTTGCACCTTTTCGGCCGCT # Right flank : AAACGATTTATTTAAAAAAAAATTTTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCTCTTAAAGAGAAATTCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTTAATAAACCATTGTTAAACTTTACAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTCCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTAAGTACCGTTAATTTTATCGCAAAACACTGATTCCATGCAAAATATTAGGTACTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGANNNATTAATTCTCCATCTGTTTTCTATTTCATAGAAAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //