Array 1 42168-41540 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE376148.1 Streptococcus agalactiae MC628 Contig23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42167 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 42101 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 42035 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTT 41969 36 100.0 29 .................................... CCCCAAAGTTATCAAAGAAGATGACCATT 41904 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 41838 36 100.0 30 .................................... ACTATAAGTATTTTGTTTTATCCCTAGTAT 41772 36 100.0 30 .................................... ATTACTTTCAAGATGTCTATGACTATATGC 41706 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 41640 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 41575 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.2 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAACGATTTGCACAATAATCCAGGACAATTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAACACAGCTTCCTCGAAAGGGATATATCTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTATCTACGAGACGAAAACAATTGCCAATGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGCTGTTTCGAATGGTTCCAAAACAATAGGCTTAGGCGCATCTGGTTCTTTACT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 42557-42323 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE376148.1 Streptococcus agalactiae MC628 Contig23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42556 36 86.1 30 NNNNN............................... AACGATTTGCACAATAATCCAGGACAATTT 42490 36 100.0 30 .................................... AACACAGCTTCCTCGAAAGGGATATATCTT 42424 36 100.0 30 .................................... TATCTACGAGACGAAAACAATTGCCAATGT 42358 36 86.1 0 ...............................NNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.1 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TGTTTCGAATGGTTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGTGCTGTTTCGAATGGTTCCAAAACATTTCTCGCAACTCATTGTTTTCTTTTCTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCCTCGCCGTCGACATAACCAGCCATTTCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAATATTGAAATAGTTTGTGCAGATGGATTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTGGACTGATATGGTCGGAACAGTCGTTGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGCTGTTTCGAATGGTTCCAAAACAATAGGCTTAGGCGCATCTGGTTCTTTACTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGTTATCAATGCTATATGGTTTCTCATCTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTTTATAAGTGATAGAGTGTGCAACACCGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTACTTGACGAATTGAAGATGACGGAATTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCCCCAAAGTTATCAAAGAAGATGACCATTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGGTTATACATTTACTAATCCATCAGCATTGTTTTAGAGCTGTGCT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 42947-42713 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE376148.1 Streptococcus agalactiae MC628 Contig23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42946 36 77.8 30 NNNNNNNN............................ ATTTCTCGCAACTCATTGTTTTCTTTTCTT 42880 36 100.0 30 .................................... TCCTCGCCGTCGACATAACCAGCCATTTCT 42814 36 100.0 30 .................................... AATATTGAAATAGTTTGTGCAGATGGATTT 42748 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 94.5 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGATGTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATACTTAATAAAATAAATTTCTTTTGTAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTGGACTGATATGGTCGGAACAGTCGTTGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAACGATTTGCACAATAATCCAGGACAATTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAACACAGCTTCCTCGAAAGGGATATATCTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTATCTACGAGACGAAAACAATTGCCAATGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGCTGTTTC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //