Array 1 250872-248586 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQEI01000002.1 Neisseria lactamica strain M37177 M37177_CHA4079A26_cleaned_ctg_1111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 250871 32 100.0 33 ................................ TGGGGTAATAAAACCGTGTTCGATGTCGGTTAA 250806 32 100.0 34 ................................ ACCGTGTTTGGATGTACCGTGCTATTAATAAAAT 250740 32 100.0 34 ................................ ATTTATTAAAAATGGAATTAAATAAAGGTATTAC 250674 32 100.0 33 ................................ AAGAATGTGATGAATATATTGCATCAAATTTGG 250609 32 100.0 34 ................................ ATCCATAAGAGACCTAGGGGCGACATTATGCGTG 250543 32 100.0 34 ................................ CTGCACCTACAACCCCCGAACGAAGCGATACCAG 250477 32 100.0 35 ................................ TCGGCGTTGCACCGCGTGATTGACGAGCTGATTAC 250410 32 100.0 33 ................................ TATGTTTCACATTATAAGCCCTTTTGCGTAAAG 250345 32 100.0 36 ................................ TTGGCTGCTGCCCACGCCCGAGGATTTGCTGAAACC 250277 32 100.0 34 ................................ CACATCATCAGACACCGCAGACGGCACAGCCGCG 250211 32 100.0 33 ................................ CATAAAAGCCCCTAGAATGCGCCGGGATTGCAT 250146 32 100.0 35 ................................ TATGCTTCGCATTATAAGCCCTTTTGTGTAAAGAA 250079 32 100.0 33 ................................ ACGAAGTTGGGTAAAGAAAAGTACATCGTCTAC 250014 32 100.0 33 ................................ ACGAAGTTGGGTAAAGAAAAGTACATCGTCTAC 249949 32 100.0 34 ................................ AATGCTCTTTTCGATTGCCTGTTGGCAAGCTGCC 249883 32 100.0 35 ................................ AAGACAATCAGTTATGAGATTACCGACCCGAATAC 249816 32 100.0 34 ................................ TTGCCCATATTCAAAATACTGCCGCCAAGTTTCA 249750 32 100.0 34 ................................ GCCAAAGCCTTGCGCCCCTGAGTATCCAAGCCGT 249684 32 100.0 34 ................................ TGTGCTCTCTTTGTTGCCCTCCAGTAGCTCGATG 249618 32 100.0 33 ................................ CCTGCGGCAATGGCAAAGCAGGAAATCTTCCGT 249553 32 100.0 34 ................................ CGCAAACTCCACATCCAAAGGCTTGCCCGTCCGC 249487 32 100.0 34 ................................ TCCTGATGCGCGGGCTGAGGCGGATTTTGCTCGG 249421 32 100.0 34 ................................ TAAAAATCAAGGATTGCTTATGCCTGATGAAAAA 249355 32 100.0 33 ................................ TGCCTGAAAGACGTTGCCGAAATTCTGGAAATT 249290 32 100.0 35 ................................ CACGAGCAGTCGACCAACCTGAAACGTCCGCCCAC 249223 32 100.0 35 ................................ AAAATGCCCGTCAGTTGCCATTAAAAGACCAAGGC 249156 32 100.0 35 ................................ ACGCAAAGCCGAAGCCGTCAAATTCCAAGACTGGA 249089 32 100.0 33 ................................ AAATGGGACGGCGAAGCCCTGTTCGACGGCAGC 249024 32 100.0 34 ................................ AATATCGTTTGCAAGTTCTGCAAAGCTGCGCGTA 248958 32 100.0 38 ................................ TGCCTGTATGGAAGAGCCATCGCTCAACGGATAAAAGG 248888 32 100.0 38 ................................ TGCCTGTATGGAAGAGCCATCGCTCAACGGATAAAAGG 248818 32 100.0 34 ................................ TGTGCGATTTCCTGAAAAAGCTGAGATATGTTTT 248752 32 100.0 33 ................................ AAATGGGACGGCGAAGCCCTGTTCGACGGCAGC 248687 32 100.0 38 ................................ TGCCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGG 248617 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 35 32 100.0 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGAGAGTTTGGCGAAGTCGGGGCTGCAAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : GGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTCAAAAAACGGCTTGATATTATCTGCATATATTAATATAATGATAATTATTATTAATCAAATATGGAAAATGTAGGGATGTGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATACTGGCAGCCTGTGGCGGCAATTTCGGCGTGCAGCCTGTTCAAACAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCGCCCCCTGCCAAACCTTCTATAGAAATTACGCCGGTCAACCAACCCGCCGTCGGTGCGGCAATGCGGCTATTGAGACGGAATATTGCAACTTCTGATAAGGATGGCAATGATTTTCCAAATAGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26248-26481 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQEI01000011.1 Neisseria lactamica strain M37177 M37177_CHA4079A26_cleaned_ctg_1115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26248 36 100.0 30 .................................... TGATTTGCGCGTCGGTTGCGCCGAAATTGC 26314 36 100.0 30 .................................... CGATTTCGGAATCAGACATACCCATAAAAA 26380 36 100.0 30 .................................... CAGTTTTTGCGGCGATGTTGACTTGGATTG 26446 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTTATTTTCAATTTTATGTTGAACTTTAAAGCAGTTTCGCAGTGCTGAAATTCCGCCCGAGCCCTTAAACCATACACGGCAGATGCCGTTCACAAAGGCGATGTGCAACTTTGCCCGAAACAGTCCGCCTTTACCCTTACAAGGACGAACAGCAAAAGACGGAACAGCCCGTACAGTCCGCGAAAGCGGAAAAACCCCAAGTTTTAGCAATGGCTGCGGCAAAATAGAAAACCGCCCTTAATCGGGCGGTTTTGGCGGTCTATTGACTTAAAAGCACAATTAAGGCTAGAATAACCCTAGCATCAATCGTAACAGTCAATTGCAAAATTCCTATGGTAAGAGAGATTTGCATTTTGATTTTTCCTGTTGAAGTTTCAAAACTTGGCAGGAATGCAAAAATCCCCTTGTTGTCAGCTTGGGGATTTTTGTTTGTCCCCGCCGCTCTTTAAGTTTCGCGCCTCTCGCGCCTGAATCTATCTCATAAAGTTCCTTATATATTA # Right flank : TTACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAATAATAGTTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGCAGGTTTGCACACAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //