Array 1 230656-232208 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWZ01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4499 NODE_3_length_466050_cov_79.503270, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 230656 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 230717 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 230778 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 230839 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 230900 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 230961 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 231022 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 231083 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 231144 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 231205 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 231266 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 231327 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 231388 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 231449 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 231510 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 231571 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 231632 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 231693 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 231754 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 231815 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 231876 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 231937 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 231998 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 232059 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 232120 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 232181 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 248523-249040 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWZ01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4499 NODE_3_length_466050_cov_79.503270, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 248523 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 248584 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 248645 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 248706 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 248767 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 248828 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 248889 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 248950 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 249011 29 93.1 0 ............TC............... | A [249038] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //