Array 1 93059-92721 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960798.1 Veillonella parvula strain DNF00876 Scaffold167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 93058 35 100.0 43 ................................... GTTCTGGCCCGTTTTCACCAACCAGCATAAGCCCTGGATTCTT 92980 35 100.0 38 ................................... CTTATTCATAGGAGGATAACATATGTTTTATTTCACAA 92907 35 100.0 43 ................................... ACTACCTCGCCTGTGTTAGCATCGATAATCTCGCCTGCTACTT 92829 35 100.0 39 ................................... AAGAATATGGAAATATCAATGACAGTATTGCTCAGTTTA 92755 35 94.3 0 .................................NN | ========== ====== ====== ====== =================================== =========================================== ================== 5 35 98.9 41 GTTTCCGTCCCCTAATGGGGATCATTTAATTTAAC # Left flank : CGCATAGATTTGTTTCCGTCCCCTAATGGGGATCATTTAATTTAACTTGACGAATTGCCAAACAACAAAGGCAACATAAGCGAATATAAAGGTTTCCGTCCCCTAATGGGGATCATTTAATTTAACTAAACAAGTACAAGTTTCCGTCCCCTAATGGGGATCATTTAATTTAACTGGACATGACACACAACGAAGTAAGAGAAAACCTATTCAAGGTTTCCGTCCCCTAATGGGGATCATTTAATTTAACCTACCCTATTACTTTAATCATTAATTTTGCTTGATAACTCTTGGTTTCCGTCCCCTAATGGGGATCATTTAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGTCCCCTAATGGGGATCATTTAATTTAACGTGAATATTACGACATCACAAATATTATTGAATTAGTACAAAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTCCCCTAATGGGGATCATTTAATTTAACCCTGTCTTTGAAACAACAGGTATTTACTGGTTCTAAAATGCCAAAAACGGCGGAGATTGTAAATCTACCCCAAAAGGCACTTTAGCGAGCTAAAATAATGCCGTTTAACCGCGCCACTATCACAACGGCGCAGATTTAGTTTTCCAAAGATTAAATCTAGGTCTATTATAGCACATCACTAGCATTAGTGAAAAACATATGAAAATAGAGCCACCTTATATAAGGTAGCTCTATTGAGATGCCATATGTAACTTATTTTCAATAGTTCATCTGCTCCAGCAGTTTCTTCTTTTTCTTATACGCCTATCCTCCTTTCCCAGATTTCTCTCCACCCTCCTGCTTCTACTTTCACCATCCAACGAATTATCTCG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTAATGGGGATCATTTAATTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 93856-93309 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960798.1 Veillonella parvula strain DNF00876 Scaffold167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 93855 35 100.0 41 ................................... TCTAAAGAGGGGTATAGAAATAAGTTACTACAAGCCTATAT 93779 35 100.0 43 ................................... CTTCCTACCGCTTTGTTGCGGTTGTAATATGAATTGGTATCTT 93701 35 100.0 42 ................................... CCTTTATATTTAACACCTCGTATAATTAGATTAATAAAACAA 93624 35 100.0 42 ................................... CAATTTCTGGCGTAGATAGGTATAATCTATCCGCATAGATTT 93547 35 100.0 45 ................................... TTGACGAATTGCCAAACAACAAAGGCAACATAAGCGAATATAAAG 93467 35 100.0 13 ................................... TAAACAAGTACAA Deletion [93420] 93419 35 100.0 41 ................................... TGGACATGACACACAACGAAGTAAGAGAAAACCTATTCAAG 93343 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================= ================== 8 35 100.0 38 GTTTCCGTCCCCTAATGGGGATCATTTAATTTAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTCCCCTAATGGGGATCATTTAATTTAACTTGCTTATGCTGGCATTGCCATAGAGTCAAAATTCATTGTTTCCGTCCCCTAATGGGGATCATTTAATTTAACTGGGATTTATTCCCTGAAGAATTCTACTTAGTGAGTGCAGTTGTTTCCGTCCCCTAATGGGGATCATTTAATTTAACGAATTATAACGCCTTATACGGTGATTGAAGTTAATTGCAATGAGTTTCCGTCCCCTAATGGGGATCATTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGTCCCCTAATGGGGATCATTTAATTTAACTCGGGGCTTTTACGAAGAAGAAAGCACTCAATAAGGGTGCTT # Right flank : CTACCCTATTACTTTAATCATTAATTTTGCTTGATAACTCTTGGTTTCCGTCCCCTAATGGGGATCATTTAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGTCCCCTAATGGGGATCATTTAATTTAACGTGAATATTACGACATCACAAATATTATTGAATTAGTACAAAAGTTTCCGTCCCCTAATGGGGATCATTTAATTTAACGTTCTGGCCCGTTTTCACCAACCAGCATAAGCCCTGGATTCTTGTTTCCGTCCCCTAATGGGGATCATTTAATTTAACCTTATTCATAGGAGGATAACATATGTTTTATTTCACAAGTTTCCGTCCCCTAATGGGGATCATTTAATTTAACACTACCTCGCCTGTGTTAGCATCGATAATCTCGCCTGCTACTTGTTTCCGTCCCCTAATGGGGA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTAATGGGGATCATTTAATTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 94457-94848 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960798.1 Veillonella parvula strain DNF00876 Scaffold167, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 94457 35 100.0 13 ................................... TTGTACTTGTTTA Deletion [94505] 94505 35 100.0 42 ................................... AGCCACGCACGCCCTTTGTATTAGCAGTAGGAATAATGTAAT 94582 35 100.0 43 ................................... AATGCACAACAGAAATCATCATTTCTACCGCAATAGCCTAGCA 94660 35 100.0 43 ................................... CATTTCTTAGGTTGTATACAGATGTTGTTGAGATTTGTAACAG 94738 35 100.0 41 ................................... CATCCTGTTTATAATATGGAATGTCACTGATGACATAACCA 94814 35 88.6 0 ...............................NNNN | ========== ====== ====== ====== =================================== =========================================== ================== 6 35 98.1 37 GTTAAATTAAATGATCCCCATTAGGGGACGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAAATGATCCCCATTAGGGGACGGAAACTCATTGCAATTAACTTCAATCACCGTATAAGGCGTTATAATTCGTTAAATTAAATGATCCCCATTAGGGGACGGAAACAACTGCACTCACTAAGTAGAATTCTTCAGGGAATAAATCCCAGTTAAATTAAATGATCCCCATTAGGGGACGGAAACAATGAATTTTGACTCTATGGCAATGCCAGCATAAGCAAGTTAAATTAAATGATCCCCATTAGGGGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTAAATGATCCCCATTAGGGGACGGAAACTTAGTTTCAAATTCCCATGTTTTGTTTGTGTTTAAGTCTTT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTAAATGATCCCCATTAGGGGACGGAAACTTCAAGTCTATCATTCTTATATGTGATTTTATATGTATCTTGCGTTAAATTAAATGATCCCCATTAGGGGACGGAAACTCTTGAATAGCTGAAACATTATTACGTTTCTTTTGGTTTTCTGGTTAAATTAAATAATCCCCTAATAGGGACGGAAACTATAATTTCTGGTGTGATGCTTTTCTTTTTTACACGTTTGCTAGTTAAAATAAATGAACCCCATTAGGGGACGGAAACGACTACGCTATCTGTAATATCGATAGTGCTTTCAATGTCTGTTGCATTAAATTAAATAATCCCCTGATGGGGCCGGAAACACCAATTAATACTTCTAATCGTTCAAAAGCCTCTTCTGCACTATTGTTAAATTAAAT # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAATTAAATGATCCCCATTAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 4 105261-105524 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960798.1 Veillonella parvula strain DNF00876 Scaffold167, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 105261 30 100.0 49 .............................. GAAACGCAGTCGCTAGTTGGATGATTGCTATTATTAAGGGTAGCCACTT 105340 30 100.0 47 .............................. GAAACGAATAACTTCATCATTGCGTTTAATTTCTTTATAGTAGAATG 105417 30 100.0 48 .............................. GAAACTCAACTATAAAGCCCTCTACAATATCTGCGAATTGAGGTAATG 105495 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================= ================== 4 30 100.0 48 GTTAAATTAAATAATCCCCTGGTGGGGACG # Left flank : GTCCAAAAGTCTGCGTTTGAAGCTTTGCTTAATAGGAAGCAATATGATGCTATGATGCGGCGAGCTAGTAAGATGATTAACCCTATAGAGGACTCCTTACGAGTCTATGTCCTTGATGACATTATAAATATCTATACTTGGGGTATTGGAGAACGTAAGGAACAAGACTGCATCATTCTTTAAATATAAACAGTTATTCTCGATTAATACTGTTACGATGTAGAAGTGTAATTAACAATAATAGAATCATTAATATTGGTAAAAGTATTTCAAGACTTGATGTTTTGCATTGATGATTCTATTATTGTATTATCTATTTTCTTATATGATATAATGGGTCTAGAATTTAACTCCTGAGAAATTAAATCTGCGCCGTTGTTATAGTGGTGCGGTTTAACGGTGTTATTTTAGTTTGCTAAAGTGCCTTTTAGGATCAATTTGTAATCTCCGCCGTTTTTTGTATTTTGGAACCAGTAAATATCTGTTGTTTCAAAGACAGG # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAAATAATCCCCTGGTGGGGACGGAAACTATCTGCATAGATTTTACAAGATACACCTTTTGCGCTTGTAGCGGTTAAATTAAATAATCCCCTGGTGGGGACGGAAACATTAAATAATTCAGCGATGCGTTCCACATCACTACGTTCATACGGTTAAATTAAATAATCCCCTGGTGGGGACGGAAACAAGAATATCACTATAGCCGAAGCTATAGAAAGAGAAGAATTGTTAAATTAAATAATCCCCTGGTGGGGACGGAAACAAGCCTTCTAATGTTATAGTTGCTAATACTTCTCTTGAATGTTAAATTAAATAATCCCCTGGTGGGGACGGAAACATTGTTTTATTCTCCTATTTATTCTTTTGAATTGTTGACAACATGTTAAATTAAATAAT # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAATTAAATAATCCCCTGGTGGGGACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 5 105700-106041 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960798.1 Veillonella parvula strain DNF00876 Scaffold167, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 105700 36 100.0 43 .................................... TTAAATAATTCAGCGATGCGTTCCACATCACTACGTTCATACG 105779 36 100.0 40 .................................... AGAATATCACTATAGCCGAAGCTATAGAAAGAGAAGAATT 105855 36 100.0 39 .................................... AGCCTTCTAATGTTATAGTTGCTAATACTTCTCTTGAAT 105930 36 100.0 43 .................................... TTGTTTTATTCTCCTATTTATTCTTTTGAATTGTTGACAACAT 106009 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== =========================================== ================== 5 36 98.3 42 GTTAAATTAAATAATCCCCTGGTGGGGACGGAAACA # Left flank : TGTAATCTCCGCCGTTTTTTGTATTTTGGAACCAGTAAATATCTGTTGTTTCAAAGACAGGGTTAAATTAAATAATCCCCTGGTGGGGACGGAAACGCAGTCGCTAGTTGGATGATTGCTATTATTAAGGGTAGCCACTTGTTAAATTAAATAATCCCCTGGTGGGGACGGAAACGAATAACTTCATCATTGCGTTTAATTTCTTTATAGTAGAATGGTTAAATTAAATAATCCCCTGGTGGGGACGGAAACTCAACTATAAAGCCCTCTACAATATCTGCGAATTGAGGTAATGGTTAAATTAAATAATCCCCTGGTGGGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAAATAATCCCCTGGTGGGGACGGAAACTATCTGCATAGATTTTACAAGATACACCTTTTGCGCTTGTAGCG # Right flank : | # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAATTAAATAATCCCCTGGTGGGGACGGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 1-230 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960777.1 Veillonella parvula strain DNF00876 Scaffold31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 32 88.9 30 ----................................ CTCTTGCATATAATCTTTAATTGTTTTCAT 63 36 100.0 30 .................................... CTTAGTAGTTACCACTACGTCCTGCTTATT 129 36 100.0 30 .................................... ATAAATTATCTAAAATAACTCACGAATGGC 195 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 94.4 30 GTTTTAGTACTCTGTAATTTTTCGCTATGATAAAAC # Left flank : | # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTACTCTGTAATTTTTCGCTATGATAAAACATTCCCCCTATATGGTAATAGAGGGATGTGTTTTAGTACTCTGTAATTTTTCGCTATGATAAAACAGTTAGTTCTCTAAAAGCTATATTGGATTCGTTTTAGTACTCTGTAATTTTTCGCTATGATAAAACCGAAGAACTGGGAATTGTTAGAACGTATTCGTTTTAGTACTCTGTAATTTTTCGCTATGATAAAACGACTGATAAAGCCTGCACTGTATGCAGGAAGTTTTAGTACTCTGTAATTTTTCGCTATGATAAAACCTTAGTAGTTACCACTACGTCCTGCTTATTGTTTTAGTACTCTGTAATTTTTCGCTATGATAAAACGTACTAGCCTAGAACAGGCATATCGGCACGGTTTTAGCACTCT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTTCGCTATGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 387-818 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960777.1 Veillonella parvula strain DNF00876 Scaffold31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 387 36 100.0 30 .................................... AGTTAGTTCTCTAAAAGCTATATTGGATTC 453 36 100.0 30 .................................... CGAAGAACTGGGAATTGTTAGAACGTATTC 519 36 100.0 30 .................................... GACTGATAAAGCCTGCACTGTATGCAGGAA 585 36 100.0 30 .................................... CTTAGTAGTTACCACTACGTCCTGCTTATT 651 36 100.0 30 .................................... GTACTAGCCTAGAACAGGCATATCGGCACG 717 36 97.2 30 .......C............................ TTGTCTAAAAGCCTGCAAAAAAACCACCTA 783 35 80.6 0 ......A....T...G..CG..-...........T. | T [808] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.8 30 GTTTTAGTACTCTGTAATTTTTCGCTATGATAAAAC # Left flank : TAGTACTCTGTAATTTTTCGCTATGATAAAACCTCTTGCATATAATCTTTAATTGTTTTCATGTTTTAGTACTCTGTAATTTTTCGCTATGATAAAACCTTAGTAGTTACCACTACGTCCTGCTTATTGTTTTAGTACTCTGTAATTTTTCGCTATGATAAAACATAAATTATCTAAAATAACTCACGAATGGCGTTTTAGTACTCTGTAATTTTTCGCTATGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTACTCTGTAATTTTTCGCTATGATAAAACATTCCCCCTATATGGTAATAGAGGGATGTG # Right flank : CTAGAGTAAAAAATAATGATTTTCTGATTGTTATGATTTTATGTATTAATACAATTAATGAATGTTAGGGGAGGGTATATATGGGATATATACTAGGATTAGATATCGGGGTTGCTTCTGTTGGTTATGCAATTATTGATGAAAACTATAATGTTCTAATTAGTGGGGTAAGATTATTTCGAGAAGGGACGGCAGAAGAGAACGTAGCACGTAGAGGGTTTAGAAGTAGTCGTAGAGGTGTGAGGCGGAGTCATCATAGATTAGAGCGATTAAAAGAACTCTTATCAAATGTACTAGGGGTAAGTGGAGATCAATCTTATACAAATCTCTATGAAATTAGAGTTAGAGGGCTTGCTAATAAGCTTTCACCTGATGAATTGATAGCTGCTATAATTCAATTGGCTAAACATAGAGGTATTTTCTATTTGAGTCCAGAGGATCTTGCTGCTGAGGACGGAAGTAATCGAAGTCCAGCAGACATTATTCGAAATAATGAGAAT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTTCGCTATGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 298-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960792.1 Veillonella parvula strain DNF00876 Scaffold105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 297 36 100.0 30 .................................... ATATGGGTGCCCCAATAATTGATACTGCTA 231 36 100.0 30 .................................... CTGGAACCTTTTCCCATTCCACAACGCCTA 165 36 100.0 30 .................................... TTTACTACAACGGATACACTGAAGCATACC 99 36 100.0 30 .................................... AAAGCGACCACATTGATTGAATGTAGCTAT 33 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.3 30 GTTTTAGTACTCTGTAATTTTTCGCTATGATAAAAC # Left flank : TTTTTCGCTATGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTACTCTGTAATTTTTCGCTATGATAAAACAAATACGTCAACAAAGGCGCATCGGACTGTGTTTTAGTACTCTGTAATTTTTCGCTATGATAAAACAATCTTGAAAGCCTACGCCTTTCAAAAACCGTTTTAGTACTCTGTAATTTTTCGCTATGATAAAACCTAACTATTCTACAAAATATGGTAAACCTTGTTTTAGTACTCTGTAATTTTTCGCTATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTACTCTGTAATTTTTCGCTATGATAAAACATGCTGCCGAAGATTATGCATTTATGCAAG # Right flank : A # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTTCGCTATGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1560-1926 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960792.1 Veillonella parvula strain DNF00876 Scaffold105, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 1560 37 97.3 29 ....................................G TATGCAATGCCACAATCAGGCACATGGTG 1626 37 100.0 29 ..................................... AAAGAAAACATTTAGAAGAACTAAAAAGA 1692 37 100.0 29 ..................................... AAGATATTAGGTAAACGTGAACCTGAAGA 1758 37 100.0 29 ..................................... AAGCGTGATTATACGAAGTTACGAAAGAA 1824 37 100.0 29 ..................................... TACATCTGGGTTCAATAAATCACGAATTA 1890 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 6 37 99.1 29 GTTTTATCATAGCGAAAAATTACAGAGTACTAAAACT # Left flank : AATTACAGAGTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATAGCGAAAAATTACAGAGTACTAAAACTAATCGAAGTTAAAACCGATTATAGTAAATGTTTTATCATAGCGAAAAATTACAGAGTACTAAAACGTATGCAATGCCACAATCAGGCACATGGTGGTTTTATCATAGCGAAAAATTACAGAGTACTAAAACTAACCAATTTATCTTCAAAAGCATTCGAAAGTTTTATCATAGCGAAAAATTACAGAGTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCATAGCGAAAAATTACAGAGTACTAAAACCTGTTGAACGTGGATTATCTGATTCAATGT # Right flank : AGCTGTCATAGACATGCTCAGGACGGCCAAGTTTTATCATAGCGAAAAATTACAGAGTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCATAGCGAAAAATTACAGAGTACTAAAACTGCTGCTATACTCGCTTTCTTTCTTATAGAGTTTTATCATAGCGAAAAATTACAGAGTACTAAAACCGCCAGATGATACAGGATACATAGAAACTAGTTTTATCATAGCGAAAAATTACAGAGTACTAAAACACCTGATGAATATAAAATTGATAGTTTTGAGTTTTATCATAGCGAAAAATTACAGAGTACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATAGCGAAAAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCATAGCGAAAAATTACAGAGTACTAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 2473-2706 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960792.1 Veillonella parvula strain DNF00876 Scaffold105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2473 36 100.0 30 .................................... TAGCATATACAAAATCAATGAACATCTATC 2539 36 100.0 30 .................................... CATCTAGCATAGGTGATCTCAGTTGTCTAT 2605 36 100.0 30 .................................... TAGCATATACAAAATCAATGAACATCTATC 2671 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTATCATAGCGAAAAATTACAGAGTACTAAAAC # Left flank : AATTACAGAGTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCATAGCGAAAAATTACAGAGTACTAAAACTGCTGCTATACTCGCTTTCTTTCTTATAGAGTTTTATCATAGCGAAAAATTACAGAGTACTAAAACCGCCAGATGATACAGGATACATAGAAACTAGTTTTATCATAGCGAAAAATTACAGAGTACTAAAACACCTGATGAATATAAAATTGATAGTTTTGAGTTTTATCATAGCGAAAAATTACAGAGTACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATAGCGAAAAATTACAGAGTACTAAAACTTCCATACGAATTGACATACCATTTACAAA # Right flank : CGTAAAAGACCCAGCGCCTTTGTCCGAGTAGGTTTTATCATAGCGAAAAATTACAGAGTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCATAGCGAAAAATTACAGAGTACTAAAACCTCAACAACGAAGTTAAGCACTTTTGTAGCCTTTCGCTATAATAAATCAATAAACAAAAAGAGCACAGATCATAAGACCCGTGCTCAAAATTCCACACAAAAAACATTAGTAATATGTACTACTAACTCAATTTACATATACTATTGTTAATAACTACTTAAAAGTAGTGATTTCGACATAAAGTCTTATTTTAGTAGATTCTGTAACCTTTCGCTATGATAAAATCTAATTACATATTATATCAGTATTACTTATATGTCAACACTTTCTAATTTTTATTCATCAATTTATTATATTTTTTATCA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCATAGCGAAAAATTACAGAGTACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 4 64991-64351 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960792.1 Veillonella parvula strain DNF00876 Scaffold105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================= ================== 64990 22 87.0 55 .......-.T.....G....... CCATTGAATTTAGCAATCATTTCTTGTTCTTTAGTTTCAGAAGGTTAAATTAAAT A [64980] 64912 23 91.3 54 ........G.G............ TTTAAAAATTAAAATACACGTTCAAGCTCGCTATCTCTACAAGTTAAATTAAAT 64835 23 95.7 55 ........G.............. TTCACCCGTGCGCCGTTCATAGTCTTTTATCATACTTTCAAGGGTTAAATTAAAT 64757 23 95.7 54 .....................C. CCTTTTTAGTTGTAATATGGATTGCGGCAGTATTTGCCACATGTTAAATTAAAT 64680 23 95.7 55 ....T.................. ATTTCATCGTTATAATGAATGTAGGTTTTCATCACCATTGCTGGTTAAATTAAAT 64602 23 100.0 55 ....................... AGTTTTTCACGATACAAAATCAATGCATATTCTGTAGCACCTAGTTAAATTAAAT 64524 22 91.3 53 .......-.T............. TCGTCTAACTGAAATTGCCATGTCCACATTTAATTATCTTCTGTTAATTAAAT A [64514] 64448 23 78.3 53 ........TTA.....T.....T AGTTCACCAGTTTGCTTGTTTTTGTACTCATGCTTTGTCTTATTAAATTAAAT 64372 22 78.3 0 .......-.......T.AA...A | ========== ====== ====== ====== ======================= ======================================================= ================== 9 23 90.4 54 AATCCCCTAATGGGGACGGAAAC # Left flank : GGGACGGAAACCTAAAATTTCTGCACAATATTCCACTACGTTTGAAAATCCTGTTAAATTAAATAATCCCCTGGTGGGGACGGAAACAATTGAATAAACCCAATTCTATCGATTTCTAGGCTCCCCATGGTTAAATTAAATAATCCCCTGGTGGGGACGGAAACAAGGAACAAAAGGCAACTAAAAAGAATGATAGTGAAAAAGAGTTAAATTAAATAATCCCCTGGTGGGGACGGAAACGTCATTTGCGATAACCACATAAGAATTCCAGCAGTTCATTTCGTTAAATTAAATAATCCCCTGGTGGGGACGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTAAATAATCCCCTGGTGGGGACGGAAACTCTTGTTTGATTTCATTGTTAATATCAATGCTGCCTTTTAAGTTAATTAAAAT # Right flank : GCACTATCTTATTATTTGTAGATAGTGCTTTTTCTTATTTTATATAAACATTAATTTTTTACGGTTGCCATTTCGAATATCCAAATCCCATCATGATAATGCTCACGACTAGCATACCATTACCAAGGGTAATGGCGCTTTCACTTGTGGCTAGACAGGTAGTAAAGGATCCGATGCCCATAATGATTGTGCCTAGTATAGCTGATAGTTTATGAATTGCCATGATAATCACCCTTTGCTTTCACTAACAATATTAGGTTTAACAATATACGTAATGACTGCGTACAGTAGGGCACCGATTACAATCCCGTTCAGCGAAGCTAGTCCGAATGGTATGAATTTAACACAAATCAATGCGATGGCCCATGTGATCCATGGAACTAGATTCCATTTTTTGAAAGTCGCTTTGTTGTAATCGATATATTTTCCGCGATGAACCAGGTAAAAGTCCGCTAAGATAATACCGCATAGTGGCGGAACGATGATGCCTAGTGTACTTA # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.52, 5:-1.5, 6:0.25, 7:-0.71, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCTAATGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 65251-65592 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960792.1 Veillonella parvula strain DNF00876 Scaffold105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 65251 35 100.0 41 ................................... TCTTTTTCACTATCATTCTTTTTAGTTGCCTTTTGTTCCTT 65327 35 100.0 42 ................................... CATGGGGAGCCTAGAAATCGATAGAATTGGGTTTATTCAATT 65404 35 100.0 41 ................................... AGGATTTTCAAACGTAGTGGAATATTGTGCAGAAATTTTAG 65480 35 100.0 43 ................................... CAAAGGGCAATAATTACATTATTCCAACTGCTAACAGTAAGGG 65558 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 5 35 100.0 42 GTTTCCGTCCCCACCAGGGGATTATTTAATTTAAC # Left flank : GGGGATTATTTAATTTAACCCTTGAAAGTATGATAAAAGACTATGAACGGCGCACGGGTGAAGTTTCCGTCCCCATCAGGGGATTATTTAATTTAACTTGTAGAGATAGCGAGCTTGAACGTGTATTTTAATTTTTAAAGTTTCCGTCCCCCTCAGGGGATTATTTAATTTAACCTTCTGAAACTAAAGAACAAGAAATGATTGCTAAATTCAATGGGTTTCCGCCCCCTAATGGGGATTATTTTAATTAACTTAAAAGGCAGCATTGATATTAACAATGAAATCAAACAAGAGTTTCCGTCCCCACCAGGGGATTATTTAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCGTCCCCACCAGGGGATTATTTAATTTAACGAAATGAACTGCTGGAATTCTTATGTGGTTATCGCAAATGAC # Right flank : CCAACCTCAGTTAAAGGTACTATAATCTCAAGTTTTACAGTTAGTTTCCGTCCCCACCAGGGGATTATTTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTCCCCACCAGGGGATTATTTAATTTAACGCGAATATAAACATATGCAACTAATACAAAATACCATACAAGTTTCCGTCCCCACCAGGGGATTATTTAATTTAACTAGAAATTAAAGACAAAACATTAGAAATTTCAACCGCTTATCAGTTTCCGTCCCCACCAGGGGATTATTTAATTTAACTATCATTAGTTATCGTGTTTATTCAACGCACGAAAGAAAAACAAGTTTCCGTCCCCACCAGGGGATTATTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCACCAGGGGATTATTTAATTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 6 67020-66832 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960792.1 Veillonella parvula strain DNF00876 Scaffold105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 67019 35 100.0 42 ................................... TTTTTTTGTAGTCATTTTAGACCCCTTTTCTCACCGCTTCAA 66942 35 100.0 41 ................................... ATACTGCACCGTTATGGACACCAGAAGAGTGTCTATATTAT 66866 35 91.4 0 ................................NNN | ========== ====== ====== ====== =================================== ========================================== ================== 3 35 97.1 42 GTTAAATTAAATAATCCCCTGGTGGGGACGGAAAC # Left flank : GGACGGAAACTTTTTTTGTAGTCATTTTAGACCCGCTCATACGATGGTTTTCTATTCTCTCGGCCGTTCATACA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAAATAATCCCCTGGTGGGGACGGAAACTTTGCTACAGACTTTGAACTAATGCAATATCAACAATGTCAAGTTAAATTAAATAATCCCCTGGTGGGGACGGAAACTTTTTTTGTAGTCATTTTAGACCCCTTTTCTCACCGCTTCAAGTTAAATTAAATAATCCCCTGGTGGGGACGGAAACAGTTGATAGCGTTTATTGCTACCCTGCAACCCTAATCGGTTGGTTAAATTAAATAATCCCCTGGTGGGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAAATAATCCCCTGGTGGGGACGGAAACTGATTCCGCAAGATGCA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAATTAAATAATCCCCTGGTGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //