Array 1 565-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JANK01000071.1 Pediococcus damnosus LMG 28219 R50501_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 564 36 100.0 30 .................................... ATTGGCAAGACATTGTCGACAACATGTATC 498 36 100.0 30 .................................... AGGTATCGTTTGTAATCCTACGAGTGCAAT 432 36 100.0 30 .................................... GTGATACCAGTGCCGTTTAACGCTGACATC 366 36 100.0 31 .................................... ACTTTCCAAAAGCCAAGAAAGCTGGTTGAAA 299 36 100.0 31 .................................... CACTTCCACATTTTTGGCACCATCAAACGCA 232 36 100.0 30 .................................... CATAAAACATGATAAAGACGTTCAGCATGA 166 36 100.0 30 .................................... TATTATATGCAGATCCTAATGTTGAACTAA 100 36 100.0 30 .................................... TACTCAATCGCAAATTGATTCCGCACCAGA 34 34 94.4 0 ..................................-- | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.4 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : AGCAGATTTAAATAAAATGTTTCAAGGACAATTACAAAAAAAGATCGTTTCGAAATTAGATGATGATACAAGATTGCAATTAACGGATCTTAATAATAAATTAAAATCACTTATTTTTGATGCTACGTTTTCGTTAGACCTTCCGTTAAAAGTAGATAGTGAATTTGATCCAGTTAAATTAGTTAAATACTGTAATGTTGGGTTTGTAAGTGCTTTAAATAGGGATCCTTATGATATAATTGAAACTGTATTAAAAACTGCTTCTGAATTAAAAGAAACAAAAATATTAATCTTAACTAATGTGCGCAATTATCTCAGTGTCAGCCAATTTAATGAATTGGTGAGTTTAATTAGCACGCTTGATTTGAACATTCTGTTTATCGAATTCTCAGATAACAGATAATCACGAAGAATTCGATAAATGCCGTTATTGCTACGTTGATCAGGATTTTGTTGATTGGCGTTATTAATGTCTATGAGAGTAGCATTATAAAAAAACG # Right flank : A # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 2676-1848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JANK01000150.1 Pediococcus damnosus LMG 28219 R50501_150, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2675 35 97.2 30 -................................... CTGACCATAAAGCTGTATCAGCAACCACCA 2610 36 100.0 31 .................................... TTAATCAATAACAAACAGATGAATACAGGTG 2543 36 100.0 30 .................................... CGCTGCTAATGCTAATAATATTTCTGGTGC 2477 36 100.0 30 .................................... ATATCTACCCCTAGTTTATCGTCTTCTCGG 2411 36 100.0 30 .................................... GCCAAGATGCGAGTAGCAGCGGAAGATGTT 2345 36 100.0 30 .................................... TCAATGATCTGCCTGATTTACGCAAGGTTT 2279 36 100.0 30 .................................... ATCTTATCTGGCATTTCATCGTTCATGCGT 2213 36 100.0 30 .................................... CGCTTGGGTTCACATACATCACAACGCGGT 2147 36 100.0 30 .................................... AATGTTTTTGTTTGAGAGACTGCTGCATAT 2081 36 100.0 30 .................................... TGTTAGGCCTTCCACAGTAAAGCTAATTTT 2015 36 100.0 30 .................................... CCGTTGGTCCGACAACTTCCGCAGCTCTTT 1949 36 100.0 30 .................................... TAATGTAAAAAAGCTTGACTGTATACACAT 1883 36 91.7 0 .................................GAA | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 99.1 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : | # Right flank : TCAGGAGCGGCTTGACGCATTGAGGTAAAATAGTTTTAATTATTATCGTATATATAAAATAAATGAACCTCAATTGCACCAAAATCTGAACTTCATTAAAACAGAAAAGAACTACACAAGGAGCCAAGTATGCAAGTAACAGTAAAATCATTTTCAGAGTTATCCAATACAGAACTATTTAAAATCTACAAACTCCGTACCCAAGTCTTTGTTGTTGAACAATTATGTGCCTATCAAGAGGTAGACGATGAGGATCTCATCGCCCAGCATTTACAATTTACAAACGAGGCCCAACAGTTAGTGGCCTATTTACGAATCATCCCTGAAACGAACGAAACGATTGTTCATATTGGTCGGGTGGTTGTTAATCCACTCTTTCGCAAACAAGGGTATGGACGCAAACTCATTACGAGTGGACTTGAAACGATTAAAAAAGATATGCCAAAGGTCACAACGGTAAAGATTCAGGCCCAGGCTTATTTACGATCCTTTTATCAATC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //