Array 1 557535-556836 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_018690.1 Actinobacillus suis H91-0380, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    557534	    36	  97.2	    30	..C.................................	TTTATATGCTTACATCACTTCATTCACTGC	
    557468	    36	 100.0	    30	....................................	TTGCTTTACGAAGGTATAAGCTCCGTCCTA	
    557402	    36	 100.0	    30	....................................	GACAGCATATCTGTTAAACCCGGTCAGAAT	T [557390]
    557335	    36	 100.0	    30	....................................	CGCATACATTAGGCATTACCCTCAACCACT	
    557269	    36	 100.0	    30	....................................	AAATGGGGCGAGCCAAAGCGAGAGCGAAAG	
    557203	    36	 100.0	    30	....................................	CTCGCTGCGCCGAGCGTTTAACCAGCTCTG	
    557137	    36	 100.0	    30	....................................	GGGATAGATATTACATGGCTCATAAATTCC	
    557071	    36	 100.0	    30	....................................	TCAATATTGCTGCCATTTTTCGCATTTTTT	
    557005	    36	 100.0	    30	....................................	GAAGGCTTTAACTATGATGCGGTAAACGAA	A,T [556995,557001]
    556937	    36	 100.0	    30	....................................	CATCATCTGAAGTAATACTAATATTATTCT	
    556871	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        11	    36	  99.7	    30	GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT	                              	       

# Left flank :   ATTTACCTTGATTTGTGCAGCTTTATGCCACACCAGTTTTGCAAATTCTGCTGAAAATCCGACCGCTTATACGGAACACGCCAAATACAAAATCTCCGCTACCGATATGAAAATCTTGGTTCGTCAGTTAAATAATATTGAACAATGCCTTTTCCCCGATCTTGCAAAACCGAATTACCAACAAATCTATGACAATTGGTCTGTTGCCGAAAGCATGACGATGCTCTATTTCCAGCAAAATTTATTAAAAGAGTTAATTGGCGAACACAATGCTCAATTGATCGAAAAAGACGAATCCTCACGTCTTTACTTTGAGCAAATGCATGAAAAATATAACCACCAAAAAGCTAATGTTGATAAATCTCGCTGCGAAGAGTTCAAACCAATCTACGCTCAAATCAAACAGCAAATTGAATACTCAATACCACAGGTGTATAAATAAGCTTTCTTAGTTATTTCACATAGCTACAATTCGACTCTGGTACACGACTTCGTCAGGA
# Right flank :  CGGGACTCTAAAAAGCCTTGAGCAGTAAGGGTTCAAGGCTTTTTTATTATTAAAAAATTGCCTTAAAACAGTAAAAGTTGGTTCGAATTCACCTTTTTTTCTTGCAATTTTTTCTCTCCAACTAGAATTTCCATATTGGCGAATTGTTTTTCAGTAATAGAAATGCAACGAATTGAACCCTCTTCAGGCAAATGTTCTACTAGTCTTTTATGATGTTTTTCCATTGAATCTCGCCCTCGAATAATTCGAGTATAAATAGAAAGTTGTAACATTTGGTAGCCATCTTTCAGCAAAAATTGCCGAAATTGATTTGCGGCTCGCATTTTGGCTTTGGTTGTTACAGGTAAATCAAATAATACAATCATACGCATAAACACATTCTCACTCATATTGATGCTCCGCAAGCGGTAGAATTTCAGGAAGTTTTAACAAATCTGCATTTCGTTGAGTTAATGCAGATTGAAATGAACTCACGCTTCGCTCAATACCGGTTAAGGTAT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:62.96%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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