Array 1 7074-7223 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPS01000217.1 Streptomyces hirsutus strain NRRL B-3040 B3040_contig_217, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7074 28 96.4 33 .........C.................. CCCGAACACCACCCACGGAAGACGGGCCGTGCT 7135 28 100.0 33 ............................ TCGCCTTCCCTCCTGACCTTGACCACCAAGGGC 7196 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 97.6 34 GTGCTCCCCACACGCGTGGGGGTCTACC # Left flank : CTCAACGACAAAAGTTCATCGAGCCGCACGACTCGGGCAGCATGTGGGAACACATCTACGCTGGACTTCTAGCGCAGCTGGCAGCCGTGACGAGTGAGACCATGCACCGCATTCATCAAGGGGAAGGGAGTGCCATCCTTGCCAAGGGCTTGCTCATTCTGCGAGCCGACCCAGGACTGAACGAGGAGTATGAGGCGGCCCGTTGCCACGCGGCACTGCCCAACGGACCTGGCTTACGGCAGCCTCGCCGGACGTTTCGCCCTCGGCCCCCTCCTGTCCGAAGCGTGAAGCTTCACGCCAACGGCGAGGCCCCGCAGGTAGACGCCCGTCAGCCATCACAATAAAACCAGCGGGATGCGCTTGTCGGCCTCCGCCATCTCTCGAACGCGGAGGGCGGGTCCGTCTCAGCAACCTCGACCACTCCTTCTCAATGCGGAGTAGCGAAGGGTAGAGTGAGCAAAAATCAGCCTGTTGGTCTTCAAACCTGCAGGTGGATTAGG # Right flank : CGCTCCACACTCAAGCGGGCAGCGCTAGCGTGATCGGGCTCCCACGCGGGTGGGAACCCGATCAACCGCCACCCGCTAACTCTCGTACTCGCACGGGCACTCCCCCACGTATGAGAGGGCGTTGAGTCCGTTTCTTGTAGATGCCTCGTCCGGTCTGGGTGAGGAAGCCTTGACGGGTGAGGTGTCCGAGGCGGGAGCGGGTGACGTTCAGGGCCGGATCGTCGGTGGGCCAGCCGAGGAGTTCGTGCAGTTCGCGGACGCGGAACGGCTGGTCGGGGTGCTGGTTGAAGGCGTCCAGAACCTGCTGGTGGGCGGTGGACGGCTCGGCGGGGTGGGGGTCGGTGCCGTCCGGCGTGATCTCCTGGACGATCTTCCGGGCCGTGGCCAGGTCGGCGAGGCGGTTCTCGGCGTCGGCGCGTGCGGAGGTGAGGTGCTCGATCTGCTGGCGCAGTTCGTCGGCCCGGGCCATGGGGCCTGCTCGTACCGGCTCTGGAGACCTT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACACGCGTGGGGGTCTACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 16331-16181 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPS01000122.1 Streptomyces hirsutus strain NRRL B-3040 B3040_contig_122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16330 28 96.4 33 .........................G.. GACTGGGACCGGCTGGACGGGGCGCTGGCCGAT 16269 28 100.0 33 ............................ TCACTCCCGTGATCGATGTGCGGGCATGACGAA 16208 28 96.4 0 .C.......................... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 97.6 34 GTGCTCCCCACACGCGTGGGGGTCTTTC # Left flank : GACGTCGATGCCTTCGTGCAGGTAGCGGTAGCCGGTGGCCTGGGAGATGCCCGCGTCGCGGGCCAGGCAGTGGACGCAGCCGCGTTCGCGGAACCAGCGCAGGACCAGTACGGCCTGGCGGAACGGGCCGAGCGCGCGGCTGTTGCGCGGGGTGCCGATTCGGCGGCGGTGGGCGGCGAGCAGACGCGAGAGGTGGTCCACGACGTGGCGCGGGACGTCGAGCGTGGCAACATAGGTGACCAACGTGAAGCCTCTGGTGGTTACGGACATGATCTTGTGGTGAGACCTGTCCTACCAGGGGCTTTACGTCTGTCCACGGCCAGGCCCAGTCCGTCCGGCCTGCTCACGCATGGAGCGGTTCATGCCGCTTCGCGTAGATCATTTCGCTGAGAAAACGTCACTCACTCGAAGTCATAGAACACGGCGCCGTCAGCACCGCCAACTCGGCTACACTGAGCAGAAATCGGCCTGCTGACCTTCAAGCCTGCAGGTGAACGAGG # Right flank : CAAGGCAGAATCGTCTGTCTCGGCATGCTTGTGCCGTATCAGGCAACGTTCGCCCTGTTGTGATGTGACGCGCCGTCCCGGTGCTGTGCCGGGCGGCGCGTGGCCGTCGCCCTGTCCGGGTGGCAGAACGAGTACATGTACGCGAGATCGACGATGCCGAAGGCAGACGGCTGCTTCGGATCATCCGCCGGGGAAACCGGGCCGGTGGTGACCTGGCGGCGTGCCCAGATGGTCCTGCTGTCCGCCCAGGGCATGCCGGTGGCGAAGATCGCCAAGGTCACCTTCACCAGCGCGGACCGGGTCCGGGACGTGGTCCACCACTTCAACACCGACGGCTTCGACTCGCTGCATCCGAAGTACAAGGGCGGCCGGCCCAAAACCTTCACCCGGCCCGAGCGGCGCGAGAGCCAGAAGACCGCCAAGTCCAAGCCGGTCGAGCACGACCTGCCGTTTTCGACCTGGAACCTGACCAGGCCGGCGGACTTCCCGGTCGCCGAGGG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACACGCGTGGGGGTCTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7921-8315 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPS01000534.1 Streptomyces hirsutus strain NRRL B-3040 B3040_contig_534, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7921 29 89.7 32 TC.A......................... TACGAGCAGATCGCCGAGTTCAAAGAGCGGTA 7982 29 100.0 32 ............................. GGGATCGGGAAGACGACCGCGACGTTCGCCGT 8043 29 100.0 32 ............................. TCAGCCGCCCAGGTAGGACTTGAAGCGTCCTT 8104 29 96.6 32 ................T............ GACGTCGCCTACCCGGTGTGGACGATCCAGGG 8165 29 100.0 32 ............................. ACCAACATCAACCCGGTGACGCGGTACGGCAA 8226 29 96.6 32 ............T................ CTCGCGCTGCCCAGCGTGGCCGACATCCGGAC 8287 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCTGGAGCTTTCCGAAGCGGAACACGTGACGGTGCGCGTCATCCCCTTCGACGTCGAGGGCTTCGGTGGGGCTGGAAGCGCCATGATCTACGCGGGCGGCGCCACTCCCGTGCTGGACACCGTCGTACGCGACGGGCCGCACGGAACGGCATTCGTTGATGCCGAAGCTCAACTGCAGCGCTTTCGAAAGCTCTTTCGTAAGGTGGAAGCGGTGGCGCTTGAGCCAGAGCGCTCCCGCGCGTTCATCCACCGGCTGACGAAGGAGCTGTGAAGTCCGCGATGACGACCCCCGACGTCTGGAAGAAGTCGTCCTACTCCGGTGGTGGCGAAGGCAATGCCTGCGTGGAAGTGGCTTTTCGCCGCGACTGCATGGCCATCCGCGACTCGAAGGCCCCCTTCCAGGGCAGTCTCTCCGTCCCTTTCCCCACCTTCGCTGCTTTCGTCGGCGCGCTCAAGGAACGCCAAGGGCGCTTGGCGTGACTCGGGGCGCCCCCTGAAAT # Right flank : CGCCATGCCGAAATCCAGTCCTTCGGGATCAGCGGGTGGGGAAGGAGTTCAGAGCGAAATCCCATTGGTCGGCCTCTTGGAGCAGTGCCGCAGCGTCCACCCGCAGCTCCACGAAGTACTGGTAGATGTCCGCTCCGTCATCTCCCTGCTGCCATGGGGGTGCCGCCTCCAGGGATAGGTGAACGCGAATCACCGCCCCGCGGTCAGTGCGGGCAGCGAGGCTCATGGCGAGGACCGGTTCGACGAACCAGGTGTCCGGGGACAGCTGGCCTTCGGCATCGGGCCCGGTCACCTCCAACGCCCCGGAGGCCACCGCCCGCAGCCATGCGGACACCTGACGGGCTTCCTGGGTCAGCAGACAGGGGTCGGTAAAGGACCAGCTGCCCTCGGGAGTGACCACCGTTCCACTGATGACCAGCCAGTTGTCGTCGTATGAGTCGCCTTGGACCACGGGGAACTGATAGCTCAGCGGAAGGAGTTCGACACTGCTCGCATGATCA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 1519-1734 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPS01000146.1 Streptomyces hirsutus strain NRRL B-3040 B3040_contig_146, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 1519 33 90.9 28 ................T.........T.....C GTTCCCTCCTCGCCGCCAACGAGGAGTA 1580 33 100.0 28 ................................. CGTTACGGAGACCACGAGCCCGCCCGGC 1641 33 93.9 28 .............................T..G GTGCCGTGCGGGTATCTGACCGACTACA 1702 33 93.9 0 ...............................GG | ========== ====== ====== ====== ================================= ============================ ================== 4 33 94.7 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCCA # Left flank : GGACGTCCAGTCCCTGCTGACCCCGCCCCACACCCACACGACCACAGCCGACGATGACATTGACGAGGAACGCTCCGAACGGCGTGACGTGCGGATGGTCCACCTCTGGGACCCCAAAGCCGGAGTCCTCCCAGCAGGCGTCAACTACGCCGAAGGAGGCGGCTGATGCCCTCCATGGTCGTCATCGCCACCACCGCGGTCCCCGACCACCTGCGCGGCGCCCTCAGCCGATGGACCAGCGAAGTAGTGCCCGGCATCTTCGTCGGCAGCGTCTCGGCCCGCGTCCGTGATGAACTCTGGAACGCCGTCACCGAAGTCGTGGGCAACGGCGCCGCCGTCCTTGTCCACCCCGCCGCCACGGAACAGGGCTACGCCATCCGCACCGCAGGAACCCGCCGCCGGGTCCCTGTCGACTTCGACGGCCTTACTCTGATCCGCATGACCGCCGCACCAAAGGTAAAGGAAATGCAATCCCCCTCTTAAGGTGCAGGTCAGGAAGG # Right flank : GTCATGGGCGACCTCCCGGCACCCAGCTCACACAAGACCGCCACGTCCGACTCATGTGGCGTGCCGGATGGCTCACCCCTCCGGCAGCAGGAGCGTGCAGGTCTCTCCCGGTGCGACGATGACGGCCCGGTCGGGCAGGACCACACGGATCGGGGACTCCTCCGAGTCGGGCACACCGATCCCCAACTGTCCGCTGCGCAGCCGGATGCTGACGCCCCAGTGGCCGCGGTAGCGCAGTGAGAACCCGTACTCCGACAGCGCCGGAAGCGGCACGGGGTCCAGCCGGAGGGCGTCCTCGCGGGTCTCCAGGCCGGTCAGGCCGCGCTGCACCAGATCCAGCGTCCCGGCCATGGCGCCGAGATGGATGCCTTCACCAGTCGTGCCGCCCTGGAGGTCGGCGACATCCTGTTCCAGGGCTTCCTGACAGTACGTCCACGCCTCGGCCCGGCTGACCCGTGCGAGGACCCAGGCGTGGACCAGGCCGCTGAGGGTGGAGCCGT # Questionable array : NO Score: 3.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //