Array 1 63915-64351 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYC010000035.1 Streptomyces sp. RK31 RK31_contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63915 28 96.4 31 .................A.......... TGGTGCGCGGGTGTACGGGAGGAGGCCCTCC 63974 28 89.3 33 C..................A.......A AATCGGGCGACAAGGGCGTCTGGGTCGCCCGGG 64035 28 96.4 33 G........................... TATTGGGCCCACTCAGCCGGGGACCGGTTGTGG 64096 28 100.0 33 ............................ ATTCCGTGCCCGGACCCGGTGGAGATGCGCTGG 64157 28 92.9 33 ..........AT................ CAGCGTGCCGGCCGCTGGATGGCCGTCGTCGAG 64218 28 100.0 33 ............................ GTGCAGGCGTCCCCGAACCTTCCGATGGACGGG 64279 28 100.0 18 ............................ TCGTCGAGCGCCTCGGTG Deletion [64326] 64325 27 82.1 0 ...G..T..T..G..-............ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 94.6 31 TCCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : TCTCCAGACGACGACAACGCCGAGACGAACCCACGACCCTCCCGAGGGATGTGGCCCGCCTCGGACCAGTCTGGACTCTGGAGATGCAATGTCCCGGTTCCTGCACAAGTTCGTCCTGCGTCGCGAAGTACTTCTCAGTACCTCACGCGTAGTGGTCAGCGCGGTAATCCGTGCACTGACCAGCGAACTCGTCAGCTGGCTCTTCTGAGCCAACGGTGACGGACCCCAGGGGTCCGTCACCTCTTACATGCAGACGACCCCCGCCGGCCGAACACGTTCTGTGCAACCGGGCCACACCGCAGGACGCAACGCCCGGTCACAAGCGGACATGCTGACTCCACACGAACGTAGATGACCCCGCCCTCACCGCCGCACCGGACGGCACAAGCCGCCTTGAACGTGCCAAGGGCCTGGACGTGCAGCAAAACCCCAACAGCACACCCCTGTCACCCCTCAACAAGCCGGCCAAATGAACCGCCCCTCCGACGTTCATCGTGATG # Right flank : GGAGTGGGTGGAGCGGGCCCGTGCCAGGCTGAACCAGATCGAGGTCCGTAAGAGCTGCCCACTCAAGAGAAGTATTCTGCCGTTCGCGCAGCTTCGCGTGTGGTGGAGGATGAGATCAGTGCTGGCCTAAACAGGGCCACAGCCTTCTGACCTGGGTGCCCCTGCTCCAGCAGGCCCGGTCGCGGCAGCACGTCTTCACCCAGTACGTTGACCATCCAGGGGACTGAGGGGTGGGGGACATGGATGTACCGAATGTCATCGGCGACTGGCAGGAGTACCAGTCCGACGAACTGTCTGGGCTGCGGGTACGCGTGCACGACCTGAAGAAGGCCAAGCCGTCACGTGGCCGAGACGACGACGCCAAGGGCCTGACCTACGTCAGCTTCCAAGTCACCTTCGAAAACCGCGGCAGCGAGTACTACGGCATTGACTTCCGAGACCACCCGAAGCACGTCGATGTGAGGGTGGGACGTGACGGGCACGAGGCCTTCGTCGACATC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.50,-6.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 65899-68246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYC010000035.1 Streptomyces sp. RK31 RK31_contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 65899 33 93.9 27 ..................A.............A CCGGATCCTTCCAGCGGGGCAGTCCGG 65959 33 97.0 24 ...............................A. CGTCGACCGCGGTGAGGGCCGCAA TACT [65988] 66020 33 87.9 28 .......T......................GCT CGCTCTGGCCGGGGGTGACATCCCAGTG 66081 33 84.8 28 ..............A..............AGAT CGTGTGGCAGCCGGAACTGATGCCCTCA 66142 33 97.0 28 ...............................C. ACGGGGTGTACGCGCTGCACTGGCTGGA 66203 33 81.8 25 .......................CCG.A.G.C. AGGCCGTTCCCGCTGAGTCGGAGCC 66261 33 90.9 28 .............................GT.A GGACGACCGTGGCCGCCTCGTAGGCCTC 66322 33 93.9 28 ..............................A.T GCACGCTTTTCGGTGGTCCGTCGGGCGG 66383 33 90.9 28 ..............................GCT CACCGCGCGGGGCGAGTCGGCGCGGGTC 66444 33 97.0 28 ................................A CCTGGCTGCCGTGTGCGTCCGTGCGCTG 66505 33 93.9 28 ..............................T.A GGGTCACGTTGACCCGGCGGGGCGTCTC 66566 33 100.0 29 ................................. TGCGGGCGTAGACCAGGGCGCGGCGCAGG 66628 33 97.0 28 .............................T... TCGGCTCGGTGACGGGCGCGCACACCCA 66689 33 93.9 28 .............G................G.. TGGGGCGTCCGACGTAGACGGTGCCTTC 66750 33 93.9 28 .......T........................T CCCTGTGGGTGGAGATCAGGCCGAACAC 66811 33 90.9 28 .............................G.CC CCGCCAACGCGGCAACCTGCTCCGTGGC 66872 33 90.9 27 .............................TA.C CCCCTGAGACCGGGGACCGACCGTCCC 66932 33 90.9 28 .............................TT.C CGTTCGCCTTCCAGGACCAGGCGACGTT 66993 33 93.9 27 .............................T.A. GGTGCGGGCGCCGCCGGAGGCGACGAC G [67022] 67054 33 93.9 28 .............................GA.. CGCTGGACCAGACGATCCAGGCGCTGGC 67115 33 87.9 28 .........T...................AG.A CTTCCGATACCGCAAGTGGGTGACGGCT 67176 33 97.0 25 .......................C......... ACAACCGGCAGTACGTAGCCGAGTG GGC [67205] 67237 33 81.8 28 .............GT..............TATC CGCTGTCGATCGCTTCCCGGCCGGGGTG 67298 33 90.9 28 ..................A..........TG.. GAGGGTTCTCCTTCTCGGACGACGTGCG 67359 33 87.9 28 .............G...............ATC. AGGAGTTGGAGCAGCGGCTGCAGAAGGC 67420 33 87.9 28 ...........T....T..............CT CTACGTGGTCGCCGAGCCAGGCAACGTG 67481 33 90.9 28 ...T.........................TG.. GAGGGTTCTCCTTCTCGGACGACGTGCG 67542 33 93.9 26 .............G.................C. TCGCGGGTGTCGAGCGCGTGCCCCTC AT [67571] 67603 33 90.9 28 .............................GG.A CCTTGAGGGGAACGGTGCGCTGGAACGT 67664 33 87.9 28 ..........................T..GA.C CGACGTCGCGCGGCTTGTGCCCGGTCCA 67725 33 84.8 28 C...........................AA.CA CGGGGCCGAGCTTGCGGCACTTGAGCTC 67786 33 93.9 28 .............................A..C ACCTGTTGCTGCCGTTGCTGGCTCGTTC 67847 33 93.9 28 ..............................T.T TCAACGGCGAGAGGCTGAGGGCGCTGTG 67908 33 90.9 28 .............................TA.T TGATCGACGTGTTGTTGTAGGCGGGCTC 67969 33 90.9 28 .............................GAC. GGTACTCCGCGGCTCTGTCCATGATGCT 68030 33 93.9 28 .............................T..T GCGTTGCCGGGTCGGGGGTCGTCTCCGG 68091 33 97.0 28 ................................T CCCGCAGCGTGAGCGCGCCGGTGGTGGT 68152 33 93.9 28 ..............................TT. GGGCAGCCATCCTGGTTGGACTCGCCAT 68213 33 93.9 0 .C...........................T... | G [68242] ========== ====== ====== ====== ================================= ============================= ================== 39 33 91.9 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Left flank : CGTCGGGCGGTGTCTGGTGGTCAGTTCCACCTATCCCTGGACTGCTTAAACTCCGATGGCGCGTGGTCAGGATTCCCAGGGCGCCCGCTTTCGTGTGGGTCGGGCGCGGCGTACGGTCGGAGTCATGACCAGCGGAGACCGGCAGAAGCGTGATGGTTCGGCTAAGCGGGTTCAGCTGACCAGCGGTGATCACAGCGGGCCGAAGGACACGAAGGCGAAGAGGCCGCGTGTCGGCCGGCCGGACCGGGCCCAGCGGAAGGCGGCCGCCAGTCGGGCCTGGGTGGAGCTGTTCGATCGTCTTCGCGAGGTGAGACAACGGGAGCAGGCCAGGGTTGATCCCTTCCAGGAGTGATCAAGGGGCCAGGCCTGTGCCCGCCCGATCAGTCTGCGGGTTAGCCGCTCATGCGGCTCTCTGTAATCTAGTGGTCTGTATCCGTGGCGGTTGTAGTCCTGCTCGTGGCTTCTTGTGTATCGGCGTCGGTTCGTCCAGGAGGAGAAGT # Right flank : GATGGTTCCGCGTTCGATGACCTGCCGCCCGACCTTGACCGCCTGCACACCCTGCGGGTGTGGCACGTCATGTGGCTGCAGCGCATCGACGCCAAGATCGCCGCCCTCGCCAGACGGCAGACCGAAGAGGAACGCGGCCGCCGCAACCGGTCCGCACCGCCGGAGTGGATCATCGAACTCGGCATCGGCGAGCGGCGCCCACCCCTGCAGATCCATACAGGCGACTGCCACATGGCCGGCAAACGACACCGCCCTGTCGACCGGGTCGAAGCCCGCCGCCTCCTCGCCACGGGACTCAAAGCATGCGGCCACTGCCGGCCCGACAGCCTGCTCGGCATCACCGAGTTATCGAGCAACCCAGCCTCACTGCCGCCGCTGCACGCCAATCACACTCGCACCATCCGGTCCATTTTATACTTCCGGGGCGATATGCACCTATCGCCCCGGAACAGGGCCCGTCACGACGGGCCCTGTTCCCGCGGGTCGGCGGGTGGGAGCTG # Questionable array : NO Score: 3.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:-0.03, 8:1, 9:0.05, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //