Array 1 753386-751952 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAUR01000057.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain sg_wd3 wd3_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 753385 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 753324 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 753263 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 753202 29 100.0 32 ............................. CCGTACCCGCCGTTTCCATAGGACTCATTCAT 753141 29 100.0 32 ............................. GGATTGGGGGGACGTCAATATTAAACCCGATG 753080 29 100.0 32 ............................. TTGCTGGAGCGTGAATTCACATCTGAGAACGG 753019 29 100.0 32 ............................. ATCCAGTTAGCATCGGTACGCCAGTGCCCGAC 752958 29 100.0 32 ............................. GAGTGGAGAAATGATTGATTTTAGTCTCGACT 752897 29 100.0 32 ............................. TAAATGGTGCGCCGACCAGGCATTACCGCATA 752836 29 100.0 32 ............................. GACTGGCTAATCACGGTTAACGCCGTGCCGGT 752775 29 100.0 32 ............................. GCTGGCCGGTATCGGTTCATCATGTCGCTGAT 752714 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 752653 29 100.0 32 ............................. CCCTTGGATTCACAGTAAAGCCGCGCCTTATA 752592 29 100.0 32 ............................. GTCCGTGAATCAGGGGCGCGATAAATTTTTGT 752531 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 752470 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 752408 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 752347 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 752286 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 752225 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 752164 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 752103 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 752042 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 751981 29 100.0 0 ............................. | A [751954] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 771568-769950 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAUR01000057.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain sg_wd3 wd3_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 771567 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 771506 29 100.0 32 ............................. ATTGGAACAGCATGGGTTGTCTTTGGTTTCGC 771445 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 771384 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 771323 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 771262 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 771201 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 771139 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 771078 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 771017 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 770956 29 100.0 32 ............................. AAAACAACAAACACTGGAAAAATGGAAGGGGC 770895 29 100.0 32 ............................. TGTGGTGGATCAAATACCACGACAGGAAACGA 770834 29 100.0 32 ............................. TCGCGCGAGAGTTATTTAAAGAGGGTAATTCA 770773 29 100.0 32 ............................. TCCAGGCTGAATAATTTCGGCGACGGCTTCGG 770712 29 100.0 32 ............................. CTGAATGTCCAGAGTGTGGCAATCACTTTACA 770651 29 100.0 32 ............................. CTGATAACATTCGGCGCGCTGGAAAATTCAAG 770590 29 100.0 32 ............................. TGGAATCAAGTTTTACTCGCTGGCTGAGGGCG 770529 29 100.0 32 ............................. AGTCCTCTTCTGACTCTTTCCGTTATATCAGT 770468 29 96.6 35 ............................A CCGGACTCCTCACCGGGCATAGTAATAAATGGGAT 770404 29 100.0 32 ............................. CTGGCGCCGAATTTTTCTTTGAGGGTCTGCAA 770343 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 770282 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 770221 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 770160 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 770099 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 770038 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 769977 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= =================================== ================== 27 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //