Array 1 48504-48003 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG749283.1 Selenomonas noxia ATCC 43541 SCAFFOLD6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 48503 31 90.3 36 ........A..C..................T TCGTTGTCCTCCCGCACTTCAACGCCCGTGCCGCGT 48436 31 93.5 36 ........A..C................... CTCCGCGACTGGAACGCAGCACACCCCGATGCGCGT 48369 31 100.0 36 ............................... AGCTTCCGGCGGGCACCCGCATTGCTCAGTGCCTGT 48302 31 100.0 36 ............................... GGTCTGTCCGGGACGATGCAGACGCTTATTTGTCGT 48235 31 100.0 37 ............................... GCCATGAGGGAACGGGACAAAGACCGTAAGCCCATGT 48167 31 93.5 36 ........A..C................... TCATTGATGCGGATATTGCGGATGTCCTGCAGTTGT 48100 31 96.8 36 .......T....................... AAGGCTGCCGCTGCCACGAAGGTCATCCAGTGTGGT 48033 31 96.8 0 ..............................T | ========== ====== ====== ====== =============================== ===================================== ================== 8 31 96.4 36 CGCGCCCCGCATGGGGCGCGTGGATTGAAAC # Left flank : CTACCCGCCATTTTTGTGGAAGTAGGTACTTGCTATGTATGTTTTGATCACCTATGATATCAGTACAGTTGACGCCGATGGGCGCAGGAGGCTGCGCCAGGTCGCACGAAAATGCAGAGCCTATGGGCAGCGCGTGCAGAACTCTGTCTTTGAGTGTAAGGTGGATCCAACCCAATGTAAGCAATTGGAACTTGCGCTGTTGGATATCATTGACCTGCAGGAAGATAGCCTGCGATTTTACTACCTCGGAAAGGATAAAGGACCGAAAGTAACGCATTATGGTGTTAAAGAGTCCTATGACTTGGAGGCGGCCATCATCATCTGAGCATTTATTACTGAGTGCGAAGGTGAAGTGAACAGAAAACAGAATGTAAAAATATAGGTGCGAGAATCATGCCGCAGGAGGGGCGTGGGTCTCAGGTGCCGAGAAAATCGTATTTGTGGAGGGGAATGCCCATAAATACGTGGCAAAAGGGGGAAGTCGTGACCTCTTTTGCCGT # Right flank : TCATGATGATATACAGCGCCGACATGGAGAAGGGGGGCGCTCCTTTGTAGAGCATGCGGATTGAAGCTTCTTCTCATTATAGAAGATTCTTGTTGTTCACTTTTGTAAAACCCTTGCGTGTCGCTGTCAAACATGCTATACTAACTTTTGTCGCGTGAGCGTATGCTTTTTTTGTGCGCGCACATAAGAATAACTCTGCCGTCGACGAGATCGGCGGCCAAAGACCAAAGAGGAGGTGATTTCGTGAGATTGTACGAAGTCATATTTATCGTGAAGCCGATGGAGGAAGAAGCGACAAACGCCGTCATCGAGAAGTTCACAAAGCTCATTCAGGCCAATGGCGGTACGATTGAAAAAGAGGACCGCTGGGGCAAGAAGCGCCTAGCCTATGAGATCAAGGACAATACCGAAGGATATTATGTTCTGCTGTACGTTAATGCAGAGCCCGCCTGTGTCGCTGAATGCGATCGCGTGATGAAGATCACTGACGAGCTGCTTAA # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCATGGGGCGCGTGGATTGAAAC # Alternate repeat : GTCGCGCCCCACACGGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 110943-110038 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG749281.1 Selenomonas noxia ATCC 43541 SCAFFOLD4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================== ================== 110942 34 100.0 38 .................................. TTTGATGCGTGCAAGGTAGCCTTCGGCTTCCGCGTCAA 110870 34 100.0 39 .................................. TTCACCAGCAGTAGCGGTGACGGAGAGAAGGTTGTTAAA 110797 34 100.0 38 .................................. CTGACTTGCAGACGCGTTATCCTGCGATCCGATATCCG 110725 34 100.0 39 .................................. CGTGCTGGACGGAACATCAACCATAAGGTCGCCTTCTCA 110652 34 100.0 40 .................................. CTATACATCTCCGCGCGGATATTGGCATAGCGCTGTGCAT 110578 34 100.0 35 .................................. CTCTTCCTCCTATTTCACGAGACTAATCACCTTGC 110509 34 97.1 39 ............T..................... CCCATTCATCTTCTTCGAGATCCAATTCTGAAGAGAAGT 110436 34 97.1 42 ..........T....................... CTCTGCGCCCGTTGTACCTGCCTTAACGCACTCAAGGCGAGC 110360 34 97.1 42 ..........T....................... CTCTGCGCCCGTTGTACCTGCCTTAACGCACTCAAGGCGAGC 110284 34 97.1 38 ..........T....................... CTGCTCCCACTTCCCGCCGCGCCAGTAGAGGTCATATC 110212 34 97.1 36 ............T..................... TATCGGGAGATGTACGCCGTAGTGCTTGGCGAGCGT 110142 34 100.0 37 .................................. CTCCAATCGGCCGCGTACAAAATCAACGGGCTTTGCC 110071 34 91.2 0 ...........................G....TT | ========== ====== ====== ====== ================================== ========================================== ================== 13 34 98.2 39 ATTTCAAAACCACATCCCCGCAAGGGGACGGAAA # Left flank : TACTGTACCTATATGCAGGAGGCAGGGCTGGCAAAGGATGCACAACTTCACAGCGATATGATGGACGAACTCGGCAAGCTGGGGACCGTCAGAAAAGTACGCAATAGTGTCGCTCACGTCATCGTCAACGTGACACGCGAGAGCTTTCAGAAGGACACACAGATGACCCCACCCGCGCTTATGGACACCTTTGCCAAGATGCTCACCCTCGTCTATGGAACGAAAGTCAAGGAGGCACGCACAACCTATAGCCGCATCAACAACTGGCTCGAAGAAGCCCTCGAAATCCACGAATAAGGAAGATGTCTGCTCTTTGTGCCGGCGGGATTGTGCGTCATGGAGCATTATGCTATACTGCACGTAGAATCTGCGCCGCACTTAGAGCCGCAATGACTGCAAAGAATTTTCGAACAAGAGCTGCCGCGAAAAGGAGGGGAATCTCATTCGCACCGCAAAAGTATTTTTTCATGCAGTCAGCACAAGGCATCCCAACGCAAGGA # Right flank : TTCCAAGGATGTTCTCTTTTACACGGAAGGAGTCTGAGCAATGAGTTTTGCCTATATCACGGAGGAAGGGGCGTTCATCCGGAAGCGCGGCGGGAATTTTACGGTAGGGCGTAATGAGGAGTCTGTGATGGAGATTCCCGCAGACGCTTGAGGGTCTGACGCTGATCGACACGGTGCAGGTCTCGTCGAGGGCGATGGTGGAGCTCCTTCGTCTTGGCATTCCCGTGACGTGGCTTTCGCGTACGGGGTATTTCTTTGGGCGTTTGGAGTCAACGCGTCATGTGAATGTCTTTCGGCAGGAACGGCAGATCCTGTTGAGGGACTCTTTTTTTTACCTTGCGATGGCACGCAAGGTGATCGCAGCAAAGGCGCACAATCAGTTCATTCTCCTGCGGCGCTATAACCGCAGTGCTTCGCTGCCTGAGGTTCGTACGGCAATGGCGGAGATCACAGCGCTGAGCAAGCATATTCCGCGGTGCGAGACGAATACACAGCTGATG # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAAAACCACATCCCCGCAAGGGGACGGAAA # Alternate repeat : ATTTCAAAACTACATCCCCGCAAGGGGACGGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 48301-48935 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG749279.1 Selenomonas noxia ATCC 43541 SCAFFOLD2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 48301 33 100.0 35 ................................. ATTGAATTTTGTCATGCAAATGGTTGGTCGTGTAA 48369 33 100.0 33 ................................. ATCTTCGGCAACGTGTTCGGCTGGGTACATCGG 48435 33 100.0 34 ................................. CCATCCTGCGCGTCGTAGCTGCGCGTCTGGATGC 48502 33 100.0 34 ................................. ATCAATCGTGATGAGCACGAGCGCTACATCATGT 48569 33 100.0 34 ................................. GTATCTCCTCCATGCCCGTGAACTGGTCGAGCTC 48636 33 100.0 34 ................................. AACAAAGTTGCAGATGCAGCACAATACAGTGGAT 48703 33 100.0 34 ................................. GCCGTCGAACTGCTCCTCCCAGACGATTTGCTGC 48770 33 100.0 34 ................................. TTATGCCCCTTTGTCAACGTACTGGACGCACGCT 48837 33 100.0 33 ................................. CAGTATTTCGGAATGATTACGGTCGTGACCGAC 48903 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 10 33 100.0 34 ATCGCGTTCCTATGCGGACGCGCGGATTGAAAC # Left flank : GGATTTTTCTGACTGATGTAGTTTAGCAGATGCGGAAAAAAGTTGTTGAAATGGTCTTGAAGTTGGAGAACTTCGCGCAACCTCCTGTGCCCCCATCATTAGGTTGTATTGATCTATCTGGACTAATATGTGGAACAATTACTGCTAGTGGAAGGTTCGTATGTTGGATGAAGAGCTTGCGGAACTTAAAGATACGATCACTTACGACATGAAAAAACAGTGCATAGGAAATCACTATTTTAAATGAGTCTGGGAACCTTCCCTAAAGAAGTTAATTGTATGTGCGTGAACTGAGGTGTAAAATAGAAAAAGAGACGATTCAATTCTCATGGAAAAATAGTGAGTGCGAAGATGAAGTGAACAGAATAATAAATATTAAAGCGAGGCATAAAAACTTCGCTAGATCAAGTTCGTGGGAGTGGGCATCAAGAAAAAACACATATGTAGCATATAATCGCTATGATACATCGCAAAAGAGGTCTTTTATATCCACTTTTGCC # Right flank : CTCCTTGCGGAGCGCGTGGATTAAAGCATAATAAAGTATGAAAAATGGCGCTGCCGGTGACGAGCAGCGCCATTTTTGTAGGAATCGAAATTTTGTGTTAGACTATGCCCATAGAAATTGTGATGGGGGTGATGATGTGCTCTGCTTTCAGGGAATATACGCGGATTACGGAACGGGAGACGATGCTGTGCATGCGCTTGCAGATGCCTCGCTTTCTGCGGGGCGCGGGGAAGTGCTCGCGCTGATCGGTCCCTCGGGCTGCGGAAAGTCGACGCTGCTGCGCGTTGGGGCGGGGCTTTTGCGTCCCAAGGCGGGAACGGTGCTTGCTGATGGTATTCCCATAGATCAGCGCACATTGCGTATCGGATTTCTGCCGCAGAATTATGGTTTGCTTGCATGGAAAACGGTGCGTGAGAATATCTTGCTCAGCACTGAGGTCAAAGGGGAATGGAACGAAGAGCGGGCGTCGGTATTCGAGGAGCTTGTCAAAGATCTTGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCGTTCCTATGCGGACGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //