Array 1 3886-2759 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZZB01000032.1 Pseudomonas aeruginosa strain HUM-236 PA3_B2_NODE_78_length_23220_cov_42.6306_ID_155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3885 29 96.6 32 ............................A GCAGGATTTGGAGTCGGAGCGTTTACCTACAT 3824 29 100.0 32 ............................. GTGAACGATGCGAATCGGGCGGGGGTTTGGTC 3763 29 100.0 32 ............................. GCTTGGTAGATGCCTGGAACAAGTCGGTCAGC 3702 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 3641 29 100.0 32 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCA 3580 29 100.0 32 ............................. ACAGGGACGTTCTCCGCGAGCTGGCCATCGAC 3519 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 3458 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 3397 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 3336 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 3275 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 3214 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 3153 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 3092 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 3031 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 2970 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 2909 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 2848 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 2787 28 79.3 0 A..........A..C.....-..A....T | C [2778] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5033-3294 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZZB01000066.1 Pseudomonas aeruginosa strain HUM-236 PA3_B2_NODE_108_length_11523_cov_35.8111_ID_215, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5032 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 4971 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 4910 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 4848 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 4787 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 4726 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 4665 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 4604 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 4543 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 4482 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 4421 29 100.0 32 ............................. CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 4360 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 4299 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 4238 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 4177 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 4116 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 4055 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 3993 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 3932 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 3871 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 3810 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 3749 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 3688 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 3627 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 3566 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 3505 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 3444 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 3383 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 3322 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //