Array 1 105240-105537 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQX01000005.1 Bacillus pumilus strain LNTW65 NODE_5_length_132567_cov_60.6297, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 105240 32 100.0 34 ................................ AGACCTGTCGCATTCGTGATGTACTCTTTCGCTG 105306 32 96.9 35 ..................A............. TGAAAACACCGAGATGATTTCATTGTCCTTTCTCA 105373 32 100.0 34 ................................ TTAAATTGAGTGGCTTTTAAAGTAACTTCATATC 105439 32 93.8 35 ...A...............T............ TAATGATTCACCGTCAGAAGGGGAGACTGACTTCT 105506 32 87.5 0 ...A....A..........T.......A.... | ========== ====== ====== ====== ================================ =================================== ================== 5 32 95.6 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CCTTGAGGAAATGATTCTCCTCTTGTCGTCGCACTCTATGTGAGTGCGTGGATTGAAATGCCTGTTTAATGACTTCAGCGCCGGATATTTTTGTCGCACTCTATATGAGTGTGTGTGACCATGCTCAGGTGCTTCTATTTGTCGCACTTTACATGAGTGTATGGATTGAGGTAGCTTGAAAGAAATGTTGACAGTTGCGCTTGATTTAGGTGTGAAAAACATGACTCTGGCTTAGTAGTCATATTTTTAAATGAATTCAAACCTGTTGATGAAATCATGAAAGTACCTTTAGAGCAATATTTGTTAATTAAATAGGATTAAGAAATATTCGGTGCGAATGTGAGGTGAACATAAAATCCCCGGTGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTATGAAGGAGAAAACAAAATCCTATATTGAAATTTGTGGATTTTGACTATTATTTCCTAAAAAATGTTACAATTAGGGCGAAAATCGCA # Right flank : TTTGTGTCTGTTTTTTGGTTAACTTCTCACCAGGAGTCGTGCTCTACATGAGTGCTTAGCTATTCTTGGTTTTAATAAGAGAAAACAAAAGCATTTATGTTTGATCGAAAATTATTAGTGGAGTAACTATACTGATTAAAGTTTACTTTTCTTCAGAGATTGGGAGAAGAGTAGTCATTTTAGTTAATAAAGAAAATTGAAGACAATAAAATTAATTAGAATAGCTCTCCTCGGATATGTTAGAAGAACATTAAATCGAGTTAAATGAATTAAAAACTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGACATTCGCACCTTTTCATTCGACACAAATGAGAAAAAATGTATATTTCATGAAGGGGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTGACTATCATTTCCTAAAAAATGTTACAATTAGGGCGAAAATCGCAGTCGCATTCTACATGAGTGCGTGGATTGAAATCTTGCGATCCATCTAAATT # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 114306-114600 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQX01000005.1 Bacillus pumilus strain LNTW65 NODE_5_length_132567_cov_60.6297, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 114306 32 96.9 34 ...................T............ CATATCAGTTATGCTCTTTTTTTCGTTCATCGCG 114372 32 100.0 34 ................................ AATACGTAGTTCAGCAAACTATCGAAGTGTACAA 114438 32 96.9 34 ...............G................ CCATCCGAAAACTCAGTAATGAGTGATTTTAGTG 114504 32 96.9 33 ............G................... GGTGAATGGTGGGAAAAGACAGGAAAGCCTGGT 114569 32 71.9 0 .........A....A.....A.A...CACTG. | ========== ====== ====== ====== ================================ ================================== ================== 5 32 92.5 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TGGATTGAAATTATAATTCGGATGACTTTTCATATCATCCATTCTCGTCGCACTCTATATGAGTACGTGGATTGAAATAACAGGTTTCGCGACACCTTGACCAACCTTTTTGTCGCATTCTATATGAATGCGTAGATTGAAATTCTTCAGCATAATTTTCTAGCTCCACCAATTTCGTCGCACTCTTCATGAATGGGTGGGTTAATAATTGAGAAAACATAACTCTGCCTCCTGACTCAGTAGTCAAGTATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAACTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTATTCATTCGACAAAAATAAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGAAGGTTTTGACTATGATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCACA # Right flank : TTTCTGCGAATTACATAAATTCAAATATCTATCCAGTTCAAAATCTACACAAATGAAAAATCAAAATAATGTACTTCCCCCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAGTTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCAACAAAAGGATAATGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCGTAATGATCCTTGTATTTATCCACTTCCCACCGATAGACAGGAGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATCTTCATAATTTCAGTATCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGACAACCTCTCCATTCATACTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGG # Questionable array : NO Score: 6.69 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //