Array 1 333797-334557 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHUI01000065.1 Salmonella enterica subsp. enterica serovar Rissen str. 150 SEER_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 333797 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 333858 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 333919 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 333980 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 334041 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 334102 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 334163 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 334224 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 334285 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 334346 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 334407 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 334468 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 334529 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GAGATCGACCTCTCCCATGTTGTGCCGGTTACGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47-440 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHUI01000010.1 Salmonella enterica subsp. enterica serovar Rissen str. 150 SEER_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 108 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 169 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 230 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 291 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 352 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 413 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGCCGGATCAAACATTGCTCCAGATTGCCACTGAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17051-18910 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHUI01000010.1 Salmonella enterica subsp. enterica serovar Rissen str. 150 SEER_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17051 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 17112 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 17173 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 17234 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 17295 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 17356 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 17417 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 17478 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 17539 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 17600 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 17661 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 17722 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 17783 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 17844 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 17905 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 17966 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 18027 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 18088 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 18149 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 18210 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 18271 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 18332 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 18393 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 18454 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 18515 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 18576 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 18637 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 18698 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 18759 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 18820 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 18881 29 93.1 0 A...........T................ | A [18907] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //