Array 1 1-1795 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXI01000005.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CVM N38869 N38869_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... GCGACATCAAAATCTATTTTTCATTCTATCTG 60 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 121 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 182 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 243 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 304 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 365 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 426 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 487 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 548 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 609 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 670 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 731 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 792 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 853 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 914 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 975 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1036 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1097 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1158 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1219 29 100.0 32 ............................. CCAGCTTACACTATTTACGACGTTATTGAGCA 1280 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1341 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1402 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1463 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1524 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1585 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1646 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1707 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1768 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108967-107901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXI01000006.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CVM N38869 N38869_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108966 27 93.1 32 --........................... GCTGAGATAATTGCCGATCATCTTGAAGACAT 108907 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 108846 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 108785 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 108724 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 108663 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 108602 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 108540 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 108478 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 108417 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 108356 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108295 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 108234 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 108173 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 108112 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 108051 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 107990 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 107929 29 93.1 0 ...........................AC | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 628-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXI01000070.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CVM N38869 N38869_contig_70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 627 27 93.1 32 --........................... CCCGCGTATTAACAACGACGAGCAGGGCGTGC 568 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 507 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 446 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 385 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 324 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 263 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 202 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 141 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 80 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GCCACAGTTGAGGTTTGCCGAATTTTTCAACACGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //