Array 1 284535-286087 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXK01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3985 NODE_3_length_549093_cov_124.412585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 284535 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 284596 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 284657 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 284718 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 284779 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 284840 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 284901 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 284962 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 285023 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 285084 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 285145 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 285206 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 285267 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 285328 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 285389 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 285450 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 285511 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 285572 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 285633 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 285694 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 285755 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 285816 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 285877 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 285938 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 285999 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 286060 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 302402-302919 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXK01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3985 NODE_3_length_549093_cov_124.412585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 302402 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 302463 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 302524 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 302585 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 302646 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 302707 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 302768 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 302829 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 302890 29 93.1 0 ............TC............... | A [302917] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //