Array 1 711-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGSL01000108.1 Pseudomonas stutzeri ATCC 14405 = CCUG 16156 contig00131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 710 29 100.0 32 ............................. GCGATCAAGGCCGCCGGCGCGCTGGAGCCTGC 649 29 100.0 32 ............................. CGGATTGCTGCGCCCCTGCGCGGCTGTCACCG 588 29 100.0 32 ............................. TATTCGCAACGATTGGCCGGTTTACTCGCGGC 527 29 100.0 32 ............................. CCCGCTCGGGCTAGAAAGGTCTGGCCGGCACC 466 29 100.0 32 ............................. GCCGGCAAGCTGTTCCTGGACTACGACTACAC 405 29 100.0 32 ............................. TTTGCAAGAGCTGCCCAGACCGATCTGTTACC 344 29 100.0 32 ............................. CCCGCCTAGTGCGGGCTTCGTCGTTTCTGGAG 283 29 100.0 32 ............................. TGCAGAGCGTGACAGGCACAGGCCTTGCGCAC 222 29 100.0 32 ............................. TTTGTCGGGGAGTTAAGGTAGGCCGACGTACC 161 29 100.0 32 ............................. ATCGCGCAGAGTGTCGGCGGTGGATAGGTAAA C [156] 99 29 100.0 32 ............................. TACCGCAAGCGCCTGAAGGCAGTCGATGAGGA 38 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GCGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : CCAGCCGGTGATGCCGAACTCGGCGGCCAGG # Right flank : GCTGACCCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44-500 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGSL01000107.1 Pseudomonas stutzeri ATCC 14405 = CCUG 16156 contig00130, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44 29 100.0 32 ............................. TCCTGGCAGGCTCAGCAGGTGGCCACCGCGCT 105 29 100.0 33 ............................. CGGAGCGGCAACCGAGCGGACTACTCCACCCAG 167 29 100.0 32 ............................. GCGCGGCATTGCTCTGCTCGACTAGCTACAGC 228 29 100.0 32 ............................. CCTGTAACCGAAACCAAACCTCTACGGATGTA 289 29 100.0 32 ............................. TTAGGCGGGCCAGGTCGAGCGTCGCCTGATCC 350 29 100.0 32 ............................. GCCCGGTAGTCGTAGTTCTGAATGATCGGATC 411 29 100.0 32 ............................. ACCGATCAGCTCGACATGCTCGACCACATGGA 472 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 GCGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : GGGATGAACCGGCTGATCCTGGCTGCCGGTACGTTGCTCCCAGG # Right flank : TGGCCTGCTTTCAGCAAGCGCTTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-456 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGSL01000074.1 Pseudomonas stutzeri ATCC 14405 = CCUG 16156 contig00086, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 28 96.6 32 -............................ TCAAAGCGCGCTGTAAAGCTCGGACATCAAAC 61 29 100.0 32 ............................. CCGTTCCGAGTACAGGGAGATGGTCGAGGCGA 122 29 100.0 32 ............................. GCGCCGCACAGGCCAACACCCCTCAGAACAAC 183 29 100.0 32 ............................. TCGCCGGTATCGAGATCGGTGTAGTGGCTGCC 244 29 100.0 32 ............................. CTGTATCGGACAATCTCAACCTGACCCGCAGA 305 29 100.0 32 ............................. CATAACGGGCAGCTATTCCATGGAAGGCCTAG 366 29 100.0 33 ............................. GCCGCGTGGTTGGCTGGTACTCGACCGAGCAGA 428 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.6 32 GCGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : | # Right flank : GCCGAACATGTCCGCAACACCGGGATCGCCACGGCTCCCCTGTAATACGCGGGCAATCGTGCCCGTGGAGGCTGCAAACGGATTGCTGATGCGGACGGGGCGCTACAAGCGACACTGTTTGAATACTGCATGCAGAACTCTGCGGTTCAAGTTTGTCGTGCTCCAGGCGACAACCTGGCATTGCCCAGAGGTTCTCCATGACGCTGCCCATAGTCGCCTCCGCCGCTTCCGTCGCAGCCGCACGTCAGACCGTGCGTACCGCGGTGCCAGCCCGATCTGCGGCACAAGCGGAGCAGGCCTCCGAGTCACCTGCCCGGATGTCCCTCAGTGAGCGCTCACGGGAGCGACTGCTTTCGGCCGCCAAGGCCACTCGCTCGTTTTCCGCTGCGCTGCGCGAGGCCGATAGCGCGAAGAAGGAAGCGGCGCGGCGACGCATCGAGGACATCAAAGAGCGCATCAAGATGCTGCGGATGCTGGTCAGCGGCGGGCTGGCATCGAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 622-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGSL01000112.1 Pseudomonas stutzeri ATCC 14405 = CCUG 16156 contig00136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 621 29 100.0 32 ............................. CTAGTCGAGCAGCGATCCCGCGAGCGCCAGCG 560 29 100.0 32 ............................. TCCACCGGCAGCGAGTGGGTTGGTCGCGTGGT 499 29 100.0 32 ............................. TCCACCGGCAGCGAGTGGGTTGGTCGCGTGGT 438 29 100.0 32 ............................. CGCCGGAGATTCCTGAAGCCGACCGCGACGAA 377 29 100.0 32 ............................. CAGGGAGGCCAGCTCGACGTTGAAGGCTATCA 316 29 100.0 32 ............................. TGCGTCGAACTTGTTGAGTTGGTTGAGCCTGG 255 29 100.0 32 ............................. CGGGAGGCAGCATGAGTTTCGCAGAGAGCAAG 194 29 100.0 32 ............................. CCGAAACGCTTCCACTCGCCCTGATGGTCGGT 133 29 100.0 32 ............................. GATGAGGTGCGGGCGCCGCTGAATGAGTGGGA C [128] 71 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GCGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : GGCGTATCATCCCGCTGATCGAAGAAGTTTTGTCAGCCGGTGGGATCGCCCCGCCGCAGGCCCCAGCCGAATCGGTACCGCCCGCCATTCCCAACCCGCAAGGTCACGGCGATGCCGGACACAGGACCAAGTAGATGAGCTTTCTTGTGGTGGTCACCGAGGATGTTCCGCCACGGCTGCGGGGGCGGCTGGCCATCTGGCTGCTGGAAGTGCGGGCCGGTGTCTACATTGGCGACGTGTCCCGACGCACCCGGGAAATGATCTGGCAGCAACTGGAGGCAGGCTACGAGGACGGCAGCGTGGTGATGGCCTGGGCCAGCGCGAGCGAATCCGGTTACGACTTCCAGACCCTTGGCGCCAACCGCCGAGAACCTATCGACTATGACGGACTTCGTCTGGTCGCTTTTCTCCCTCCAACAGAACGCGCTCTTTAACAAAGAAAAATCGGTAGCTTTTTCGTAGCCGATTTTCTCTTTTCGGAACAATCGGTTACGTTTAGT # Right flank : GCCGAGCAGCGCGCACAGGCCGAACGTGACGCAGCGTTCCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //