Array 1 52348-52547 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZW01000004.1 Neisseria meningitidis strain NM2433, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =================================================== ================== 52348 23 100.0 10 ....................... GGTATTTCTA Deletion [52381] 52381 23 100.0 51 ....................... CGACTTAGAAATCACCTGAAACGAGAAAAAGAACCGAAACCGAACAAGCCG 52455 23 95.7 47 ....A.................. CGGCTCAAAAGTTACGAAACGAAAAATAACCGAAACCAAACAAGTCG 52525 23 87.0 0 .........GC.G.......... | ========== ====== ====== ====== ======================= =================================================== ================== 4 23 95.7 36 GATTCCCGCCTGCGCGGGAATGA # Left flank : GAAACGAGAAAAAGAACCGAAACCGGACAAGTCGGATTCCCGCACGGGCGGGAAGGACGGAATTTCAGATTGTTGTTTTTGATTTTCTGTTTTGTGGGAATAACGGGATTTTGGATGATGTGCATTTTCGGGAAAACTAAAAACCCTCCGCCGTCATTCCCGTGAAAGCGGGAATCTAGAATTTCAATGCCGCAAGAATTTATCGGGGATGTCCGGGGTTTAAAGGTCTGGATTCCCGCCTGCACGGGAATGACGGTTTAGAAATCACCTGAAACGAGAAAAAGAACCGAAACCGGATAAGTCGGATTCCCGCACGGGAGGGAAGGACGGGATTTCAGGTTACTGTTTTTGATTTTCTGTTTTGTGGGAATAACGGGATTTTGGATGATGTGCATTTTCGGGAAAACTAAAAACCCTCCGCCGTCATTCCCGCGAAAGCGGGAATCTAGAATTTTAATGCGGCAAGAATTTATCGGAAAAAACCGAAGTTTAAAGACCTA # Right flank : ACGATAAGCGTAATTTCAATCTGCCATATTGTCTTTTCACTTGCCTGAAAACAGATTTCAGCCACCTATCCCTGCATCCGGCGGCTGATGTAGTCGGCAATCAAATCCCGCTTTTCCCAAAAAAACTTCTGCATTTTTTGTTCGGAATACAGTTTGCGGACCAGAGTGGGCAAACCGCTGTGGACGATGGCGGCGATTTCTTTGTTGCCTTTTTCTTCCTGCATTGCCGTCTGAAAATCCATACCCCTGCCTTTCAGATATTCTGCAAGGCGGTTGCGGATGTGGGAATTGAGTTCGATGGATTTGAGCATTTTGCCTCCGTTTTGCGGTAAGGATTTATTCGATTTGTTTATCCGCCTGATTTTATCACGTTTCCCAAGCGGTTTGCCTGTACAATACCGCTTTTCGGCAGGGTGTGGGCGATGATGTTTTCTTGGTTCAAGCTGTTTCACTTGTTTTTTGTCATTTCGTGGTTTGCAGGGCTGTTTTACCTGCCGAGG # Questionable array : NO Score: 4.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-1.05, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCCCGCCTGCGCGGGAATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 24177-22888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZW01000030.1 Neisseria meningitidis strain NM2433, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24176 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 24110 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 24044 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 23978 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 23912 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 23846 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23780 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 23714 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 23648 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23583 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23517 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23451 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23385 36 97.2 30 ............................T....... AATAACAACCATTTTGTTATTTCGATTTTT 23319 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23253 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 23187 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23121 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 23055 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 22989 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 22923 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //