Array 1 365496-364664 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014859.1 Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T)) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 365495 37 100.0 37 ..................................... TGCGGGAGACCGAGGCGACGCTGACCCTCGGTGCGGC 365421 37 100.0 36 ..................................... AGTTAGTTTCGGGTGAGTCGATTCCAGGCAATGCCG 365348 37 100.0 38 ..................................... CAGATCGTGTGCCGAGTGACCTCGGTCGTTCGCTCGAC 365273 37 100.0 37 ..................................... TGCGGGAGACCGAGGCGACGCTGACCCTCGGTGCGGC 365199 37 100.0 36 ..................................... AGTTAGTTTCGGGTGAGTCGATTCCAGGCAATGCCG 365126 37 100.0 38 ..................................... CAGATCGTGTGCCGAGTGACCTCGGTCGTTCGCTCGAC 365051 37 100.0 37 ..................................... GCCAACAAGATCAGCTCCGGTGCCGCCGCCGACGTCG 364977 37 100.0 18 ..................................... CCCGGCATCGTCGTCCTC Deletion [364923] 364922 36 75.7 37 ACT..T.....AA.-.....TG............... GGTGTTCGCGCCTGCGTCATCTCGCTGCGGCTCTCTG T,G [364903,364916] 364847 35 91.9 37 .............-.C............-........ TGATCCTTGTCGATCTTTACGGCGTAAAGTTCAGGTC C [364832] 364774 35 89.2 38 .........-...-.C.C................... CGCCGTCTCGGGTGTCGTGGTTCCGGGTGTCGTTCCGG A [364758] 364700 36 81.1 0 ...A.........-.C.C........T.......GC. | T [364680] ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 94.8 35 GTGGCACCGGCCCGTGAGGGCCGGTGAGGATCGCAAC # Left flank : CGATCATTCCTGGGTGGCCGACCACACCAGCACGGCGATGGACGGCCTGACCACCTGGCTACGACCGCTACGGACCGCAAGACTCGTGGTGATCGAACTCGGTGCGGGGACCGCCGTACCCACGGTGCGGCGACAGGCCGAACTGGCCAGCGCGGCACGCGGCGCGCTGATCAGAATCAATCTGCGGGAGCCCGCTATCCGGCACGGGCGCGGCATCGAGATTCCGATGGGAGCCGCTGCGGCCATCGCCGCGATCGACGAACTGTTGCCGGATCGGCTGCGGGCGGCGGTGGAGACGGCCGGCTGATCAGCTGCGCGGGCCGGTCTCGACTGTTCGGTGTTCTCCGATGTGGTCCTCGCGCCGCGATGCGGTTCGCGCCGCTTAGGGAAGGCAAGCGTCCAACAACACGCCTCACCCTCCCGAACTGAATTCCGGGCGTGTCGGTCAACATTCGGTAACCTTGCCCCGCAACGAACACAATCGCCCCTGCATACGCAGG # Right flank : ACTACGACGGGACGACGAACTCGGCCAGGACTGCCCGGTGGTCGCTGCCGGGCACGTCGAGGACGTCGAAGGACTCGACGGCACAGCGGTTGTCGACCAACACGTGGTCGATGGTCAGCGGCGGCGCGGTGATGGTGCCGCCCGCAGGCCAGGTAGGGCGGAGTCCGTCGCCCGTCTGGTCGGCCGCGTCCTGGTAGCCGGAGTTCAGCAATCGCCGAAGTGGGCCATGGTCGAGGGTGGCGTTGAAGTCGCCTGCCAGCACCCGGATCGGGTCGGCCGAACGGGCCTCGGGCAGGCTCGCGAGTTCCCGCTGCCAGGTGTCGGTGGTGCCGTCGCCGATCGGCCACAGCGGGTGGACCGACACGATCTCGAACTCGCCGCCGTCGGGCAGCGTCACCGCTGCGGCGGACTGGCGATGTGTCGCCGGGATGGCATCGATGCGTTCGGCCTCGTGACGCGAATAGAGGCCCGAACCGGGTGCGCCGTTCTCCGGGTCGATC # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCCCGTGAGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.10,-18.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 1200685-1201380 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014859.1 Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T)) chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1200685 37 100.0 35 ..................................... ACCGACGAGGTCTTGGCTACGCCGTTGGCGGCACG 1200757 37 100.0 37 ..................................... TGTTCGCGCGTCCGCACCTGCACCCGCACCCGCGCCA 1200831 37 100.0 37 ..................................... TTCCTCGACCGAGGTCACGCCCGGTTGGGTCATGAGC 1200905 37 100.0 37 ..................................... TGTTCGCGCGTCCGCACCTGCACCCGCACCCGCGCCA 1200979 37 100.0 37 ..................................... TTCCTCGACCGAGGTCACGCCCGGTTGGGTCATGAGC 1201053 37 100.0 37 ..................................... TCCCTCTCGTTGGTGATCGGCGGGTCGGGTGGTGGGT 1201127 37 100.0 35 ..................................... CGCTACCGGGGTGTCGTGCGGCGCCTCTAGGGCGT 1201199 37 100.0 35 ..................................... GACCCTGTCTGGTCGATCACCTCGGCGGACGGAAG 1201271 37 97.3 36 .......T............................. CTCGTCGCGACCGCGTTCGCCGGAGTCGCGATGCTC 1201344 37 94.6 0 .......................TC............ | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 99.2 36 GTGGCAGCGGGCCTCCGGGCCCGCTGAGGATCGCAAC # Left flank : CTCGCGATAGTGGACCGCTTCGCCGCGCGGAAAGCGCTGCCGGGTGGTGCGACTGTTGCCGCCGCTGAACACGACGAGCGGGAACCACCCGGCCGCATACAGCTCCACGGTGACCGTGGCGACGCCCAAATCGTGGCTGCCCAACGCGATGGCCGCATCGCAGGTTCGAAGTTCATGGCCTAGTTGGTGGTAATCCCAGATCAGCTCCGCCGCACGCCACTGCTGGGCGGTAATCTCCTCGATGGCACCTGCGGGCTCGCGATCACGCGACGACATTGAGCTCCTCTATGGAGATACCTGATCGGCCATGCGACGGTCTGCACGCTTGGCGGTACCGTTCGGCCGCATCATCGTTGGCACCCGGCTGGGCCATGGCCTTCAGCTTAGGAGGGCAAGCGTCGTAAGACACGCCGTCTCAGTCCGAAGTGTATTCCGGGCGTGTTGATCACCGACTGATAACCTCACGGCGAGCAAGAACGCAATACCCCTGGAAAAACAGG # Right flank : CCGAAGGATTACGGTGTTGTGCCTTGCCAGTCGTCGGTGTGGGAACGCACTGCCAAGCCAGCGATGATCTCGTCCGTGATCGCGTTCCCGCGCCTTGCGAGGTCCGGACGCCGCTCGTGAAGCGGAATCGGCTTACCGGGATCCTCGCCGCGTGCCCATGCTGCCCAACGTCGACAGCAGTAAGCCATGCTGTCGGTCCAGTTTTCCAGGAAGTGTTGGCGTGCCGGGTCCGCAACTAGCTCGTCGGTTCGCTGTTGAAGATCCCACTCGAAGTAGTCGGCCCATTCGGTTAGCGCGTCGGCAATCTGTTCATTCGGCAAGGTTGTGGAAGCGTTGGCGCAATGCCAGTCCAAGAAGGGATTGGTGATCTTTGCGATTCGAGGCTTGGCGAGAAGGTAGCGCCTGATGGTGGGCCACCGGCCGGATGCTTGCTCCATGCTTACGGTCGGCTTCATTGGCGCTGGTTGTGAAGTGCGAAGGGACAAGGCTCGACTATTCAC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCGGGCCTCCGGGCCCGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.80,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 1281324-1281537 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014859.1 Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T)) chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1281324 29 100.0 32 ............................. GCAGCCGCCGAGGGGATCACCGCGATCCGTCA 1281385 29 96.6 32 ............................C GATGCCGAGAAGGCCAATGATCAAGAGTGGTG 1281446 29 100.0 33 ............................. ACATGGTCACGGACGACACCCGAGGCCGAGCAG 1281508 29 86.2 0 .C..................T.C.....C | T [1281524] ========== ====== ====== ====== ============================= ================================= ================== 4 29 95.7 33 ATCCGCCCCGCGCACGCGGGGGTGTTCCG # Left flank : TCTCGGATGACCGACGGGGCCAGCGAACCCCGGTCGTAACCGACGAGCCGTACTACGCCAGCACCGAAGAGCTGGTCGCCGAAGCGGACCTGATCGTGCGGGGCCGGATCGATGCGACCCACCGGCAGACCATGGACGACCTCCCCGAGATCCGGGCGGAGGTCACCGTGCTGGCTAGCGTCGGGGACACGGTCGCCGTGGGCGACACCATCGACGTGGCCTACGTGATCCGGGGCGCCGCACCGTCTACCGCCGATGTCGCCGAGGGCGGCGAATACGTGCTGCTGCTCAAGGACTGGGGCGACGGCCGCCGCACCCTGGTCAACAGCACCCAGGGTTCCTATACCGTGGCGGAGGGCCGGGCCATCGCGGGCCAACACAACGAGGTGGGCCTCGGCGGCGAGTTACTTGCGGAGCTAGGGCTTGGTGAGTAGGCGATCCTCGAATTCCAAGTGGTCATAAATCCGGTTACCGGCCGGTAGAACCCCAGGTCAACAAGT # Right flank : CTCCCGGAATGGCCAGCACGCACGAAGAATCCGTGACCCGACGCCACCACACCGCAAACGCCATCGTCTCCACCCATGAACAGGCTGACCGGCGGGCGCGGTTGCTACTGCCGCACCGCCCATGCGGATTTTGCCGTCAAACCAAGGCACAGGGCGCGGGCGGAGAACCCGCCCGCGCCCTGCCTTACTACCTGATCAGCCGCCTGCCTGTTGCCTCGACTGCGCCGCCACCTCGCTGAAGTAGGTGAGCAGCACCTCGAAGTTCTCATCCGAGTCGGTGCGGATCTCGGCCTTGGTGCCGTCGGCGAAGTCAAGCTTGATCTTCCCGCCGCCGGTGAGGAACTTCTTGTGTTCGCCGTCCACGATGTTCTGGTTCAGCACCCACCGGCCATCGTCCCTGGCGAACAGGCCCGCCGCGCCGTTCTCCAGCAGGGTATTGATCCGACCGTTCAGCGCCTGGCCACCCTGTCCCATCATTCCGGAGAGGTTCTGACCAGCGA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCGCACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1312442-1312592 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014859.1 Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T)) chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1312442 29 100.0 32 ............................. TGTGTGCTTCACGCTGCCACCTCTACGATAAT 1312503 29 96.6 32 ............................T GCCCCTTGACGGTCAGGTACCACGCCGACGGG 1312564 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 ATCCGCCCCGCGCACGCGGGGGTGTTCCC # Left flank : TTCGTCGAGATCATCGCAGGCCAGATCGGTCGGATCACCGTCGATGGAGCCATCACCGAGTTTCCACTGCCCGACCGCGACGCCCGGCCCCATGCCATCACCGCCGGGCCCGATGGGGCCTGCTGGTTCACCGAATGGGGCGCGGGACGGGCCGGTCGAATCGATCATGAGGGCGCTATCCGAAGCTATGACCTTCCCGCCGACAAGCCGGAACCACACGGCATCGCGCTCGGCGCCGACGGTGGGCTCTGGATCGCACTGGAGGCTGGCGCGATCGCGCGCGTGACGCCGTCGGGAGAACGTACGTCTGGTCGCTGAGGTTTTGTTCGGGTGGTGAATGTGATGGGGCTGGCGGGCTTTCGAGGGCCGTTGGTCGCGGGGCGGGCGGTCTGTCGGGTGCGACGGTGGCGGTGTGGTCGCGGCGTCGATCGATCTCTAGACTCGAATTCTTAGTGGTCGAAAACCCGGTTACCGGTCGGTAGAACCCCAGGTCAACAAGT # Right flank : CCTGCTCGAGCTAGCCGAGAGCTGCGGCGGTGCATTCGCCCGCGATGACGACATCCGAAGCGACGAACTGTCCACCGGATCCGAACCGCATGGCATCGCGCCCGGCCCCGGCGGCGCGCGGTGGGTGTCCCTCGAATCGATCGATCGCGCGCGTGATGCCGGATTGCCCACCGCAGACCGAGCATCCTGGTGCGCGCGAGACCCAGACGGCCGCGCTTCAGGCCGGGGTTTTCTCGGGGGCCGTGCGCAGCATCTGACGCGCCAGCCCCACCCACCAGACGAAGGTGAAGGCGATGACGGTCGGGTTCTTCACGAACAGCAGCACCGCGAGGTAGGTCGACCTGGTTTCCTCGGCCAGTAAGCCCGCCACGACGTTCTCCGCGAGCAGGTCGAAGACCAGGAATGCCACCGAAAGCAGTGCGCCCTGGATCAGCAGGCTCGGCCAATGCAGCCGGGCGAACTCGGACAGGTTGTCCCAGTGCCACGCGGTGTTGCGCATG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1316441-1316590 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014859.1 Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T)) chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1316441 28 100.0 33 ............................ CCCGGCGGCGGTGATCCTGCGGTGCAACGCGAA 1316502 28 100.0 33 ............................ TGCTTCCGCTCGGTCGGGCTCGACCATCACGCC 1316563 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 ATCCGCCCCGCGCACGCGGGGGTGTTTC # Left flank : CGCCCAGGCCGAGATCCTGGAGGTTGTGCGGGAAAGACCCGTCCGCGGCACCGTCGAACGCAGCTACCGCGTTCGGCAGGAGAAGGCGCGCATAGAGGGCGACGTCCGCGAGACCATGACCAAGGACGACCACCGCAAGGCCTTCGCCGTCTTCAGCGGCGCCCTGATCGGCGACTTCGACCGCTACCTGAGCCGCGAGGACACCGAACCCGCGCAGGAGAACCTGCTCTACCGGCAGGGCGTCGTCTGGGTCACCGACGAGGAATACACCGAACTCGTCGAAGAACTCGAAGCAGCCGTCGAACGCCGTAACGAGCCCGGCGAGGGGCGCACCCGGCACGTCATCAGTCTGGTTGCGGTGCCCGATAAGCCGGTGTGATGACTTGGCGGGGCGGCTGAGGGTGGCTGTGCTGCTCTGGTCGGGGCTCCTGATCGATAGACTCGAAATCCAAGTGGTCGAAAACTCGGTTACTGATCGGTAGAACCCCAGGTCAACAAGT # Right flank : CGCAGCAAGCCGCCGATCGTCGCCTCCAGGAAGCGCCCCGCCCATGCGAGGCGCCTCCTCTCACCACCGACTCCGCAGCCACATCGCCAGCAGCTCGACCAGCATCACCGTGGCGAAGATCAGGATCAGCACCGTGGTGACGACGCCGAAGTCCAGGACTCGGGCGGCGTTGAGCAGGTAGAAGCCGATGCCGCCCGCGCCGACGATGCCGAGCAGGGTCGCGGAGCGGATGTTGGTGTCCAGCAGGTAAAGCGCGTGTCCGACGAGCGCCTTGCCCGCTGCGGGCACGGTGGCGGCGAGGAACACCTGGAGTCGGCCTGCCCCGGTCGCCCGTAGTGCGCGTTCCGGGCCGGGGTCGACCTCTTCCAAGGAGTCGGCGACGAGTTTGCCGAGTAGGCCGATCCCGCCGATGCCCAAGGCGACCGCGCCCGCCACCTCGCCGAGTCCGGTGATGACGACGAAGACGATCGCCAGGATCAACTCGGGAATCCCGCGAATGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCGCACGCGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 6 3824870-3825137 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014859.1 Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T)) chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 3824870 24 100.0 37 ........................ GGCCCCCGCACACGAAGCAGGCTCCCCGGATTCCCCA 3824931 24 100.0 37 ........................ GGCCCTACTGGTCGTGGCGGAAAGTCGAGTGGGTCCC 3824992 24 100.0 37 ........................ GGCCTTACACCAGCGCGGGCGGGAACTCCGGGGCGTT 3825053 24 100.0 37 ........................ AGCCTCCTGGTCTCTTCCTGGTCATGGGTGATGATGA 3825114 24 87.5 0 .........A...........CG. | ========== ====== ====== ====== ======================== ===================================== ================== 5 24 97.5 37 GTAAGCCCCGCGCAGGCGGGGGTG # Left flank : GTGGCCAGCAGCGCCGAGGCCCGATCGCCTAGACCCACCAGGCCGGGTCCCAACGCATACCGCCGGGACGGAAGTTGCCGCACGTAGCCCATGGTCGACAGCGTGCGCATCAGCCGATGTGTGGTGGGCAGGGCCAGATCGAGGCCCTCCGCGAGTTCGCTCACCCCGGCCTCCCCACCGTGCGCGGCAAGCCATTCCAGGATCGCGAACGCGCGGACCACCGATTGCACGGGACCGGGCCCGGTCTCCTCGGCCATCGATGGGCCTCCCTCGGGTGAAACGGAAAAGATCGACCACACTATCCCAGGTCATCGGTGTCGTGCCTGGAAGTTCCGACTCGGTGCCTGTGGTGTGGTGCGGTGGCTTCGAGTTCGTCGGCGACGATCGACGAGCCGTCGCTAAGATCGTCATCATCGAACGCTTCGGAGACGTCGTGCAGCACATCGACAACGTAGATCACGAACGCATCACGACCCGCTGACGGTGCAGGTCAAAAAGGG # Right flank : GCCGAGCACCCGAGGCAATATCTCGATCAGCCTGGTCACCCACGCCCGAACAGGCCGCGACGGACCTACCCGACCCCACTCAGTCCAGGCTGTCGTACGCCGCGACCGTCAGGAAATCCACGAACGGGTCGGTCAGGGCGACATGGCGGAACAGCGCCTCGGCGTCCGTCCACCGCCCGGCGGCGAAGGCCTCCTCGCCGATCTCCCCTCGCACCCGGTCGAGTTGTTCGGTGATGACGGTGTCGATGAGTTCCGGTGTGATGGCGGTGTCGTCCTCGAGGCGGGCCCCGGTGTGCACCCACTGCCAGATCAGGGATCGGGAGATCTCGGCGGTGGCCGCGTCCTCCATCAAACCGAAGATCGCGACGGCCCCGGAGCCACGCAGCCAGGATTCGAGGTAGCGCAGTCCGACGGCGACGTCGTTGTGCAGGCCTGCCGTGGTGACCCGGCCGGGAACGCTGGCCACGTCCAGGAGTTGCCCGGCGTCGACGTCGACGTGT # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCAGGCGGGGGTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 7 3877174-3877384 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014859.1 Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T)) chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3877174 28 100.0 33 ............................ CTGACACCCCCGGTTACCGCCGGGGGTGTCGTT 3877235 28 100.0 33 ............................ GATCGCCGCGTCCCGGATCGCCTCCAACCTCGC 3877296 28 100.0 33 ............................ GCCATCCGCCAGCCAGTGCCGAGTGATATCCAG 3877357 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTCCGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : GCACCGCGCTGTGGCTGCTGCAGATCCCGATCGCGGTGCTGCTGATCCTCCGGCTGGTCTCCCCCGCGCGACGCGGCGACAAGCTCGGCCGAGGCACCCCGGTCTCACACGTCATCCGTCGAGTCGTGGCCGTGCTCGCGGTGGTGGCCGCGATCGGCGCGATCCTCGCCGTGGTGATCACCGGCCGCGACGGCGGTCGGACCCGGGACGTGACGGGTGCAGCGCCGTCGGTGCTGCCCTGGATGGTGTGGACCGGATTCGCGGTCTTCGTGCTGGGAGTGGGTGTGGCGGTGCTTCTGGTGCGCCGCGCGGAACGCGCCCGGGTCGCGGCACGGAAATCGCCTTCGGAACCGGCATCAGAGCCGGCCGATGCGGAGTAGGCGGCCCGCTCGGATGGCTTGCTCGCGGGGCCGTCATAATCGGCCTGTGGTTGGGTCCTTTCCGCACGCTCCGGCGATCACGAACACATAACGCGCTTCTAAGATCGCAGGTCGGAAAGG # Right flank : CGCCAGCGTCACCGACCCTGGCGGAGGTCACTCAACCAGCCGCCTCACCGATCCGTGGCAGGCAACGGCTCCGGTTCGGCTTTCGGCTGCACGCGCCGCATCGGTAGGCCTTCCTCGGTGGTGAGTCCCTTCTCGATGAAGACCACGTTGCGGTGGAAGTACACCCCGGCCACGGTGCGGTCCGCGTAGCTCGGCTCGAAGCCCGGTGCCTGCTCGTACTCCGCATGGTGCAGGCCGTCGAGGAGTGTCTTGAGGAAGCCGACGGTGGTGTTCTCGTCGTTGAACTCGGTGTTGCTGCCGCCGAAGTCCGGCCAGTAGGAGGTCTGCAGATCCTCGATGACGTAGAAGCCACCCGCCCGTACGTGCGGGAACAGTAGGTGGAAGCTGGCGATCACGTCTTCGCTGCGGTGGCTGCCGTCGTCGACCACGATGTCGAAGGGGCCTACTTCCGCGCCCAGGACCGCCGCCAGCTCCGGATCGGTCTGATCGCCCTGCACGGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 3929220-3928451 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014859.1 Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T)) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3929219 37 100.0 37 ..................................... GACCAGGCAGCGGTTAACAAGCTCATCTCGGACCGGC 3929145 37 100.0 38 ..................................... TCGTAATGCTGGTCTCGCCCCTGCCTGTGACGGAAGGG 3929070 37 100.0 36 ..................................... CTCGGAGGCTTGCAGAGCCTCATAGGCGAGACCAAG 3928997 37 100.0 35 ..................................... GCCAACACCATCTGGCGCACGAGCACAAGAACCCA 3928925 37 100.0 36 ..................................... CACCCCAACCCCGGGGCCGCGCCCGAGGGCACGACG 3928852 37 100.0 36 ..................................... CACGGAAGCCGTAGGTGCGCGGTGCGCACCAGGCCC 3928779 37 100.0 35 ..................................... CGGAGCCCGAACCGGAGTCGCTGGAAGTCCTTCCT 3928707 37 100.0 38 ..................................... TCCACCGCGACGAACTTCGACCTCCACAAGCCGCGTAG 3928632 37 97.3 35 ................C.................... AATCCAGACCACGCGGTAGGGCATCCCATGCTTGG 3928560 37 94.6 36 ......T.........C.................... ACGAGTGTCGTCTGGCGAATCGTGGTCGGGCACCCC 3928487 37 97.3 0 ......T.............................. | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 99.0 36 GTGGCACCGGCCCTTTTGGGCCGGTGAGGATCGCAAC # Left flank : GGAGAAGACCACCTCGAGTGCCTCGGGCAGCCCGCTCCACAGGTCGACCACCATCTCGCCGTCGACATGCACGCAACACTGCGCGGTCTCGGTACCGTCATCGGACAGCGAACGCTCGAAGGCCTCGGCCACGCGTTGGTAGCCGGCAACGACTGTTCCATCGGCAGAAGGCGACATCGCGCCATTTTGGCAGGTAGGCGCCCTCATTCCGGTGCGACGCGGCGAGTGGGAGTGTCGCGGTGACGGCGTTTTCAGCGAACGTGTTCGGACCGAATCGAGCGCTGGGCGCGTTCGTGAAAATGGTTCGTGCGTGGCGCTTCGGCGGGGGTTGTTCGGCGGTGTGTTTCGCCGCCGGGCCCGGTATCGCGGTGCTCCAGGTTGCTTAGGGAAGGCAAGCGTCGTGCGACACGCCGGGGCTCACCCAAGTTGACGCCGGGTGTGTCTGACACGGCTCGATAACTTCGAGGCCCCGCGTAATACGATGTGCCTGTTGAACCAGG # Right flank : GGCGACCGCTCGCGGCTGGGACCCCGGCGGTGGTGCACGATGGCGATCTGCGGCGCCGGTTATCGGCGCCGCCAGGCCGCGAGCAGTCCGCCCTGACAGCGGAGTGAGCGGCATGTCTTTGATGCCATGCGATTGCTGAGATATTCCGCCCTCGCGGCGCGTTCCCACGATGCGGCCTTCGTTGACCGGTTCGCCGCGCCGCGCTTAGCGTCGATCGCGAGGTTCGAGGGCCCGCATCGTCGATCGCGGCGGGCCGCCGATCGAGAAGATCTAGGTGCGTGCCGATGGTTGACGTCTCGTTGGATCTGCTTCAGCTTCGCACCTTCGTCGCCATCGAGGACTGCGGAGGTTTCGGCCGCGCGGCCTCGGTGCTGCGCATCAGCCAACCCACGGTGAGCCAGCATGTCCGGCAACTGGAACGACGATTACGCCAGACCCTGGTGGAGAAGGACGGCAGGCGAGCCCGGTTCACCGCAGCGGGCGAGCGGCTCCTCGTCGAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCCCTTTTGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.20,-18.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 9 3935165-3935378 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014859.1 Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T)) chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 3935165 28 89.3 35 ......................T.A.A. CCCCAGCTCAGCAGCTCGAACGGCTCGGCGCTGAC 3935228 28 82.1 31 .....T................A.CCT. GCCAGCTCAGCGGCCTCTTTGCCGTACTCGC T [3935249] 3935288 28 100.0 35 ............................ CCGCGGATCTACGTCCCTACGGCAACAGCCGCGTG 3935351 28 67.9 0 ...C....T..AGA.......C..AC.A | ========== ====== ====== ====== ============================ =================================== ================== 4 28 84.8 34 GTCTGCCCCGCGCTAGCGGGGGGGTGCG # Left flank : CCTGGCCCGGATCCTCGCGCGGTTCGGCAAGGAGTTCAGGGCGGCTTCGGTGTGGTCGGCCTGCGCGGTGAGCCAGCTTCGCAGCTCCGGGCCGTCGGTCTCCATCCACCGGTAGGGGTCGCTCAGGCGGATGCCGAATCGGCTCTCCTCCACGGTATCCACCCGCGCCACGGGCGGGCTGTCCTTCGACGATCCCGTCATACGACGTCCTTCTCATAGCGCGGTCCCGCGTGCGTCTAGTCGAGATCGGCACGGGTGCTGGCGAATGTCGGCTGATTCGAATCTAGCCGGATTCTGTCGGCCGGGGGGCGACGTCGAGTGCTCGCCGGACAATAGGATTCGCGTTGGTGCTGACGCCGTCGGGAGGCTGGGCATTGCGCGGATCAGCCGCGGAACACGGTCGCGGTGTTCTTGGATTGGCGCAACGTCGATCGATGTTCACGGTTGCTCCACAAGGTCAAGAAGCGATGACGCCCTTCTGAACGCCAAGGTGACGAGAG # Right flank : ACGTCGCTATTGCGCCGCGAACACCGGCTATCACTCGGCGACGCGGACCAGCATCTTGCCGATGTTCTCGCCACGCAGCATTCCGATGAAGGCGTCGACGGTGTTCTCGATGCCATCGACCACCACCTCGTCGATCAGCACCGTGCCGTCTTGGACCCGAGGGACGAGGAAGCGTTCGAATTCCGGGATGGAATTCAGGTGCCTGTCGGCGAGATAGCCCTCCAGTCGCAGGTTCTTCTCGACGATGTCGAAGAGGTTGTGTGGTGCGGCGGGCGGGGTCCGCAGATTGTTGTACTGCGCGACCGCGCCGCAGGCGGCAATGCGGCCGTGATCCTTCATCGCGGCGATCGCGGCTTCGAGGTGATCGCCGCCGACGTTGTCGAAGTACACGTCGATCCCGTCGGGGGCGGCTTCGGCGAGCTGTTCGGTCACCGAACCCGCGTGGTAGTCGAATGCGGCGTCCAGGCCCAGTTTCTCGGTCAGGTAGGCGATCTTCGCCG # Questionable array : NO Score: 3.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.24, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGCTAGCGGGGGGGTGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 4575058-4574297 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014859.1 Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T)) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4575057 28 100.0 33 ............................ GGGAGGCTCGGAGTTGTCGTGTCGCCCACCGGG 4574996 28 100.0 33 ............................ GCCGGAGAATTTCCAGCCGGCCGTGATGGCGGA 4574935 28 100.0 33 ............................ CGGGTGGACGGTGAGGGTGGTGATCGTGGCGGC 4574874 28 100.0 33 ............................ CCCGCGCCGAGTGATTCCGTATATTGCTACGTC 4574813 28 100.0 33 ............................ GGCTCGGTGTGGGTGTACGGGACCTCCGGGAAC 4574752 28 100.0 33 ............................ GCGGCTGTCGAACGCGGAGTCGTCGCTGGCCTG 4574691 28 100.0 33 ............................ CTGGAATTGATTTTCGGGCGAAAGAAGGTCTGA 4574630 28 100.0 33 ............................ GCCGTTGCGGTACACGGTGATGCCCCGGATCGA 4574569 28 100.0 33 ............................ GGGGGTGGTCGGTCAGCTGTCGATCGAGGCGTC 4574508 28 100.0 33 ............................ GGCAGAGCGCGCCGGGAAGGCCACCGACGACCC 4574447 28 100.0 34 ............................ AGTGCTTTCGTTCTTGTGCTCCCTGTGGTGCATC 4574385 28 85.7 32 ...C......T.T.........G..... AGCCCGGCTGGGTGACCGCACTGCCACTTGCA C [4574362] 4574324 28 75.0 0 ...C....G.GA.A.........AT... | ========== ====== ====== ====== ============================ ================================== ================== 13 28 97.0 33 GTCTGCCCCGCGCGAGCGGGGGTGAGCC # Left flank : AGAACACGATGCATCGACGCCGGGTGAAGGTCGCCGCCAGTTCGGGCCTGCACGCCCGACCCGCCGCGCTGCTGGCCAAGGCCGCCGCAGCGCAGGGCATCCCGACCACCATCGCGAAGGTCAGCGACGGTGTGCCGGGGGAACCGGTCGACACCGCAAGCATCATCGGCCTGATGACCCTGGGCGCCCACCAGGGCGACGAGGTCGAGATCGCGGCGGACGAGGAAGCCGCCGTGGATGCGCTGGCGGAGTTGGTATCCCGAGACCTCGATGAGGATGTGGTGCTCCGCTGAGGCGGTGCTATCGGCCGGCGTCGGGGGTTGGGCATTGGCGAACCCCTGCGCCGGTCGGGTCGTGGCGGCTTCGGTATAAAGAGATCGATACGGCTGAAGCTGGGGAAGCGAGCACTCGTGTCGGCCCTGAGCGATGTGGTGGCGTGGAGCGGCACTGTGGATGGTCACGAACTGGTCACGGCGCTCTGACGTCGCAGGTCGCGAAGG # Right flank : AGCTCAACGGAAGTCATATCCGCTCGACGGTTGTTATCGACACGATCGGCCGAACCCGCTCAACGCGAGTCATCAGCGAACCGGGCATTGACCGGCCCTGGCACCGCGTGCCCTCCTCGGGCGGGGCGAGGGCCGTCCTGGGGCAGCGGCAGGTCGGGACACGCCGAATGCGCTACGAGTAGCGCTTGCCGATGCAGGCCTTCACCACGTTCGTCTTCTCGCCCATAAGAGGCAACCGGTTGGCCGACAGAGTCGGGACGACTGCGAAATTCACGACGAGGCTGCTCACGGTTGAGGGTTAACGTCATCGGCTGCCCACTCGTGCACCATCTGCGAGCCTCGTCGAGAACTTCGTCCACTGTGTTGGACGGAAACTCGCTGGTGATCGGAAAATGCGGCGAGGAATGCCCGCACCTGCAAGTAATCGTCGACGCAGTTATATCTGATCAGCCGCGTAGCCGACCAGCACCAACGATGGCCCGAGCAGCACTTCCGTGCGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGCGAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 4628996-4628724 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014859.1 Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T)) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4628995 29 96.6 32 ............................C GGGCGCGGGTGAGCCGTCCGACGCAGCGCGGG 4628934 29 100.0 32 ............................. CACCACGGGAGCCGAGTTGTCCCTGCAGAGCG 4628873 28 96.6 32 .................-........... GCGCTTCATGTCGACCTTGCCGACGTTGGAGT 4628813 29 96.6 32 ............................G ACACTCCGGCTCCGGCCGCGAGCACGCATCAC 4628752 29 72.4 0 .....................CACCCATA | ========== ====== ====== ====== ============================= ================================ ================== 5 29 92.4 32 GTCTGCCCCGCGCACGCGGGGGTGTTCCT # Left flank : CGGTGCCCCGAGGCAGGTGCCACACAGCAGCACCTCGCTGACGCTCGCCAGGTCCACATCGGACTGCGACAGCGCCAGCCCGCATCGGTGCGCGCCGAACTATCGAACCACAGCCAGCCGAATGGTTCCTGTGTAGAGATCGGGATCGGGCTAGAGGCTGCGGACTGGCGGAAATCCAGCCGTAGTACCGGCACCAACGGCGGTTGCGTCGAGATCGGTCACGCCTCCGGACTCGTCGGCATCCGCGACACTAAGAACCGTGCGGGTGGCACGCTCTCCGTGAGCGGGACAGCGTTCGGCTCTCTAATCCTCGCCATCAAGGAAGGCAACCTTCGCTAGGCCTGCGTGAGTGCGTTGCCGGACCGTCGATGTCTAGTGGTTCGAGCGTGTTGCTCGTCCTCTTGGTCGAGAGTTCGATGGGCTTCAATTCTCAGGGCAGGGCTCAGAACCTAGTGGACGAAAAACCTGTTACCCGCCAGTAGAACACCAGGTCAGGAAGT # Right flank : CACAACCACAAAGTCCGCCAAGCAAGATCATCGGGATCTGTGCCCCACGTCACTTCCATCTCTGTCAGGTTTCGCCGGGCCACCTGGTCAACACGGTGTATCCAGCAAGAACGGCAAGGGAGTGCATCGTGGAACATCGTTTCGATCTCTTGAAGAATCAGGGTTCCGCCAAGTCGTTGCGGCACCTGGTTGCGGCGGGGAAGGCGACCCTTGAGTCGACCGTGCCCCCTGAGACGCAGGAGTTGGTGCGCATTCGGGTCAGCCAGATCAACTCCTGCGCCTTCTGCACCGACATGCACATCAAAGAGGCGCTCCACGCAGGGGAGGACGCCCAGCGGCTCCACCTGGTCTCGGTGTGGCGGGACGCCAACGTGTTCACCGAGGCCGAGCGGGCGGCGCTGGAACTGGCCGAGCAGGGCACCCGCATCGCCGACGCGGCGGGCGGCATCACCGACGACGCCTGGGCGAACGCCGCCAAGCATTACGACGAGGAACAGTTG # Questionable array : NO Score: 3.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGCACGCGGGGGTGTTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 12 4913037-4912480 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014859.1 Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T)) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4913036 37 97.3 35 ..............T...................... ACCATCGACCTCTCCGATATGAACGGTGCCAGCCT 4912964 37 100.0 37 ..................................... CCTGTTGGCCGCCATCGACCAGGCGGCCCCGATCCGC 4912890 37 100.0 38 ..................................... GCGCTCCCCCGCCACGGATACCGCTCGGCCACCGGCGG 4912815 37 100.0 37 ..................................... GATTTTACTGCCGTTTGGCGGTCGTCGGATGGCGGTC 4912741 37 100.0 38 ..................................... ACGCACTGCTGCCCCACCGGCTGAGCGCACGACGGACA 4912666 37 97.3 37 ..............T...................... ATCGGGCACGCTCTGGCCGCCGACGGGGTGACGTCCT 4912592 37 81.1 37 ...T..........T.A.C.......GA.......C. GACGTCCGCGTAACCGTGGTGGAGTCTGCGGTTTTCG 4912518 37 83.8 0 .C.A.....C...CA..........A........... | C,A [4912487,4912502] ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 94.9 37 GTGGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Left flank : CGGCGAGCGCCCTCCGCCTGTACCGACGCGAAGCCGTTGTCACGCAGCACGCGTAGATGTTGGGAGACAGCAGACTGGGAGATGCCGAACTCGGTCCGGATGACCTCCGTGACCGCGCCGGAGGTCCGCTCGCCATCGGCCAGCAATTCCAGAATGCGCCTGCGCACGGGATCGCCGAGGACGTCGAACGCGTGCACGACGGTGACCGTAACGGCCGCTGCTTATATAAGTCAAGGCTGCTATTTGGTGTGCCGTGCACTGTGTTCGGCCGCTCCCGGCGTTCACGGCTCAGCCCGCGGTACCAGCGCTCGACCTCGGGTGGCAATGGTTTGATCGGCTAATCACGGCTCATCCGGTGCCAAGATCGTTTCCGTGGGCGCGCTTAGGGAGGGCAAGCGTCTGGCAACACGCCGCACCTTCCCGAACCGCATCCCGGGCGTGTTGGTCAACATCCGGTAACCTTGCACGGCGTTGAACACAGTCGTCCCTGCACACGCAGG # Right flank : GCATCGGCGCTGCCGATCGAATCATGCAGGCTTAGATGGACGCGCAGTGAAAAGGACACCCGCCCCCTGCCTTGGGCGGGTGTCCTTTCCTCGACCAACACCGTCGGTGGTCGTCTCTGGTGGGTCAGGGCTGTTCCGTGCGGCGCTGGTGCGGCCGCTGGAGGACCGCCGTGGCCTCGTGTCCGCCTCTACTGGTAGGAGATGTCCGATTCCTCGTAGAGGCAGTGCTGCCCGTCGGGGCCCTCACCGGTCTCCTCCGGTTCGTCACCGTTGTCGTTGCCCTCGTAGCGCTGGCAGATGGTGATGTCCTGGCCGTCGTCACCGATGATGGTGATGTTGGACAGGGTTGCCGTGTCGCCGTAGTTCTCGTTGATTCCGACGAGCCGGTCCCCTGGGGTGCGGACAGTGATGTCTTCGAGCACGACGTGCCGTTCGTACATGCTGCTGCAGTTGCCGCACGACCGGTACAGCGCGCCGAAGTCCTCGACCTCGAAGTTCGA # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.70,-18.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 13 5411901-5411446 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014859.1 Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T)) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5411900 28 100.0 33 ............................ CCCTGGAGGACTTCGCCGGGGCTACTACGGAGG 5411839 28 100.0 33 ............................ GCAGACGTGCACGATCCACTACCGACGCTGTCC 5411778 28 100.0 33 ............................ TGCGACGTGCGAAGCGATCTGCAAACCGAGGAC 5411717 28 100.0 33 ............................ GCTGCGTCTCGCGGCCTGACCGACCACACACAC 5411656 28 96.4 33 ............T............... CGAACACGGGCAACGCTTTATCAACGCCGAAGC 5411595 28 100.0 33 ............................ GCGCACGTCGACAACTACACGGAAGCGCTTACC 5411534 28 96.4 33 ......................A..... CCCACCGTTGTGGGATCAGAGCTGTGTCGGTGG 5411473 28 96.4 0 ..........................A. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.6 33 ATCGGCCCCGCGCATGCGGGGATGGCTC # Left flank : TCGAACTGCAACCCAGGCTCGTCGTATACCTCCTCGATGGCGTTCTGCGTGACCACGGCGGTGTTGCAGATGGGTCTGAGCGTTGAGGAGGCCGTGCGGGCGGCCACCTGGGGCGGCGCCCGAGCGTTGCGTCGGGAGACCGGCGACGGCGCGGTGGGTGTGCTGCGACCGGGCGCACGGGCCGACGTCCATGTGCTGGATGCGCCCTCGGCGACGCATTTGGCTTACCGGCCGGGGGTTCCGCTGACGCATGCGGTGTGGCGGAAGGGTTCGCGGGTGCGGTGACGGGCTGCGGACCCACTATTCGAGCTTGGCGAATCGCTCCGGTGGCGAGGCGTCGAACTTAGGCGAAGCGGTCCAGCGCCGTTCTGCGCATCAAGGATTTACCGTGACGGTCTGGTGCTGAGCTGAAGGGCAGCGAAGTCACCTGTCGCTCCTGTGGCGTGGATCACGTGGTAATTTCATGGGGTGGCGGCAGGTAAACCTGCAGGTCAACAAGT # Right flank : TGGAAAAGGTGGACCAGAAAAACGACGATGTCATCGCGAGCCCGTGCGGTGAGGCCAAGATTCGCGCCACGTCGGAGCGGAGTGAGCAGCCATTGAATCGGACGTCATAAGAATCGGCCTCGGTCCGAACGCCGCCAGCCCGACAGCAACCGCGCCATCGCCTGGAAGGGGATGGCCTGCCCCTTGGCTTGATCGACGGTACCGACCAGGTGTAGGTCGAGTTCCGGACAGTGGAAGAGCCAGGTCCCGGTCGCTCCCGAGTGCCCGACGAGTGTGAGAGGTCGGCGCGTCGGCGACACGAGGCGGCTGACCTGGAAGAACATGGTGCCCATTCCGTACCGGAGGATGGGGATGTTGCGGAGCCGGTTGCGTCGCTCGGTGAGCACCTCCGACGTGCGGGCGTCCTGGAAGAGCGCACCGCCGAGTAGCGCTCGCTGAAAGGTGAGTAGATCGGCGGTGGTGCTGAACAGGTCGTTGGAGGACTCGATCAGCGAGGTCAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCATGCGGGGATGGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 14 5551056-5551449 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014859.1 Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T)) chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5551056 28 100.0 33 ............................ CGCCCACGCGCCCTTCTTCGTGGGGTCGACCTG 5551117 28 100.0 33 ............................ GTTGCTTGCGCCCAAGTCCATGGGACCTAATCC 5551178 28 100.0 33 ............................ CCGGGCAGGGGGCCGCCGGTGCCCCGGCACGGG 5551239 28 100.0 33 ............................ CTCGCCGTCGACCATCACCCTGCGAGATCCACT 5551300 28 100.0 33 ............................ GTCCTTCCAGGTCATATAGGTGACTCGGTGCGC 5551361 28 100.0 33 ............................ GTTCCCCGCTTCGATCTGGTCGACCTTGGACGA 5551422 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTCCGCTCCGCGCAGGCGGAGGTGAGCC # Left flank : GGCTCTCCACCACCGACCACGTGGTGCCCGAAGGCCATCAGCTCGCGCTGATCATCGGCGGCAGCGACTCCCGCTACCTCCGAAACCCCGGCGGCACACCCGCCCTCACGGTCGGCCTGCGCGGGACCAGCGTCGACGTGCCGCTGGTGGACGGCCAGATCCACTTCGAACGGGCCCGCGAGGAACCGCCGACGGTGCGCGAACACCGCGTCCCCGATGAGCCGACGATCCTGATGAACGGCGACCAGGTTCGGCGTTAGTCAGGGATTGAGGTTGTGGGCACGCGGGCCGTCGCCGATTTCTCAGCGGCGGTTCGCGTGCTTTTCTCGTTGCTCGGTGCCCAGCCTGGCGAGGCGCAGGCTACGGTGATCACGTACAAGCTGAACTGAATACGCACCGACATCGATGGCAGGGAAAAGCTGAGATGGCGTCGACCCGAGCAACGGAATCACCAGGTCAAGAACAGATAACGGCCTTCTGAAACCGCAGGTCGCGAAAGG # Right flank : CGCCGTCCTTGTCGTTGTTTCCACCGCAGTTCCGGTCCGCGAGACCGGAAGCACACCACCTCGATGTCAGCCCGGCACGTCCATCCGCTGGGTGCCGATGACCGACAGCAGGCGCAGCGCTTCGTCCGAGGATGAGCCGGGGGCTGCGGTGTAGAGCACGACCTGTTGGTCGGTGTCGGTGATGTCGAAGCCGTCGCAGTCCACGGTGATCGCGCCCACCAGCGGGTGGTGGAAGGTCTTCTTGAGCGCGGGTGCGGTGCAGACGTCGTGGGATTCCCAGAGTCGGGCGAACTCCGCGCTGCCCGCGAGGAGTTCGGCGACGAGTTCGTGGATCTGCGGGTCGTCGGGGTAGCGGGCCGAGGTGGCGCGCAGTCGTCGGGTAGCGGCCAGCGCGAATTCCTGGACGTCCGACAGGCCATACGCACCGGCGTCCGGACGGAGGAAGACCCAGCGGATCAGGTTGCGGTCGCGGGGCGCCAGGGCGGAGAAGTCCTCCATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAGGCGGAGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 15 5553452-5553784 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014859.1 Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T)) chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5553452 28 100.0 33 ............................ ATGGGGCTAGTGCGGTTTCGTGGGGTCGGTCCG 5553513 28 100.0 33 ............................ GCTCGCGATTCCTTTCCGGATGTACCCCGGATC 5553574 28 96.4 33 ......C..................... GTCCCTGGCGCGTTGTGCGCGGGATTTCGTGGC 5553635 28 100.0 33 ............................ ACCGCAGTTGATGCACTCGTCGGCGGATTCGTC 5553696 28 100.0 33 ............................ GCGTCCGCTGAGTCCGACGTCTGACACGCCGTG 5553757 28 92.9 0 ........................T.G. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 33 GTCCGCTCCGCGCAGGCGGAGGTGAGCC # Left flank : GGCGCGATGAAGCGGGCCGTCAACAGCCTGACCGAATCGGCCGCCGTCACCTATGGACCCGAAGGCATCCGGGTCAACGCCGTCGCTCCGGGCACGACGCTCACCGAGATGATCAAGGGCTGGGAGGAGAACACCCCGGGCATCGTCGACCAGCTCAACGCCCAGACCCCCTTGGGCCGCGCCGCCCAGCCGGACGAGGTCGCCGAGGCGGCAGCCTGGCTACTCAGCAACCGCGCTTCCTATGTGACCGGTGCAGTGCTCCGCGTCGATGGCGGCGCGCGGGTGTAAGACGACGGTGTCGGTTCGGGGCGGCTTGTTCCCGTGCCGAGCCGACACGGCCGATCTCCGTGCGCGGGTGGGCAGGCTACGGTGAACACCGCACCACAACTCAAAATCAACGGCATCCGTGGCAAGGGGCTGCTGAGATGGCGCCGACCCAGACAGTGAAATCAGAAGGTCAAGAACAGATAACGGCCTTCTGAAGCCGCAGGTCGCGAAGG # Right flank : CGAACGACAGGAATGCGTTCGCTCGGTCGGCCGAGCGGCGTCGGCTTCGCTACTCAGTCCGACGCCGCTGGTGGCCGGAGTGTCAACTCATGCGGTCGGTCTTCACCGCGTTGAGGAAGGCGCCGAAGGAGGCCGGGTTGACCATGAGAGTCCCACCGGCCCGGTTCTTGGTGTCGCGGATGCCGACCAGTTCGGACCCGCGCCCGATCTCGACACAGTTCGAGGTCGAGCCGCTGCGGGCGGCTTTACGCCATGTCATGGGGTGTGCGGTCATCATGCTCCTGCTCCGTCTCCAGGCCGCTCTTCGCAGCATAGCCAGGGCTCAATCAGCAAGCTCCGCCGATGATCGATCACCAAGGCTGTTGGATTTGATCGCATTGAGGAAGAAACCGAACGCAGCGCAGTCGACGATAAGAACCCCGCCAGCTCGGTTCTTCGTGTCCCTGATGCCCACCTGCTCAGCGGCATGTCTGATTTCCACACAGTTGCTGGTGTTCTGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAGGCGGAGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //