Array 1 2062029-2061511 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034738.1 Escherichia coli strain L65 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2062028 29 100.0 32 ............................. ACGTTGGTGATTTCGCTGTCGGGATCGGCATG 2061967 29 100.0 33 ............................. GTCGCTGGCTAATCCATTTGTCGAGGCGCAAAA 2061905 29 100.0 32 ............................. ACCTCCTCGTAATCCTGTCCCTGCAGAGCCAG 2061844 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 2061783 29 93.1 32 .A........A.................. CGATACTTCCGGATATCCGCAGTGATGTGGAT 2061722 29 96.6 32 .A........................... GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 2061661 29 96.6 32 .A........................... TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 2061600 29 96.6 32 .A........................... GACGCACTGGATGCGATGATGGATATCACTTG 2061539 28 75.9 0 .A.........C..T....T-.G.....C | C [2061514] ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2089222-2087729 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034738.1 Escherichia coli strain L65 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2089221 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 2089160 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 2089099 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 2089038 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 2088977 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 2088916 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 2088855 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 2088794 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 2088733 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 2088672 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 2088611 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 2088550 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 2088489 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 2088428 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 2088367 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 2088306 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 2088245 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 2088184 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 2088123 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 2088062 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 2088001 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 2087940 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 2087879 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 2087818 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 2087757 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //