Array 1 1710-95 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDM010000001.1 Acidithiobacillus caldus strain 6 Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1709 29 100.0 32 ............................. GCCGCCGTAGCGGTGCAGTCGGCGGTTGGGAC 1648 29 100.0 32 ............................. ACCATTACTATTAGTACGGGTCTTGTAGAACA 1587 29 100.0 32 ............................. TATTCCACCAAGGCGGCCGACGCGCTGGCGGG 1526 29 100.0 32 ............................. CACGCCGGACCGGGGGCCAAGGGGCGGTCTGG 1465 29 100.0 32 ............................. GATCGAGGCCGGCCAGGGGCACTAGGAAAGGC 1404 29 100.0 32 ............................. GCAGCCAGGGAACGCCAGAGGATCGAGGACGC 1343 29 100.0 32 ............................. TATGCGAGCGAAGGGCAACTATTGAAAATAGC 1282 29 100.0 32 ............................. CTCATGATTACTGCATGGGCATTACCTTGCAA 1221 29 100.0 32 ............................. CCAGCCAAGCGAAGCCAGCCAAGCGAAGCCAG 1160 29 100.0 32 ............................. TTCGCGGGCGGTGACGTCCGTCTGATCATCCC 1099 29 100.0 32 ............................. CGTTCATCGCCTGGAGCTTGGGCCACTCGCCC 1038 29 100.0 32 ............................. GTTGGGCGTTCTCCAATCTGGGCGTCAACGTC 977 29 100.0 32 ............................. TCGTCCAGGCCAATCATGGCGGCGACGTGGCA 916 29 100.0 32 ............................. GCTGAATAAGCATGTCTCAGCCGTCGCTCAAC 855 29 100.0 32 ............................. CTCGCCCTGCGTGAGATGGAGCGCCAGCTTGA 794 29 100.0 32 ............................. GTATTTGCTCGCGGCAAGCGACTGGAGCCTGT 733 29 100.0 32 ............................. TAGACAACATCGGCCCAATATTCCGATTTGTC 672 29 100.0 32 ............................. GATGGGAGCCAACGTCCCCGCGCCGGACAGAA 611 29 100.0 32 ............................. CTCTCAGACCTTCACACCGTAGAGCATTATAA 550 29 100.0 32 ............................. TCGCAGACGATGATTTTGTGCCCCGGCGCGGG 489 29 100.0 32 ............................. ACCAGCCCCCGGCGGGCCGCCCGAATCTGCAC 428 29 100.0 32 ............................. GCCGAGGAAGGCCCGGGTCTCGAGGTCACCAA 367 29 100.0 32 ............................. CCAGCCGATTTTATCGCCTCACCAATGGCAGC 306 29 100.0 32 ............................. ACTTCGCGCTGAGAGTCTGTCCGGACTTGGGG 245 29 100.0 32 ............................. GTAAAACGGTCGGCCAGCAGGTTGTATTTAGG 184 29 100.0 32 ............................. GCCATTACTGCAGCGGAATCCGGTCAGACTGC 123 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 100.0 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : GGATGCCGTTCCTCCAGCCATTCCAGAACCTAAGGGACTGGGCGACGCCGGACACAGAGGCGGCTAACCATGGCTTTGCTGGTCGTCGTGACTGAAGTCGTTCCACAGCGATTACGGGGAAGATTGGCGGTATGGCTGCTGGAGATCCGCGCCGGGGTTTATGTGGGCGACGTCTCACGTCGGGTACGGGAAATGATTTGGGAACAGTGTGAAGCGCTGAAGGAAGACGGCAATATTGTTATGGCTTGGCAGGCCAACACCGAGTCCGGGTTCGACTTCCAAACTATCGGGAAAAACCGGCGTATTCCCGTCGATCACGAAGGGTTGCGTCTAGTGAAATTCCTTCCCGTGGAGGAAGAAAGTGGATCGTGAAGTCGCTCTTTAACAATCTGAAAACAGGCTATTTTCATGGCCAACCACGCGCATCCCATGCAGGCAAGAATGCTGGTGGGAAATCGTATCCCGGTTTTCGCAAATGATATCAATCAACTATGATTGGT # Right flank : GTCAAAAAAGAACATGCCTGTTAACCTTTCTCAGCAACAAGCCGGACCGGGATATGTTCCATACAGGCATTGAGCAACCTCAGGGGCAGTTCTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10827-9883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDM010000110.1 Acidithiobacillus caldus strain 6 Contig110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10826 29 100.0 32 ............................. GTGATCTCGGAAAAAGTAGCGCAGGCGAAAGC 10765 29 100.0 32 ............................. TGTTGGACGAAGCCCAGAGCCGGGCCGTCGTC 10704 29 100.0 32 ............................. TGATGCAACGGTATCAGATGGCGGCGCAGAGC 10643 29 100.0 32 ............................. TCTAAGCATAACGCGCCCCTGGATACATAGCC 10582 29 100.0 32 ............................. CCGCGCTCGCATGGTTGATGCTGGGAGGTCCA 10521 29 96.6 32 ............................A GGCAACGGGCAATGCGGGCCGGGTCTGCTCGC 10460 29 100.0 32 ............................. AAATCACAGGGCTCGAAATCCTCAGTCAGTCC 10399 29 100.0 32 ............................. TCGAACGGCAGTAGCGCATCAACAACGGATTC 10338 29 100.0 32 ............................. AGACTTCTGCGGCTGCACGGCTTGTTTCAGGC 10277 29 100.0 32 ............................. GACGTATTGACTCGGATCATGAGCACGGCCCC 10216 29 100.0 32 ............................. AGCCATGGGGCTAGGGCCGCAAGTACGCCGAA 10155 29 100.0 32 ............................. TAACGGTGCAGTCTCCGGTGACTTCGGGAAGC 10094 29 100.0 32 ............................. AGCCTGGGAGTCAGGTCGCCATCGCGAAAACC 10033 29 100.0 32 ............................. AAATCGTCACAGATCCGCCCTCACGGACCGAT 9972 29 100.0 32 ............................. ATGTGCTCGGAAGCCGCTTCGTAGGTACAAAA 9911 29 79.3 0 .........TT.......C..GC..C... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : CAGCTTTCATCTCAGACCTCCTTTCTCTATGCCTCACAGAGAGTTAGAGCTTGATTGCTGAGAATGATTCAGAGGCATGAAAAAGAAAAGGCGCAAAGCATTATAAA # Right flank : CGCTCTGGCGAGATGCTCATCCGTTACAGCCTAACGGTGGAGACGGAGAGGGCGCGGGTGATGCCCTGCCCGCCCCGGCATCTATCGGTGATGACGCTTCCGCCTGCGAGGCTTTAGCTCGATCAGTTCTTGCCTCCGGTCATATTTCCAGAGGCTGTAGGCAAACCAAATAGCCCCCACCTTCACGACGGCACCGAAACTAGCAAATCCTCAGGACAGGATGCTGACGATTTTACCGTGCGTCATGGGCCACCTACTTTGGCCTCTGAAAACAGCCGGATTTCGCTCCCGAGGATATACCCTACCACCTCAGCCCCTTAAGTCGCTTCTGGGGGTGTTTTTTGCCGTTTAGGGGGAATCGGCATCGCAGCGCTTGCGCCGCTTCCGCCGCCATTTCTCTTCCTGCTCTCGGTCGTACTTCCAGAGGCCGTAGGAGAACCAGAGAGCCCCGACCGTAACCAGGGCACCAAAGGCGTCCAGCGCCCACATCACCTCGGCTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //