Array 1 86536-89595 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSRI01000001.1 Bifidobacterium pseudocatenulatum strain TF08-3AT TF08-3AT.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 86536 33 100.0 33 ................................. GCACAAGCAAGCCAATATAATTATCTGATCGCC 86602 33 100.0 36 ................................. CTCCACGGCATCGGCGAGCGCCTTGCTGATCTCGTC 86671 33 100.0 34 ................................. CGTCAAACGGGTGCTCTTCCACGAGGGTCAGTCC 86738 33 100.0 34 ................................. CCCGACAACCTACGATTTTTAAGCAACGAAGTAA 86805 33 100.0 33 ................................. ATGCAGTGACTTTTTATCTTCGGGTTTCAATTG 86871 33 100.0 35 ................................. AACCTTGCAAACGGGTTGATTGGTGTCATGGTGCG 86939 33 100.0 34 ................................. CCGTCATGCTATCAAGGGCGGCTCCGCCGCCTTT 87006 33 100.0 32 ................................. GGATGGCCAGACGTATACAGCAACCGGCAGCA 87071 33 100.0 33 ................................. CAACGTGATCTCATGCAGTCTACTAAAGGCCGT 87137 33 100.0 35 ................................. ACCCCATCACGTTCGGCCACGTCCATCAAAGGTTT 87205 33 100.0 33 ................................. TTCGAACGCGCGTGTATGCCGTGCTCAAGGGTG 87271 33 100.0 35 ................................. GATTGATAAGTATTCCAAGTACGTCACAACTCGCA 87339 33 100.0 36 ................................. TTTTTAAGGTCTGAAATGCGCAAAACGTTTCCGTTC 87408 33 100.0 34 ................................. ACGAAACTCAATTTCGTGCGTGACCAGCTTTCCA 87475 33 100.0 34 ................................. ACGAAACTCAATTTCGTGCGTGACCAGCTTTCCA 87542 33 100.0 35 ................................. CATAAAGTCACCATCCACCAATTCCATACCCTTGA 87610 33 100.0 34 ................................. GCAAGTGGGCGGCTGTACCCACACATGTACGCAA 87677 33 100.0 34 ................................. CCCGATGGCTTGCATGGCGGCTGGGGGTATCTGG 87744 33 100.0 37 ................................. TGATTTTGACTTTACCGATTCCGGCATGGGTCAGAAG 87814 33 100.0 37 ................................. TGATTTTGACTTTACCGATTCCGGCATGGGTCAGAAG 87884 33 100.0 33 ................................. CAAGGATGATCCGGATTATTCCCGTCTCTACAA 87950 33 100.0 33 ................................. ATTGCTTTCAACCGTTTTCACCCCTACTGTTTA 88016 33 100.0 34 ................................. CGAGACAACAGTGAGGGATATCAGCGATCACGAC 88083 33 100.0 34 ................................. TTGACTGTGTACTGTCCGCCACCGGTGGCCGGAA 88150 33 100.0 34 ................................. ATGTATTGGTTGATGCGTAGACTTTGCCGCATTT 88217 33 100.0 35 ................................. AGCTGGGTAACGCCTACGTCGAAAGGGGGCATGTG 88285 33 100.0 34 ................................. TTGCCGGTGTCGGAATCGGTGGAATCCGTCGTAT 88352 33 100.0 35 ................................. GATCAGACTAATGCCGCCTACGGTGCAAACGAACA 88420 33 100.0 32 ................................. ATGCCCTGCGACCCGTTGGAGATCGTCACCGA 88485 33 100.0 33 ................................. ATGCTTTGACGAGATACCAGGTTGACTTGTCCG 88551 33 100.0 35 ................................. TTTGACGTACCATGTTTTTTCGTCAACGTGATTGG 88619 33 100.0 34 ................................. ATTTATCTACGCCGTACCGACGTGGAACAGCACC 88686 33 100.0 35 ................................. ATGTTAGTCAAGGAGGGTATGTACGAGCACGCTAT 88754 33 100.0 36 ................................. ATCGCGCAAGTAGGGAAAGTTGCGCATGGTGTCCAC 88823 33 100.0 35 ................................. GTACTGCCAAGGTCACGCGAATAATCATGATTCAG 88891 33 100.0 36 ................................. ATAAGTGCTGCCATAGCGTTTGAGGGTGCGTGGGGA 88960 33 100.0 35 ................................. GTACTGCCAAGGTCACGCGAATAATCATGATTCAG 89028 33 100.0 32 ................................. ACCGTGCGCCGCTATTCGGCTGGCAAGGCGAC 89093 33 100.0 34 ................................. TGGACCGGCGCGGCATCCACCGCCAACGTGGTGG 89160 33 100.0 36 ................................. CTCTCTTGACTCAGACCTGCGCTATGAAGACGTTAT 89229 33 100.0 33 ................................. ACGGGGGTATTGATTCAGCGTTTGATCGGCTTG 89295 33 100.0 35 ................................. ACGTCGGACAATACCATCAAGCAACAGGCCAACGA 89363 33 100.0 35 ................................. CGGACGATGCCGCTTGTGCTGCGCTTCCTTGGTCT 89431 33 100.0 33 ................................. ACGCAGGTCAGCCCGATCCTCGACCGCATCCCC 89497 33 97.0 33 ....T............................ AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 89563 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 46 33 99.9 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CCGTGGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATCAGTCCGAGCGCGCTGCAGGTCATGAAGCATGAGGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATAAACAGCAGATTCAACAGGCGTCGGCGGAACTCGGCGGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATATCATCGTAGACTACGTTACCGGACTTGCCAAAGCCAGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATAGTAGAGTTTGCCGCACCAACGTCTACGGTGTGCAGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATATCGACGAATGGGGTGGGCTGAAACAACGTGAAGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATAATGCCGTCCGTTCCGCAACCTCACCACAGTTCCGTCGCTCTCCTCATGGAGAGCGTGGATTGANNNNNNNNNNCGTGGATTGAAATTCATATCGCGACACGTTGACCGTGCTCGGATACG # Right flank : TCGGTGTCTGCATCGTTCTGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //