Array 1 760375-758962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIH01000029.1 Xanthomonas albilineans strain REU174 Xal-REU174-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 760374 28 100.0 32 ............................ TAGTGTCCGTCCTGGTCGCGCTCGCCGGCGAC 760314 28 100.0 32 ............................ GTGAGCGGGGCCGAGCGTGGGCACACGCCGGA 760254 28 100.0 32 ............................ TCAACAGACGCATTAGTACATCCGGCCAATCT 760194 28 100.0 32 ............................ GTCGGGACCATAGAAGCCAAGCGTCGGCAATG 760134 28 100.0 32 ............................ GAACGATGCCCTCTTTCTCGTTGCCAACCCAT 760074 28 100.0 33 ............................ AAATCTCGAGGAAGCGGGTTAGCGGTAGTCCAG 760013 28 100.0 32 ............................ AGCGCAGGGTTGTTGTCGATCCACCCCTCCTG 759953 28 100.0 32 ............................ ACGCTGGTGGAGGTGCCGCGCAACGCGTACAT 759893 28 100.0 32 ............................ ACCCGATCCCGTCGGATCAGGCGCTTGGCGGA 759833 28 100.0 33 ............................ GTCATGGCCGCGAGGACGACTTCCTGATCCTGA 759772 28 100.0 32 ............................ AGCGCCTCGCGTGACTTGTCGCCCGAGCGTTG 759712 28 100.0 32 ............................ CGCAAAAGGTCTACGTCCCGGTCACTGTGCCG 759652 28 100.0 32 ............................ AAGTAGCTGCACTGTTACCTGTCGTCGCGCAC 759592 28 100.0 32 ............................ GCTTGCTTAGCATCTGCAAAAGTTGTGCGTCG 759532 28 100.0 33 ............................ CGGTTGTCGATAACCAGGGGCGCATCACCCCAC 759471 28 100.0 33 ............................ CGAAAACATCGGCTTGGTCACCTGTTGCCATAT 759410 28 100.0 32 ............................ ATGCACAGCGTGTTGCCCGGCGCGTACACAAG 759350 28 100.0 32 ............................ TGGACTGTTGGCATGTCGATGATCGGGCCAGG 759290 28 100.0 32 ............................ TTGGCACGCTGGAAACCGTGCGCCGGATGCTG 759230 28 100.0 32 ............................ ATCCCGCTTCCAGTGCAGTTGCGTGGATATGC 759170 28 100.0 32 ............................ AAAGAGGATTACCGATGGCTCACGCACCGGGA 759110 28 100.0 33 ............................ ACGACTGCCCGGCATCATGTGCTCGAGCTTGTT 759049 28 100.0 32 ............................ TGTTGGCCGCTCGATAGCCACTGCGGAATGGC 758989 28 82.1 0 ......................TGTC.C | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.3 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCCTGCACCATCTGATGGCAACCACCTGGCTGCATGGCGTTCGCGACCATGTGACCATCACAAGCATCGGTGCCGTGCCATCCGAGGCAGTGCACCGACAAGTGACGCGTGTGCAGGCCAAAAGCAGCCCTGAACGCCTGCGTCGGCGCGCCATGCGCCGACATGGGATAAGTGAGGATCTCGCCGTCCAACGCATTCCAGATTCGGCGGCAGAACAGTTGCGACTTCCGTTCGTCGTACTGGGCAGCCGCAGCACCGGCCAAACCGCGTTCCCGGTCTTCGTACGGCATGGCCCCGTACAGCAAGAACCCGTACCTGGCGACTTCAGCAGTTATGGACTCAGCCGGGGAGCCACCGTTCCCTGGTTCTGACCCTTTTTTCTTAAGACCAAACCCACCAAGGAAAAACAAACACTTAGCAGCCGCCCCAGAAAAAGGGGTTGGCTGCTTTTCTTTATGCGTTTATCTTTCAAGTCAAAGACTTGGATAATAGAACGCCTA # Right flank : CAGCACTTTCAATCTTCATCTTCATGGCGTTGCGCATAGAAATCTGCTGCCGCTTCGATCAGGTAGGTATAGCGTTTCACCATCGCCTGCCAGGCCTGCGCCTCCACTTGGTGTTCGGCGTGGATATCCTCCGGCACCTCGCTGACCTCATCGATCAACTTTGGGACTTCGTGATTCCACCAACGCAGCATCAGGTCTGGCCGCTGATGCGTGCGAATCAGCGACTCCACCAGCGACTGCATCGCCGCGAATTGCCGCACCGTGCGAATGCGCTGGCCTTCCAAGAAGTGCGTGCGCTCCTGTTGCTCAGCCAACGCCTCTTCCAGGGCATCCAGCCGCTGGCGGAGGTCAGCAGGCCCTCGACCGAAAACTCTCATGCGATTACTCCCCGCCCAGCGCGAGCCGGGGCACCTGCGGTGCTTTCAGCAACAGCTTCTTGAAGTAGCTGTCCTTGTAGTAAAAAATCTTGTTGGCCAGGATCGGATAGCCAATGCCCTCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 764835-764977 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIH01000029.1 Xanthomonas albilineans strain REU174 Xal-REU174-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 764835 28 85.7 32 C.GAG....................... TATGATTGTCAGATCGCGTCCGGACGTAACAG 764895 28 100.0 27 ............................ AGCTGAATGAGCTAATTGGTTCGTTCT 764950 28 71.4 0 ...A.................CTGCGGG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 85.7 30 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TGACCCGGCGGGCCGCGTCCGACAGCCAGGTGGCGTAGTCGTACTTGGAATCTGTGTCGCTATCGCCCTCATTGCCCTTCAGCTTGGCCTCGCGCCGCGCGTCGATGAACGCGGCGATGGCCGAGCGGAAGCGCTCGGAGCGGGTGAGATGTTGCGGGTCTTCTGTCATGTGGAATCCTTTCGTTCGCTGGAGTGAACCTGCATGTAGAATCCCCACGGCAGCAAGCCACCGTGGGGTGTGGGAGGGGTATCCCCTCAAACGGCTCTTCTGAAAAAGTGTCGTGAGAGCACTTCCTGCATCCTTCTTTGCACAGCAGTCCTTTGTGCGTAGGTCCGGGTTCCAACCGGCTTTGCTGCTTCGGCCCGTCATCGTTCACAGCGATGACGGGTTTTTTTTAACCAGCTGTATGTGATAATTTTGTTCGTAGGATTTTATGGCGCATTTTGCTACTCTAGCCAAAATTTTGTGAAATGCAACAACATTGATAGCGGGCTGATTT # Right flank : GCACGGAAGCCCTTCTCATTCCCACGACTTGAAGCCAAGTAAAGGGTGATACCCCCACTTCTTCCCGCCCTTGCCCTCAGGCACGTTCACCGTCGCCAGCCGCTTGGCACAGTCCTGCAACGACAGGTCGAGCTGCTCGGCCTGCTCGGTGAGCAGCGTCATCAGGTCGTATTCGCCCCAGGGCGCGATGCCGGGACCAGGTTCGAGCGCCAGCGGCGCGCACGCACTCTGTTCCACGACCGGGTAGAGTTTTTTGTCGCCGCGATGGTCATCGTCGCCTTCGATGCGATGCAGCACCACGCGCTCCTCGTGCTCATCGGGTAGAAACACCAAAGTGGCCGTTGGCCTCGTGTCGTGACGGAACGGCTGTTGTTGCGGCAGTACGCCGGTCAGCATGGCGTGCGGGTATTGCCATGCGCATGCCGCATCCAAGGAGAACGGCGGGGCGCTGCGCCGGGATGGCGGAGCGGCCTCGCGCGATTTGGGCAGCATGGCCTCGC # Questionable array : NO Score: 3.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:-1.5, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2157938-2158145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIH01000029.1 Xanthomonas albilineans strain REU174 Xal-REU174-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2157938 28 96.4 32 A........................... TGCTGATTGCAGCTCGTCCACGGCTTGTCCAC 2157998 28 100.0 32 ............................ AGAACGGCATGACTTGCATATAGCCGCGCGCA 2158058 28 100.0 32 ............................ TTCGAGGCGAAGCTGAAGGGGGATGCGTTTCA 2158118 28 89.3 0 ........................TGC. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : ACCAACGCAGCATCATGTCCGGTCGCGGATGTGTGCGTATCAGCGACTCCACCAGCGACTGCATCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGTGACAAGGTGGGCTGGCACAAAGACCGGCGTAATGCACATCAACGTGGCTACGGTGCGAAGTGGCAGAAATTGCGCGCCTTCGTCATGCAACGCGATCAAGGACTGTGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCAGCCGTGGCGGTGGACCACATCGCCCCAAAGTCGCAGGGTGGCACCGATCATCCAAACAACTGCCAGGCGATCTGCCATCGCTGTCACGTACTCAAAACGGCGCAGGAATCGCGTCAGGGGCGCGAAGGTGCTTGATGCAAGACAATTTGGACATATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : AATGTTCGGGACATCAACTGGACTCGATGCTGGGTAGGGGGGGCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCATCAATTTTTCGCGCGTGCAAAATGAAAAACTTTTTTTTGAACAGATCCGTGTCAAAGCTAAGCGTTGCAAGGAACTACAAGGCTGACTTGGCGCAGACCGAACAGATCGATGCGACGCCATGGACTGCGGCAGGTCACGCGGACATGACCCCAGCCAAACCTGTAGAACTGGAACCCTATGCGCGGCCGTAAACCTCTGCCTGTGGCAATCAAGAAGATCAAAGGCACGCTGCAAAAATGCCGAACCAACCCGCATGAGCCCCGTCCCGACGGGCAATTGGGTGAGCCACCGGAGTACATGTCTGACATTGCCAAGGAGGCATGGACTTATGCGGTAGAGAACGCACCACTCGGTTTGTTTTCTTCCCTTGATGCCACGGTACTGGAACGCTGGGCCAATTGCGCAGGCCTGTACCG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3344056-3345943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIH01000029.1 Xanthomonas albilineans strain REU174 Xal-REU174-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 3344056 31 100.0 35 ............................... ATCGCGTTGGCGGATTGCGTCACGCCATCTTGCAG 3344122 31 100.0 35 ............................... TTGCAACCGTGGTCGCGCCCGCATTCGGGGCAGTG 3344188 31 100.0 34 ............................... CCAGTGCAGGATATGGGCGGCAGCGACTGGCGAG 3344253 31 100.0 37 ............................... GGCACAGCAGCATGCACTGGCGGTGCAGCGTAGAGCG 3344321 31 100.0 34 ............................... GTGCATGAGTGGGGTTTCCTAACGCAGTCCGGGG 3344386 31 100.0 38 ............................... GTTCGGCGTGTGGCACGGCAGCAACAACGGCGCGCAGG 3344455 31 100.0 35 ............................... GCACGTGGACGGGGAAAAGGGCCAAGAACCTACAG 3344521 31 100.0 36 ............................... CCCAGGCCGACGCCAGTGGCCGCGCCGGCAATGCCG 3344588 31 100.0 36 ............................... GCGCCAGCACCCCCCACCGCGTTGGCGTAGCCGGTA 3344655 31 100.0 35 ............................... GCCTCCTGCATCCAAAAATCCATCCATGCCGCTGC 3344721 31 100.0 38 ............................... TTCAAGTTTTGCTTGAAGGAATCAACTGACTGCGGTCG 3344790 31 100.0 34 ............................... TCGCGAAGCTTCCAGAGCCGTCCGTACCCCTCTT 3344855 31 100.0 34 ............................... CGACATGGCGGCGCATTTCACGGCCACAGCCGAG 3344920 31 100.0 35 ............................... GCTGAGCGGTCCCTCGGCCACCGGCTCGGGCGTGG 3344986 31 100.0 34 ............................... CATTGATCCTCGCAGGAAGCTGCATATGCGCTCG 3345051 31 100.0 35 ............................... ATGACCAACCGCGAACAGCCGCAGCGCGGCCAGGG 3345117 31 100.0 35 ............................... TTATAATTCATCCCTGCACCTCACGCGCGACATCG 3345183 31 100.0 35 ............................... CACGATCTCGCGCAACTGCGCGTAGGAAGCCATGC 3345249 31 100.0 36 ............................... TGATGCAGTCGCTGCTGCACGCGCAGATGGTGAGCG 3345316 31 100.0 36 ............................... TACGACACTTACGAGGATGCGATCCGCGATTGCGTG 3345383 31 100.0 37 ............................... AATATCCTCAAAGAATGGGAATCTCGGGGCACAACGG 3345451 31 100.0 35 ............................... AGTTGTCCGATGACAGGAGCGAACGCTCGGGCGAA 3345517 31 100.0 35 ............................... AAACATCCACAGGCCTCGGGCGGGGCCGTTAACTG 3345583 31 100.0 33 ............................... CGGCGTATCCCGTGATGAGCGCCAGCGGCAGAT 3345647 31 100.0 34 ............................... TCCGTTCTATGGGCCTGAGTCCAGTTTTCCTCCG 3345712 31 100.0 37 ............................... CATCGGCTCACAGCACACGCCGGCCTCGCGCTGCACC 3345780 31 100.0 37 ............................... GGCACAAGCGTCCAGCCATCCGGCACACCCTGCAGGC 3345848 31 100.0 34 ............................... CTTGTCATTTCGCACGCTGGTGGTGGCTAGGCTA 3345913 31 90.3 0 ............A......C..T........ | ========== ====== ====== ====== =============================== ====================================== ================== 29 31 99.7 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATAAAATGGCAGTCGTCACATGATGGTCTTGGTCAGCTACGATGTCAGCACTAGCTCACCGGGAGGCGACAAGCGCCTGCGCAAGGTAGCCAAAGCCTGTCGCGACCTGGGTCAACGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTGGACCCGGCGCAATGGACCGCACTACGACAACGCCTGTGCGACCTGATAGACCCGGACATCGACAGCCTGAGGTTCTACCACCTCGGTGCAAAGTGGGAAGCCCGCGTCGAACACGTCGGCGCCAAACCCAGCCTTGACCTCAAAGGCCCACTGATCTTTTGACGCGAACCCCAAGCGACCGGGAATTCACCCGCAGGTTCGCAAAAAATGCAAACTATTGATATAAAAAAGAAAGCCGACTCTCAGACCCTCCCCCCCCCCGGACACAAGAGCATGCAATCGCCCGGTCGAGATGCGATTCGCGAAAACAGGTTTTTTCCTCAAGCACACGCCAGGCTTTATCCTGACGGGG # Right flank : CGAACACCTTGGATTACTCCACCGTCACCGACTTAGCCAAATTGCGCGGCTTGTCCACATCGGTGCCGCGCGCCAGCGCAGTGTGATAGGCAAGCAATTGCACCGGCACGGTGTGCAGCACCGGGCTGAGCAGGCCCGCGTGACGCGGCGTGCGAATCACGTGTACGCCTTCGGATGCGTGGAAATTGCTGTCCTGATCGGCGAAGACGAACAGTTCACCACCGCGTGCACGCACTTCCTGCATGTTGGATTTCACCTTTTCCAGGAGCGCATCGTTGGGCGCGATCACCACTACTGGCATGGTCGCGTCCACCAACGCCAATGGGCCATGCTTGAGTTCACCAGCGGGATAGCCTTCCGCATGGATATAGGTGATTTCCTTGAGTTTGAGCGCGCCCTCCAACGCAATCGGATAATGCAGTCCGCGACCGAGAAACAGCGCATTGTGCTTGTCGGCAAAACGCTCGGCCCACACCGCGATCTGCGGCTCCAGGTTGAGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 3558510-3558362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIH01000029.1 Xanthomonas albilineans strain REU174 Xal-REU174-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3558509 28 96.4 32 A........................... AGCATTGTGCTGGACGCAAGCAATCTGGTCGT 3558449 28 100.0 32 ............................ GTCAGCCCTGCCATGCGAAGCACTGCGCGGAT 3558389 28 89.3 0 ........................AGC. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GTATGAACGCTCCAATCACCTAAGAATCCAAGTGGTTTTTGAACATTTTTTGCTTATTTTTTGTTTCCTTCTTGAACAGGCTCCGATGCCCTGCAAAGCCCCCACGCCCTGCCGCCACCCTGGTTGCGGCAAGCTGGTTTCGGATGGTTCTGGTTACTGCGCCGACCATCAACGTGACAAGGTGGGATGGCACAAAGACCGGCGTAATGCACATCAACGTGGCTACGGCGCGAAGTGGCAGAAAATGCGCAGCTTCGTCATGCAGCGCGATCAAGGACTGTGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCGGCCGTGGCGGTGGACCACATCGTCCCCAAGTCGCAAGGTGGCACCGATCATCCCAATAACTGCCAGGCGATCTGCCATCGCTGTCACGTACTCAAAACGGCGAAGGAATCGCGTCAGTAACGCGAAGATGCTGGATGAAGACAATCTGGACAGATGCACAATGACAATGGTCATGGCATGCTTG # Right flank : ATGCTCGGGGCATCAACCGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCATCAATTTTTCGCGCGTGCAAAATGAAAAACTTTTTTTGGACAAAACCGTGTCAAAGCTAAGCGTTGCAAGGGACTACAAGGCTGACTTGGCACAGATCGAACAGATCAATGCGACGTCATGGACTGCAGCAGGTCACGCGGGCATGACCCCAGCCAAACCTGTAGAACTGGAACCCTATGCGCGGCCGTAAACCTCTGCCTGTGGCAATCAAGAAGATCAAAGGTACGCTGCAAAAATGCCGAACCAACCCGCATGAGCCCCGTCCCGAGGGGCAATTGGGTGCCCCCCCGGAGTACATGTCTGACATTGCCAAGGAGGCATGGACCTATGCGGTAGAGAACGCACCGCTCGGTTTGTTTTCTTCCCTTGATGCCACGGTTCTGGAACGCTGGGCCAATTGCGCAGGTCTGTACCGTG # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 3634742-3635010 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIH01000029.1 Xanthomonas albilineans strain REU174 Xal-REU174-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3634742 28 96.4 32 A........................... TGCTGATTGCAGCTCGTCCACGGCTTGTCCAC 3634802 28 100.0 32 ............................ GTCAACTGGCTGGACAACGCCGGCCTGGTGAC 3634862 28 96.4 32 A........................... AGAACGGCATGACTTGCATATAGCCGCGCGCA 3634922 28 100.0 32 ............................ TTCGAGGCGAAGCTGAAGGGGGATGCGTTTCA 3634982 28 96.4 0 .........................C.. | T [3635006] ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.8 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TGGTTCTGGCTACTGCGCCGACCATCAACGTGACAAGNAAGTGGTTTTTGCACATTTTTTGCTTCTTTTTAGAACAGGCCATCAATGCCCCGCAAAGCCCCCACACCCTGCCGCCATCCTGTTTGCGGGAAGCTGGTTTCAGATGGTTCTGGCTACTGCGCCGACCATCAACGTGACAAGGTGGGCTGGCACAAAGACCGGCGTAATGCACATCAACGTGGCTACGGCGCGAAGTGGCAGAAACTGCGCGCCTTCGTCATGCAGCGCGATCAAGGACTTTGCCAACCATGCAAACAGTCAGGATGCTTGACGCCGGCCGTTGCTGTGGACCACATCGTCCCAAAGTCACAGGGCGGCACCGATCATCCACACAACTGCCAGGCGATCTGCCATCGCTGTCACGTAATCAAGACAGCCAAGGAATCGCGTCAGGGACGCGAAGATGTTTGATGGAAGGCAATCTGGACAGATGCACAACGACAACGATCATGGCATGCTCG # Right flank : ATGTTCGGGACATCAACTGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCCTCAATTTTTCGCGCGTGCAAAATGAAAAACTTTTTTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGGTTGAGCGATGGAACATGCAGTGATGGACTGGGCGACCAACGGTGGGCCTGCCGGCCACAAGGGAACGGGCCACGCGGATGCGAGGCCCCTGAAGTATTTCATCGCCGACGATCACCCGTCGACGACATTCGCGGTGATGCAACTGCTTTCCACGGTTTTCGCCGTGCCGGACTCGCACTGCGTCACCTTCCATGGGAGCGCGCTGCTGCTGGATGCCTGCGCGAATCGTCCCGGCGATGAGATCCGGCTGGTGGTTCTTGACCTGGTGATGCC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 7 3657312-3657520 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIH01000029.1 Xanthomonas albilineans strain REU174 Xal-REU174-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3657312 28 89.3 32 T..........TG............... ATGGCGATCACGAGGAAGCGCGCCGTGACTGC 3657372 28 100.0 32 ............................ AGCCGCGAGCAGGTAATTGCCGGCCTTGGCCG 3657432 28 100.0 32 ............................ AACATGGACATGAACTTCGACGCATACATCAC 3657492 28 96.4 0 .........................C.. | A [3657515] ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : ATGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCAGCCGTGGCGGTGGACCACATCGTCCCAAAGTCGCAGGGTGGCACCGATCATCCAAACAACTGCCAGGCGATATGCCATCGCTGTCACGTACTCAAAACGGCGCAGGAATCGCATCAGGGGCGAGAAGGTGCTTGATGAAAAACAATTTCGACAAATGCACAACGACAACGGCCATGGCATGCTCGATTCACTGCCGTGTAGGCAGCTCAGAGAACTGTCTGCGCTCGCATGTAGCCATGGCGCTATGATCTGGGAGCCAATGTTGGCAATAGAAAGAGGGGTTCTACATGAAAGCTATTTTTTTAGCGGTAGCATTGATGGCTGCCATCGCCCCAGCGTTTGCGGATGTCCACGTGCGCGGCTATCACCGTTCTAACGGCACATATGTAAAGTCGCACCATAGAAGTTCCCCCAGCCATAACCACACCAGCCACTCCCACCGGAGTCGATAATTCTGAGGATT # Right flank : ATGATCGGGGCATCCATCGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCCTCAATTTTTCTCGCGTGCAAAATGAAACAGGGGGGGGGTCCCCCCTGCAAGGAATCAACATGGCCGGACGCAAGCGTCTTCCCACCACCGTCAAGCAGATCAAAGGCACGCTGCAAAAGTGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCATGGGCGATCAACTGGAAGCCGCTGTCTTCGGCGGCAATCTGCTGCAATGCCTGTCCATCGACCAGCGCAAAAGTCGTGCGCAGCGACGCGTGCCGGGCCACGATGCGATCCAGGGTGCGTTGTAGTGCCTGGGTGTCCAACGCCCCACGCAAGCGCAGGCCGCCGCTGATGTGATACGCCTGACTGACG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //