Array 1 31742-29986 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCEP01000037.1 Streptococcus ruminantium strain MO492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 31741 36 100.0 30 .................................... CTATATTTTGATGACGACAATGTCAAACTT 31675 36 100.0 30 .................................... GAAAATCCCTCTTTCAAGTCCGCTTGAATA 31609 36 100.0 28 .................................... CTCTGTGATAACCTTGAAAACCATCTCT 31545 36 100.0 29 .................................... ACTGAATTAAAGAAAGAACTCAATGCTTG 31480 36 100.0 29 .................................... CAGCAACAAGCCTTTCACTAATAGTTCCC 31415 36 100.0 30 .................................... CTTCAATTGTTTTAAGTTTACCTGCTTGTG 31349 36 100.0 30 .................................... CCTCAAGTGTTGCGTTGTTCAATGACAGTT 31283 36 100.0 30 .................................... ATTATACGCATACAAAACTGAATAAAATAA 31217 36 100.0 30 .................................... TATGGCGAAAAAACCAAGCGGACCGAAAGT 31151 36 100.0 30 .................................... AATCCTTGCCCACGATAGTGATTTGGGCTG 31085 36 100.0 30 .................................... TTTTTAGCGGCGCTTGGCAGTATCCGCATT 31019 36 100.0 30 .................................... GATCTGTTTCATGGAAATCTTCGATGATTT 30953 36 100.0 30 .................................... ATTTTTTCATTGTCTGTTAAATCTTTGTGT 30887 36 100.0 30 .................................... GGAGAAGATGGCTTCCTTCTACAGGTATTT 30821 36 97.2 30 .............T...................... CTAGGTGCTGTAATTGGTAAAAGTGAACTA 30755 36 86.1 37 .................GC....A...T.......T GCTTGACAATATGATTAGATAATGATATTGTTCTTGT 30682 36 75.0 30 ...C...G.T...T.G.....G.....AG....G.. AACCAAAGCTAACTACAAACGTGAATTTTA AG [30673] 30614 36 100.0 30 .................................... AATTTTGCGGTAAGGTCAAGAAAAAAGTCA 30548 36 100.0 30 .................................... GGGTGGTTGGTTTAACAACAGTCCAGACGT 30482 36 100.0 30 .................................... ATAGTCATTACCAAAACACTCAATCACATA 30416 36 100.0 30 .................................... ATGATGGTAATAATATTACATCACTACCAT 30350 36 100.0 30 .................................... AACGAGGTAATAAAATGATGGTAATGTTAA 30284 36 100.0 30 .................................... AGTTCTTCAACATCAACCTCTTTACCCTCA 30218 36 100.0 30 .................................... TATCCGCTGAGTGCCTTCACCGTCCAGAAC 30152 36 100.0 29 .................................... CTGGGTTAGTAGTGACAAGATTATGATAG 30087 36 100.0 30 .................................... AATGCAGGCAAGAAGGTCAAAGGCGCAGTA 30021 36 88.9 0 ...............................CCCC. | ========== ====== ====== ====== ==================================== ===================================== ================== 27 36 98.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTTTGAGAAAAGTTAGCTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGATAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTTTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATAATTGGAGTAAGAGAGTATAAAAATCATTTGAG # Right flank : CCTCTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTGATCATGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGATCGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGCAATGTAAGATAATTTGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //