Array 1 170983-171555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEX010000007.1 Pectobacterium polaris strain IPO:4059 NAK:253 IIJFCFAL_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 170983 27 85.7 32 T.........-.A....C.......... CAGGGAAAACGTCAGAGAATCAATCAGCGCAA TA,G,C [170986,170989,171000] 171046 28 89.3 32 ...........GA....C.......... TCAGAGGGTTTTTGAAAGTCGGTTTCCACCGC 171106 28 89.3 32 ...........GA....C.......... ACACCTCAACCGTGGCAATAACATCATCATCG 171166 28 100.0 32 ............................ CAGCCAGCGAATCAGGGGGCCATCAAGCCATC 171226 28 100.0 32 ............................ GTTCCAAATTCCAGTGCAGTTAAATTTCATGT 171286 28 100.0 32 ............................ TTCACTGTTATTCCGGCTGCGCGGAGTATCTC 171346 28 100.0 32 ............................ ATTTCAACAAATCGCCAATAAAATGCATTACG 171406 28 92.9 32 ............A....C.......... AAAGCCAGGGTGAATCTCACGGAACAAATAAA 171466 28 96.4 33 .................C.......... CGTTCCTGCTGTTCCCAAAACAGGAAGAATGGA 171527 28 82.1 0 ............AC...C..T...C... | A [171550] ========== ====== ====== ====== ============================ ================================= ================== 10 28 93.6 32 GTTCACTGCCGTGTAGGTAGCTTAGAAA # Left flank : TGGTGTGCATAACGTCTTTAAAAAATACGTCGATTCCTGCACAGTCAATATGGCATGAATGTTATCGTTATTTATTTCATTTAGTTGAGCATGTAATTTATGATAATTAATATCTGCATGCTGCTTTTTAAAATCAAGATAATCCTCTAACCGATAGTCATCATCCACAAGCGTTTTTAAAACCGGATCGTATTTCACAGTCACCCACTCCCTTGAATTTGACTTAAGTCAACGAACTATTTCCCTGTAAGGGCACTTTAACGGAAAAATGATGATTTTTAAATGTCAATAATTCCCACCCCGCAATTTTTCATTCCCTCAAAAAGAAACTCATTACTTAAAAGCGTTACGCAAGAAGGCCATCAATATGCGTTATTTAAGGGTTGAGCACTTGGTGCAGTGCTACCTCGATAATAGCCAGACAATAGCGCTTAAATCCGTGGATAAACTGCCTGTGCGGCAGTGAACAATCGTTATTCGGTACACCTTCATAGCGACCA # Right flank : ATATCAGGACTTTCATTTCGCCAGACATCATCCGGTCAGACTGACCGATTATTTAACCCAATCTTCCAACGTCAGCCCCTGCACTCTTTCAAACTCTCTCAGATTATTGGTAACCAATATGGCCTTAGCGCTGATGGCATGACCAGCGATGGCCGTATCATTTGGGCCAATAGGCGTGCCTGCGGCGGCTAGCGCAATTTTGATTTTCGTTGTGGCATCTACCGCAGCACTATCCCAAGGTAACACCGCATCGAGTCGACGACAGAAAGCATCGACTAGTTGCATATGGCGTGGCGAGGCTTTTTTTCCAACCGCCCCGAAACGCATTTCAGCGTAAGTGATGGCAGAGACCACGATCCGATCACGCCGCAATGTGCACTGCTGTAACTTGTCAATCACCGCTGTCGGGTGTTCACGCATAATGAAGGAACAGATATTGGTATCCAGCATGAACAAGCGACTCACAGTTCGAATCTCCCCTCTTCGACTATATCCTGACG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGCTTAGAAA # Alternate repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //