Array 1 5-1191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEN01000039.1 Paracoccus sp. J39 ParJ39DRAFT_c38_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 32 ............................. TGCAAGACCCTGAGTCGGGTATTCGAGGTTCC 66 29 100.0 32 ............................. AAGTCGGCCTGCTCTTCCGGTGCCGGAACCCC 127 29 100.0 32 ............................. CGGGGTCGGCCGATCAGATGCAGGGCGCCTTG 188 29 96.6 32 ............................T TTCACACGGGAAGAATTTGCAAGGGCATTGAA 249 29 96.6 32 ............................G CGGGCGGGTGGACGCGCTGGGGTTGCCCGTTC 310 29 96.6 32 ................T............ GAATCGGACGCCGCGAGTTTCATGGAATCGCA 371 29 100.0 32 ............................. GGCTTGCCGGGTAGCGTCCTCTGCCGCCACCA 432 29 100.0 32 ............................. CTAAGCGCCGACGCTGGATCGGTTTGCAGAGC 493 29 100.0 32 ............................. GCGCGGATTTGTCAGGGCGGTCAATAAGTGGA 554 29 100.0 32 ............................. GAGTTCGCGGACCTTGGGGTTGATCCCGCTTG 615 29 100.0 32 ............................. GGATCTGGTATCATTCGGACGGTGCCTATCTG 676 29 100.0 32 ............................. CCGTATTGGCCCGGCAGCCATGGCGACAAATC 737 29 100.0 32 ............................. GTCGCCGCTTCAGCGGTATAACGGCGCCGGCG 798 29 100.0 32 ............................. GACGCCTACTGGACCCCGAAGCAGGCGGCTGT 859 29 100.0 32 ............................. TATCGATCCGACCAGAATCAGATGCTGATGCG 920 29 100.0 32 ............................. GGTCTTGGTCATTCTGCTGCAACCTTCGTCGC 981 29 100.0 32 ............................. TGCATGTCGGCCATGGGGCTCATTCCGCTTTC 1042 29 100.0 32 ............................. TTGCCTTGAGCCGGCGTCCCCGACCTCGAGGC 1103 28 96.6 33 ....-........................ GATGGACGCGAGCCTCGCGACCAACAACGATGC 1164 28 93.1 0 ....-.......................T | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.0 32 GGCTCCCCCGCACCTGCGGGGATAGACCC # Left flank : TTACG # Right flank : TGTTACCCGTGCATTGTCCCTAGGACCACCTCTCAGCAGCCAGATTTGCCGTCCCACGGACGAACGACCGCTGTCGGGAGCGCTGCCCCGCAGCATTGGCGCGGGTCGACTGTCAGCTAAGGTCGGATGCGATGGCGCCCGTTGCTGGGCTCGAGTGGCAGTGACCTGCCCCTGAACTTTCCTCCAGATGCGATTAGAGTCCGGCCCAACTTGAGGACGGACAATGAAGCGAACGAGATTCACGGANATCGGGATGAAAGGATCAAGCTTTGGCCGCCTGACCTCGGCCGTCCGTCGGTAGCCCGGTGGCACCGAGAAGGTCATCATCTTCGCAACCGTGTCACGCGAGATGTTGAACACCCGCGCCGCTTCCCGCTGGCTCATGCCTTCCGCGCAAGCCTGGCGAACTCTCAGATATAGGTCCACGCTGTAAATCCTCACGCCCTCCCTGCCGCCGCAGAAAGGGAATAGGTGGACGACTTTTACGCCGCCCGCAGCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCTGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 14818-14968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEN01000039.1 Paracoccus sp. J39 ParJ39DRAFT_c38_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14818 29 100.0 32 ............................. GCTTGACGCATTAGACCAAGTAGACCCGCCAT 14879 29 100.0 32 ............................. TGGGAAAGCGTCAGCTCCTCCAGGCTGTCCGC 14940 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 37 GGCTCCCCCGCACCTGCGGGGATAGACCC # Left flank : CGGCCAGGATCGCCCTTGACCGGCCCGGCGAGAATATTGAACGCCTCGCCCGGCGCCTGACCGGAGAGACGATCGCCCGGAAGGGCGTGATCCCGGCGATGATCGAGCGGATCAAGGCGCTGATCGAGGGGCGCGATCCCTGATGCCACTGACGATGATCGTGACCCGTGATGTCGAGGCGCGCTATCGCGGGTTTCTCACCTCGGTGATGCTGGAGATTGCGCCAGGCGTCTATGTCGCCCCCGACATGTCGGCCGGCGTACGCGGACGGGTCTGGTCGGTGATGACCGACTGGTGGACGGCGCTCGGCCGTGGCTCGCTGACCATGGTCTGGCGAGACACCGGCGCGACCGGGAATCTGAGGATCGAGACCTTGGGCGAACCGCCCAAGGAGATCGTCGACGCAGATGGGGTTTTACTCGTCAAGCGTGTGTAACAGTAAAAACACTCGCGCGTATGCTTTTTGACATCGCTGGAAATTCAATATATTGGGCAAGAGA # Right flank : CGCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCTGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA //