Array 1 136300-135174 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYWO01000004.1 Aerococcus sanguinicola strain UMB623 NODE_4_length_247517_cov_32.159703, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 136299 28 100.0 33 ............................ TTTGGACTTGCCGACAAGCTTTTCAAGCTTGGT 136238 28 100.0 33 ............................ TGGAGTTTCGTGATGGCCAGTGGAAGCGCTCAG 136177 28 100.0 33 ............................ TTATTGACCACAAGGAAATGTTTATCGTGCGAG 136116 28 100.0 33 ............................ TGGGAGCATGGTCGAATCAGCTTATCCAAAGAA 136055 28 100.0 33 ............................ CCTGAGCTGCCCTTTACCTTTTTCGTACTTCTT 135994 28 100.0 33 ............................ CCTAAGACGTGTTTTTGCATTTCTGTCATAGAT 135933 28 100.0 33 ............................ TTATTAAGTGTTTCAATAAAAAAATACACGAAA 135872 28 100.0 33 ............................ TTCTAAGTGTGCGACTAATACTTTAGTCACTAG 135811 28 100.0 33 ............................ TCAATATATGACCTGTACGGAGAAGGCTATCGT 135750 28 100.0 33 ............................ TAGGATATGCAAAAGACGCACATCTATTGTGTG 135689 28 100.0 33 ............................ TTGCAGGCGGCACTGAATGGATAAAATATTATT 135628 28 100.0 33 ............................ CAGTTGTATCTAAATCAGAAGACAAATAAATAG 135567 28 100.0 33 ............................ CGGCTTCGGCGACTTGAATGACTACGTCAAGCA 135506 28 100.0 33 ............................ TCGTCAGCTATGGCCGGAGAGATTGAGGAGTAC 135445 28 100.0 33 ............................ CATGAAAGTGAAAAAAGGTTGGGCCGCCATGTA 135384 28 100.0 33 ............................ TACATCCGCTTTAGCAAGCGAAAGCTCATCAGC 135323 28 96.4 33 ....................A....... TGGTTTGTTGAGCTTTCCAAGTTGCCCCATGAT 135262 28 96.4 33 ...T........................ TCAAGCATTTTTCAAGATTACGAAGATCCTGTC 135201 28 75.0 0 .......T........T.....ATC.TA | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.3 33 CTTCTTCCCGCATACGCGGGGGTGATCC # Left flank : GACAGAAGGCGCCACAGTCTCAATCAACTATGCCAGCCAAGGTCAGAGCCGGGTTGAGAAAATGGAACTCACTAAGAACAGCTTAGGCGAAGGAGAGAAAGTCTTAATTATTGATGATTTCTTGAATGGTGGCGGGACAATCACAGGCATGTTGAGCATGACCAGAGAATTCAATGCGACCTGTGTGGGCATTTGTGTCCTAGCTGAAGTTCAAAACCCTGAGCGACAAGTGCCCTTCGACTACCAATCCCTCATGCAAGTCGTCAAATCACAAGATAACACCCAACTCGTCGAAGTCCTACCTGGTAGTATCTTTGATGATAAATAATAAATTAATCGAAGCTCCTGAGTCGCAAGCACTGAGGAGTTTTTTTGAGGGTTTTTCCTAGATAAAATGATAAGAATCATTTATAGTGATTGTAGCAAGCAAATTATTTCAAAGTGAATGAAAACGGCCGAGGGATCGAATAAGAAGCTTGATTTAATCAGCTTTTTTTAGT # Right flank : GATAACGACCAAAAAGAAAAAGAAGCCCAATCCAACGATTAAAGCTTCTTCTGTACCAGGGGAGGTAACAGCTCCCCTCGGTACTTCTATTATAGCACATTCATAGGAGGTTCAAATTATGTCAGCAGTTACAATTGTCTTACTCGCATTATTGGTTTTAGCTACTGTTGTCGGTTTAGGATTAACCGTTTACTCAACAATTAGAGATGAAAAGAAATATGGAAGAAAATAACTTTATCTTAGTCCTGCCATTCATTATCGTCTCTAATATGGGATTTAGCATTGGGAAGAATATCGGTGCTACTCCGCTCTGATCAATCGTCTTGCCAATAGAGAATGTAAAGTTGAAAATATGACGTCAGGTTTCTTCCCGCATACGCGGGTGATCTCACAAGGCGCACAAGATCAGATACAAGTTCAAGCTTCTTCCCACGCAAGCGGGGAAGACTCCAAGAAAAGAATATCATTCAGCAATACGAGAACACGAAAAAAGAGAAATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 741092-740332 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYWO01000001.1 Aerococcus sanguinicola strain UMB623 NODE_1_length_914953_cov_31.736122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 741091 28 100.0 33 ............................ CAGAATTCTTCTAGCAAAATTTGGAGTCAAAGG 741030 28 100.0 33 ............................ TGCTTAGGGGAATAGACCTGAACCAAGAGTACG 740969 28 100.0 33 ............................ CTTTGTCAGTAAGACGGCGGATAGCTATCGTCC 740908 28 100.0 33 ............................ CTGGTTTCTCGTTGGTTCTTTATACAAAAGAGC 740847 28 100.0 33 ............................ CTGAGTTTTGTTCAGCCTTCTCCACAGCAGTTG 740786 28 100.0 33 ............................ CCGGAAGCTTGCACAATGGCTGAAAGAAAAAGG 740725 28 100.0 33 ............................ CATTTCTGGCCCTGTTTCAGTATGGACAATCCA 740664 28 100.0 33 ............................ TATAAGGAGGAGCCCATGACAGAAATCATCTGC 740603 28 100.0 33 ............................ TGACAGACTTTGACCCGCTTATAGACACAGTGG 740542 28 100.0 33 ............................ CTACGTCCATTCTTACTTCGAGTCTCCAGAAGC 740481 28 85.7 33 ...........GC.A.....A....... TACTAAGTTTTCTTTGGCATATCCTTGTGTGAT 740420 28 92.9 33 ...........G..A............. CATCAAAGTAGCGCGCCACTTCTTCGCTGTGGG 740359 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.1 33 CTTCTTCCCGCATACGCGGGGGTGATCC # Left flank : GAGCCAAATAAAGATAAAATTATCGAAATAGCAGCTATGAAGATAAAGGGACAAGAGAAAGAAGTCTTTCATCATTTAATAGCTGAGCGGACAGTTCCCATGCAGATTCAAAAACTAACGGGGATTAGCCAGCGAAAAATAGATGAAGAGGGGATAGATGAGAATGAAGTGTTAATAGATCTTCTTCAATTTATTGAAAATCAGGTTATCGTTGGATACAATATTAATTTTGACATTAGCTTTATTAATAAGCAGCTGAAAAAGATGGGTCAAGAAAATTTATCTAATCCTATCTTAGATTTAAGGACTATTGTAAAAAAAGAAAATATGTTCTTAAAAAATTATCAATTACAGACAGTCCTACTGAGTTATGGAATTGATAAAAAAGTTCCCCATCGAGCTTTGGGGGATGTCGAATTAATAGCAGAGCTAATTTCAAAAGTGAATAAATTTCCGACTTACTTGAAAAAGAAAGCCCGGTAATATAGGGATCCTTTAGT # Right flank : TGATTTAGGATTAGGATATTATATACTATGGAAAAGAGGTGTAAAAATGAATGATTTTATTTCTGATAAAGTTGTAGCTGAAAGATTAAAAGCTTTAAGAGAAGAAAAAGGCTACACGCAAAAAGATCTAGCTAATTTAATTAGTGCAAATTATGAAACAGTTCGGGGCTGGGATTATGGTAAGTCTTTGCCTAAGCATGAAATGCTGGCAAGATTAGCAAAGCTATATAATGTAAGTATAGATTACATACTGGGCCAAACTAATACTAAAGAAAGATATAAATAAAAAAGCCCATCTAATCGATGGACTTACTTATCATTAGTAACCAGCGTCATTAAATAGTCGGTCATGCTCAAGCCGTTCTTTTTGGCCTGGTCTTGTATCAGCTGCTTTTCTTGTGCGGTAAGTCCTAGCTTTAAAGACTTATCACGCTTGCGACCAGTAGCGGGGCGACCTCTTGGGCGTTTCTTTTCTTGGGGCATTCTTGTCACTTCTTTCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //