Array 1 719436-718549 **** Predicted by CRISPRDetect 2.4 *** >NZ_UNZE01000001.1 Klebsiella quasipneumoniae strain 2485STDY5478016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 719435 28 100.0 33 ............................ TTGCTGGTCCTTGATCATGCAAACCTGCAGTTG 719374 28 100.0 33 ............................ CCATTTTTTGCTTCACCTCGCTATATACCTTCT 719313 28 100.0 34 ............................ CCGAGTGGTTTAAGTTTCTGGCACACGCATTCGC 719251 28 100.0 34 ............................ CAACCTCGCCGCGACGGACGCGAACGTCGCGAAG 719189 28 100.0 34 ............................ CGCCTCCGCGATCACCGGATTGACTTCTCGCGTA 719127 28 100.0 33 ............................ CAGAATGTGGATTCACGACAGCCAGCCGCACAA 719066 28 100.0 33 ............................ CAGGATAGCGATAAAAGTTGTGAAGCCCAGCTG 719005 28 100.0 33 ............................ TATCATTCAGGCAAGCCCATAAGAAAGCATTTT 718944 28 100.0 33 ............................ TTGCGTTCTGAGTGAGTTTGATTCTTTAGCGTT 718883 28 100.0 33 ............................ CAGGCGCTTGTAATGGGCAATCTGGCCGCATAC 718822 28 100.0 33 ............................ TACCGCCCTCGGGCAGGTACTCCGCACGCTGGA 718761 28 100.0 34 ............................ CGAGCAGGGGAGCAACAACGCGAGAGACAGCATG 718699 28 100.0 33 ............................ CGAGATCGACCCATTCGCGGCGCAGTGGCTGCG 718638 28 100.0 33 ............................ GGTCAAAACCGCGGCCCCGGCAACTCAACGGGA 718577 28 82.1 0 T......A....TC..........C... | C [718555] ========== ====== ====== ====== ============================ ================================== ================== 15 28 98.8 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAGCGGCTCTGTATCGATCTGGCGTTTTCCCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGATGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCCGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTTCGTGGGCGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTGTTCGTCTCTGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTTCTCAACCGCCTAGTTATGAAATTCGCTACAAGGGGGAGGTCAGAAAGCCGATTATTGAGCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATTCGCGGATATAGTGGTTGAGTTGATGCTCTTTGACAATATGTTGGT # Right flank : CGCTCAGCTTACCCCGCCAGATGGCACACGGCTTCAATATTGTGCCCGTCTGGCGCAATCACAAAGGCGGCGTAGTACCCGGCGTGGTAGTTGGGCCGTAACCCCGGCGCGCCGTTGTCCTTTCCTCCGGCGGCCAGCGCCGCCTGCCAGAAGGCATCCACCTGCTCGCGGCTGTCGGCGCGAAAGGCGATATGCAGCGGCGCAGGGTTGTCCGCACTTTGATAGAGGCATAGAGAGACATCGCCGCTGCCCGCCAGCTCTGCGCCGTAGGTCGGCTCCCCTTCGCCGACCAGCGTTACGCCCAGCGGTGCAAGGGCTTGTAAAAAGAACGCTTTGCTGGCGGCATAGTCGCTGACGCCGAATTTCACATGATCGAACATCTCTTCTCCTGTGGCCGGGGTATCGCCAGCCGAACGCGTTAGCCGGGAAATAGATGCAAAATAGTTAACAACGGGTAGTAACTTTTTTAACAGCTCAAAATGTTTAATTATTCCTAATAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 728902-728142 **** Predicted by CRISPRDetect 2.4 *** >NZ_UNZE01000001.1 Klebsiella quasipneumoniae strain 2485STDY5478016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 728901 28 100.0 33 ............................ TAATCCGGTCATTATTGCAGGCGGTTCTGGGTT 728840 28 100.0 33 ............................ CGTTCTGGAGAGCTGGGAAGGGGAGCAGTTCAT 728779 28 100.0 33 ............................ TTTAACCGCGTTGCGAGCGGTATTACCAGGGGA 728718 28 100.0 33 ............................ CCCGTTCAACTACTGGTATTCGGTGGCATGGAC 728657 28 100.0 33 ............................ CACCTGCCGTTCGTGGGTGCTGTACCGGATGCA 728596 28 100.0 33 ............................ CCTGCTGTTCCGTGTATGCCGGATAACTGTGGT 728535 28 100.0 33 ............................ TCGACATGCAGCGTCGGGTTGCCTGGGTTAACC 728474 28 100.0 33 ............................ CGTACTTCACCACCCGGTAACCCACTGGATGCC 728413 28 100.0 33 ............................ CGGGGAGCGTAAGTCCGGCGCTGTTAAAGACGT 728352 28 100.0 33 ............................ CACACGATTAATACGCACCAGACTAGGGCGTTT 728291 28 100.0 33 ............................ TATCATGATGCGTACCGAGTGGCGGGCTTCGCT 728230 28 96.4 33 ...........A................ CGCAGAAAGCACGCTGGCTTCTGCTATCAGCGC 728169 28 82.1 0 ...........A..........G.C.CG | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.3 33 GTCTTCCCCACGTGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTTGACGGCGCGGCGCAGGATAACAGTCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGCACCGAGGGCGACGACTTTCCGCTACGCGCCTACGGAACCGCGCTGCGCGATGCTGAACACTGCCATCTGACGCTTCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACGGAAGGCAAGCGTCAGGTTATAACGCTACGCTATGGGATGACAAAAGCACTTTGCGTCCGGCTATGGGCCGGGCAGGCCAGTAGGCTAGACCGATCCTGGTCATCAGCCAGTCGACGGTGGTGACATTGAGACAATCTTGTCCGCTGGATGAATGTTGAAGCTGACGCGAAAACCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATAAGCTGCTAAACACAATATGCTGGT # Right flank : TGACCGTTTATCTGATGCAGACGCATCAATGCGTGACATTATGGTCCTTAACGTACATCAATGTCTTCGATATTTCGTTTAGCCAGCTCCGTCATATATAATTTTTATATGATTTCACTTATAAATATTCGTGAACTATGTTTGTTTTATACTTTCTAAAATGACGTATAAAGCGTTAGGCTTTATGACTCATCTGGAGATATCGCTCTCCCTATTAATTATTTTTAATTTTTTATATTATTATTTTAGGTTTTTATAATAAATTCAGTCTGTTGTGTGTGCTTTTTTATTTTATAAAAAGTTATTTATAAATCCCCCTATTTTTAGTATTAATAAAGGGCACATGATTTTTAAGGAAAAATTCCATGAGGCGCTTAACCAGGGTTTCGCTTCAAAATCAACATGCCACCGCGGCGATAAGTTATGAAAACTGCCCAGCGAAAACCCGAAGGTTGAATGATGGCCGCGTGGTGCAGGGACGCTCGGTGTTGAGCCATTGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //