Array 1 148781-147532 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOSO01000006.1 Escherichia coli strain MOD1-EC6760 MOD1-EC6760_6_length_220484_cov_42.7424, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 148780 29 100.0 32 ............................. CTGGCGGCGGAATATTTCGCGGAAAATCCGAG 148719 29 100.0 32 ............................. TCACCCCGGCGCAGAATCGCAGGAAACTGCGG 148658 29 100.0 32 ............................. CCACGACGGCAAGAGCAGACGCGAGGCCGCGA 148597 29 100.0 32 ............................. CTATCGACGGACGTACAAAAACGGATTACGAG 148536 29 96.6 32 ............................A ACAACTCCTCCGGATCCCACTTCCCGCGCTCC 148475 29 100.0 32 ............................. TGCTGGGTTAGAATTAGTCTCAAATATAATGC 148414 29 100.0 32 ............................. GTCAGGTCCGGTGGTTTTGATGCGCATGCGGT 148353 29 100.0 32 ............................. GCAACCGGGAGCAACTCTGCTCTCCGCATTTG 148292 29 100.0 32 ............................. CCGAAATATCAGGAACGATTCACGCAACTAAC 148231 29 100.0 32 ............................. ACGATCGCGCTTACCGTTGCATCAGTTGCCGT 148170 29 100.0 32 ............................. TAATAATTAGGGCAGAATCCAGTTATTTCGTA 148109 29 100.0 32 ............................. TTTTTTGTGCGTTTGCTTTTACCCCCGCAATG 148048 29 100.0 32 ............................. CAGCTTCACGCAGAAAATATTCTGGCTGATGA 147987 29 100.0 32 ............................. CGACAGCAGCAGCGGCAGCAGCGGCAGCAGCA 147926 29 100.0 32 ............................. TACTGGCACCGCTGGAAGAAATGCTGGATGAA 147865 29 100.0 32 ............................. CAGGCTTTACGAAATCCAGAACATTAAACATC 147804 29 100.0 32 ............................. CCGAACTCGTTAATCTCGCTCGTGTAGCGCTC 147743 29 100.0 32 ............................. TATTTCATCACCCCGGCAAAGGCTTTATAGAA 147682 29 100.0 32 ............................. AAATTATTCATGCCGCGGGCCTTGAACCCTGC 147621 29 100.0 32 ............................. CAATGCGCCCCCACTGTCCATCCCGATACAAC 147560 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCCTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAGTTCCCCCCGCCCCTGCGGTAGAACTCCCAACTCCCAACTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAACTCCTGCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 174962-173955 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOSO01000006.1 Escherichia coli strain MOD1-EC6760 MOD1-EC6760_6_length_220484_cov_42.7424, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 174961 29 100.0 32 ............................. CCGTAGCCGCACTGCCGCCGCCGGTGGTACCA 174900 29 100.0 32 ............................. CGCGCTTCCCGCTGATTACGCCCAAATATCCA 174839 29 100.0 32 ............................. GGCTATTGGGTTATTAAAGACCTGAACGAAAC 174778 29 100.0 32 ............................. GCTCTCCAGTCCACATTGCCGTCCGCGTCCTC 174717 29 100.0 32 ............................. TGAGTGACGTAAGTCATTGATAAAGTGGCGGA 174656 29 100.0 32 ............................. TTCCTACGTATGGTGGCCCGTTTGATAGCTAC 174595 29 100.0 32 ............................. GAAGAGTATGGCCTGCCTTGGGAGGTGTTCTG 174534 29 100.0 33 ............................. TTGGAAATAACGCGGCGCATAACGTCGATTTTT 174472 29 100.0 33 ............................. TTGGAAATAACGCGGCGCATAACGTCGATTTTT 174410 29 100.0 33 ............................. TTGGAAATAACGCGGCGCATAACGTCGATTTTT 174348 29 100.0 32 ............................. TTAGTGCACTGGATACAGGAGTGGCAAAGTGA 174287 29 100.0 32 ............................. GGACATCGCCCAAGGGGTTTCAGTCCAGCGGC 174226 29 100.0 32 ............................. ACCGGGGGATCGTTGAGGTCGTAAATCCCGCC 174165 29 100.0 32 ............................. CCGCACACGTCGAGCTGGTGGGGTTTAATGTT 174104 29 100.0 32 ............................. CGCGCGTGCCACGCTGCTGTTCGAATAACCGC 174043 29 100.0 32 ............................. GATAGGTGTTACACATATGACCAGGCACTGGC 173982 28 93.1 0 .........................-..A | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.6 32 GAGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTTATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACTTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATATGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTTTTTGTCGCCTCTGAAAACTCATCCATTTTGCCCATTCCGGACTAATCATTGTCATTCTCTACAAATTCTGTGGCGTTAATTTTTCTCTGGGGTGAAAAGTATTACGTCGGAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATAGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTCAGGTATGTTCAGGCCGGGCAGTTTCCCGCCCGGCCTTCCTCACTTACGCATTCGACCAGCTCTGGATCGAATCTTCATTCCCCAGCTCACCATGCATCACTTCATACGATTTTTTCAGGATCACATCAGTGTGCTTGGTTAGGTCTTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCGTTGCTCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCCGTATTAATCGCTGCCCCCAGACTTGCACAACCATTAATGGCGTTACGGCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATCACATGTTTCGCAAAGTGATTAATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGATATATCCATGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //