Array 1 676145-677331 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCT01000001.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2689 NODE_1_length_799856_cov_3.43374, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 676145 29 100.0 32 ............................. AAAAATGCCCGAATATTGAGCGCAGATTTAAG 676206 29 100.0 32 ............................. CTAATCACGCTCCCGGACATTGATCCTGAACC 676267 29 100.0 32 ............................. TCCATCAATCACACGCTGGCGATCTTTCACTA 676328 29 100.0 32 ............................. AATATTATCTGGCTTAAAAACAGCACTATTGA 676389 29 100.0 32 ............................. GCTATTTCCGGCGAGCCACTAACAGAGGAGCA 676450 29 100.0 32 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTG 676511 29 100.0 32 ............................. CGTTTGCGCTGCAATGCGCAGTCGACGCCGGG 676572 29 100.0 32 ............................. TTTCAGTTCATCAATTTCCGGGAACGCGGCGC 676633 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 676694 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 676755 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 676816 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 676877 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 676938 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 676999 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 677060 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 677121 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 677182 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 677243 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 677304 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 692617-694584 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCT01000001.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2689 NODE_1_length_799856_cov_3.43374, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 692617 29 100.0 32 ............................. GGGCCGTCAATAAGTATATTCGAAGTCATGCT 692678 29 100.0 32 ............................. TTGCAGGCTAAATCGAGGGATGGCCGGGGAAA 692739 29 100.0 32 ............................. GCGTCATTCGGTGCTGATATGCAGATGATGAA 692800 29 96.6 32 ............................T GACGGCTCGCTGATTTGGGATGACTGGATCGA 692861 29 100.0 32 ............................. TTGTCCATGCTATCGGCAATTTTCATCAGGCC 692922 29 100.0 32 ............................. TTCTGGAATAGACAGCTTGATTGAAGGCGTGA 692983 29 100.0 32 ............................. CGCGCCAATCCGGTGGTGTCCAACACAACGAA 693044 29 100.0 32 ............................. AGCCTGCTCCCGCCGCCTGATTTTGTGGAAAC 693105 29 100.0 32 ............................. GATTGCTCATGCCGCACCGCCTTCAACGCGTT 693166 29 100.0 32 ............................. GACAACCGAACACTTTTGAACGCGCCTTTAGT 693227 29 100.0 32 ............................. CAGCATTACCAGACAACCCTTTTTTATCAGGG 693288 29 100.0 32 ............................. CGTGCAGCTCTTGGCTGTAAAACAAAATATTC 693349 29 100.0 32 ............................. CCCGCTTTATCAATACTTTCGGGCTGCGATAT 693410 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 693471 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 693532 29 100.0 32 ............................. TTCCAGACCAGCGACGCATCGCTGGCGAGCAG 693593 29 100.0 32 ............................. GCTATCTCGTCGGACGGTTTAAAATTCTCGCC 693654 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 693715 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 693776 29 100.0 39 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATCAACGTCA 693844 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 693905 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 693966 29 96.6 32 .............T............... ACCTATATGCGCGCCACGGGTAAGACCTGGGA 694027 29 96.6 32 .............T............... CCGCGCTGACCGCAGAGGTTGCGCAGCAGTTA 694088 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 694149 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 694210 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 694271 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 694372 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 694433 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 694494 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 694555 29 93.1 0 A...........T................ | A [694581] ========== ====== ====== ====== ============================= ======================================================================== ================== 32 29 99.0 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGACGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //